Literature DB >> 366608

Application of higher derivative techniques to analysis of high-resolution thermal denaturation profiles of reassociated repetitive DNA.

R E Cuellar, G A Ford, W R Briggs, W F Thompson.   

Abstract

We have analyzed high-resolution denaturation profiles of reassociated repetitive DNA sequences by using a combination of higher derivative analysis and curve-fitting techniques. Procedures originally used for resolution of components in complex absorption spectra were found to be applicable to high-resolution analysis of melting profiles of reassociated repetitive DNA sequences from pea DNA. Under conditions that eliminate the base composition effect on thermal stability (2.4 M tetraethylammonium chloride), such an anlysis can distinquish "thermal classes" of repetitive DNA duplexes exhibiting different amounts of base pair mismatch. Only a single thermal class is observed in reassociated Escherichia coli DNA whereas at least five classes can be reproducibly distinguished in pea and mung bean DNAs.

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Year:  1978        PMID： 366608      PMCID： PMC393110          DOI： 10.1073/pnas.75.12.6026

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  10 in total

1.  Evolutionary divergence and length of repetitive sequences in sea urchin DNA.

Authors:  R J Britten; D E Graham; F C Eden; D M Painchaud; E H Davidson
Journal:  J Mol Evol       Date:  1976-12-31       Impact factor: 2.395

2.  High resolution thermal denaturation of DNA: thermalites of bacteriophage DNA.

Authors:  D L Vizard; A T Ansevin
Journal:  Biochemistry       Date:  1976-02-24       Impact factor: 3.162

3.  Nature of the heterogeneity in mispairing of reannealed middle-repetitive fern DNA.

Authors:  R A Bouchard; H Swift
Journal:  Chromosoma       Date:  1977-06-23       Impact factor: 4.316

4.  Melting fine structure of DNA fragments of known base sequence from theta X174.

Authors:  A Wada; H Tachibana; S Ueno; Y Husimi; Y Machida
Journal:  Nature       Date:  1977-09-22       Impact factor: 49.962

5.  Characterization of families of repeated DNA sequences from four vascular plants.

Authors:  A J Bendich; R S Anderson
Journal:  Biochemistry       Date:  1977-10-18       Impact factor: 3.162

6.  The relationship between mismatched base pairs and the thermal stability of DNA duplexes. I. Effects of depurination and chain scission.

Authors:  J S Ullman; B J McCarthy
Journal:  Biochim Biophys Acta       Date:  1973-02-04

7.  Effects of microscopic and macroscopic viscosity on the rate of renaturation of DNA.

Authors:  C T Chang; T C Hain; J R Hutton; J G Wetmur
Journal:  Biopolymers       Date:  1974       Impact factor: 2.505

8.  Spectral analysis of high resolution direct-derivative melting curves of DNA for instantaneous and total base composition.

Authors:  R D Blake; S G Lefoley
Journal:  Biochim Biophys Acta       Date:  1978-04-27

9.  Aggregate formation from short fragments of plant DNA.

Authors:  W F Thompson
Journal:  Plant Physiol       Date:  1976-04       Impact factor: 8.340

10.  Alteration of the relative stability of dA-dT and dG-dC base pairs in DNA.

Authors:  W B Melchior; P H Von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1973-02       Impact factor: 11.205
  10 in total
  9 in total

1.  Repeat sequence interspersion in coding DNA of peas does not reflect that in total pea DNA.

Authors:  M G Murray; W F Thompson
Journal:  Plant Mol Biol       Date:  1982-06       Impact factor: 4.076

2.  Phylogenetic relationships among Fusarium species measured by DNA reassociation.

Authors:  A Szécsi; A Dobrovolszky
Journal:  Mycopathologia       Date:  1985-02       Impact factor: 2.574

3.  Evolutionary sequence divergence within repeated DNA families of higher plant genomes. II. Analysis of thermal denaturation.

Authors:  R S Preisler; W F Thompson
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

4.  Melting fine structure of filamentous fungus nuclear DNA.

Authors:  A Szécsi; A Dobrovolszky
Journal:  Nucleic Acids Res       Date:  1980-06-11       Impact factor: 16.971

5.  Evidence for the wide distribution of repetitive DNA sequences in the genus Streptomyces.

Authors:  K Usdin; K Gertsch; R Kirby
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

6.  Evolutionary sequence divergence within repeated DNA families of higher plant genomes. I. Analysis of reassociation kinetics.

Authors:  R S Preisler; W F Thompson
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

7.  Nuclear DNA changes within Helianthus annuus L.: variations in the amount and methylation of repetitive DNA within homozygous progenies.

Authors:  A Cavallini; L Natali; T Giordani; M Durante; P G Cionini
Journal:  Theor Appl Genet       Date:  1996-03       Impact factor: 5.699

8.  Gaussian decomposition of high-resolution melt curve derivatives for measuring genome-editing efficiency.

Authors:  Michail Zaboikin; Carl Freter; Narasimhachar Srinivasakumar
Journal:  PLoS One       Date:  2018-01-04       Impact factor: 3.240

9.  Light-induced modulation of DNA recognition by the Rad4/XPC damage sensor protein.

Authors:  Amirrasoul Tavakoli; Debamita Paul; Hong Mu; Jagannath Kuchlyan; Saroj Baral; Anjum Ansari; Suse Broyde; Jung-Hyun Min
Journal:  RSC Chem Biol       Date:  2021-01-06
  9 in total

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