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Literature DB >> 366387

The taxonomy of binding sites in proteins.

Abstract

Conservation of polypeptide fold and mode of ligand binding is frequently found within proteins of related function. Examples illustrating this phenomenon are taken from NAD linked enzymes, nucleotide binding proteins, polysaccharide binding proteins, heme binding proteins and enzymes with essential Fe--S complexes or zinc atoms.

Entities: Chemical

Mesh：

Substances：

Year: 1978 PMID： 366387 DOI： 10.1007/bf00240135

Source DB: PubMed Journal: Mol Cell Biochem ISSN： 0300-8177 Impact factor: 3.396

69 in total

Review 1. The evolution of dehydrogenases and kinases.

Authors: W Eventoff; M G Rossmann
Journal: CRC Crit Rev Biochem Date: 1975-08

2. Similarities in active center geometries of zinc-containing enzymes, proteases and dehydrogenases.

Authors: P Argos; R M Garavito; W Eventoff; M G Rossmann; C I Brändén
Journal: J Mol Biol Date: 1978-12-05 Impact factor: 5.469

3. The double domain structure of rhodanese.

Authors: J Bergsma; W G Hol; J N Jansonius; K H Kalk; J H Ploegman; J D Smit
Journal: J Mol Biol Date: 1975-11-05 Impact factor: 5.469

4. Comparison of the structures of carboxypeptidase A and thermolysin.

Authors: W R Kester; B W Matthews
Journal: J Biol Chem Date: 1977-11-10 Impact factor: 5.157

5. The structure of carboxypeptidase A. 8. Atomic interpretation at 0.2 nm resolution, a new study of the complex of glycyl-L-tyrosine with CPA, and mechanistic deductions.

Authors: W N Lipscomb; G N Reeke; J A Hartsuck; F A Quiocho; P H Bethge
Journal: Philos Trans R Soc Lond B Biol Sci Date: 1970-02-12 Impact factor: 6.237

6. Crystallographic studies of the activity of hen egg-white lysozyme.

Authors: C C Blake; L N Johnson; G A Mair; A C North; D C Phillips; V R Sarma
Journal: Proc R Soc Lond B Biol Sci Date: 1967-04-18

7. The aromatic substrate binding site in subtilisin BPN' and its resemblance to chymotrypsin.

Authors: J Kraut; J D Robertus; J J Birktoft; R A Alden; P E Wilcox; J C Powers
Journal: Cold Spring Harb Symp Quant Biol Date: 1972

Review 8. Construction of phylogenetic trees.

Authors: W M Fitch; E Margoliash
Journal: Science Date: 1967-01-20 Impact factor: 47.728

9. Crystal structure of human erythrocyte carbonic anhydrase B. Three-dimensional structure at a nominal 2.2-A resolution.

Authors: K K Kannan; B Notstrand; K Fridborg; S Lövgren; A Ohlsson; M Petef
Journal: Proc Natl Acad Sci U S A Date: 1975-01 Impact factor: 11.205

10. Crystal structure of bovine Cu,Zn superoxide dismutase at 3 A resolution: chain tracing and metal ligands.

Authors: J Richardson; K A Thomas; B H Rubin; D C Richardson
Journal: Proc Natl Acad Sci U S A Date: 1975-04 Impact factor: 11.205

14 in total

1. Covalent structure of the flavoprotein subunit of the flavocytochrome c: sulfide dehydrogenase from the purple phototrophic bacterium Chromatium vinosum.

Authors: G Van Driessche; M Koh; Z W Chen; F S Mathews; T E Meyer; R G Bartsch; M A Cusanovich; J J Van Beeumen
Journal: Protein Sci Date: 1996-09 Impact factor: 6.725

2. Conformational changes in the globin family during evolution. 1. Analysis of the evolutionary role of insertions and deletions.

Authors: A A Zharkikh; V V Solovyov; N A Kolchanov
Journal: J Mol Evol Date: 1984 Impact factor: 2.395

The taxonomy of binding sites in proteins.

Review 1. The evolution of dehydrogenases and kinases.

2. Similarities in active center geometries of zinc-containing enzymes, proteases and dehydrogenases.

3. The double domain structure of rhodanese.

4. Comparison of the structures of carboxypeptidase A and thermolysin.

5. The structure of carboxypeptidase A. 8. Atomic interpretation at 0.2 nm resolution, a new study of the complex of glycyl-L-tyrosine with CPA, and mechanistic deductions.

6. Crystallographic studies of the activity of hen egg-white lysozyme.

7. The aromatic substrate binding site in subtilisin BPN' and its resemblance to chymotrypsin.

Review 8. Construction of phylogenetic trees.

9. Crystal structure of human erythrocyte carbonic anhydrase B. Three-dimensional structure at a nominal 2.2-A resolution.

10. Crystal structure of bovine Cu,Zn superoxide dismutase at 3 A resolution: chain tracing and metal ligands.

1. Covalent structure of the flavoprotein subunit of the flavocytochrome c: sulfide dehydrogenase from the purple phototrophic bacterium Chromatium vinosum.

2. Conformational changes in the globin family during evolution. 1. Analysis of the evolutionary role of insertions and deletions.

3. Evolution of the amino acid substitution in the mammalian myoglobin gene.

4. The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes.

5. The short-chain alcohol dehydrogenase ABA2 catalyzes the conversion of xanthoxin to abscisic aldehyde.

6. A structural comparison of concanavalin A and tomato bushy stunt virus protein.

Review 7. Longevity regulation in Saccharomyces cerevisiae: linking metabolism, genome stability, and heterochromatin.

8. As(III) S-adenosylmethionine methyltransferases and other arsenic binding proteins.

9. Heme binding properties of glyceraldehyde-3-phosphate dehydrogenase.

10. Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses.