Literature DB >> 3651413

Wavelength dependence for the photoreactions of DNA-psoralen monoadducts. 1. Photoreversal of monoadducts.

Y B Shi1, J E Hearst.   

Abstract

We have studied the wavelength dependence for the photoreversal of a monoadducted psoralen derivative, HMT [4'-(hydroxymethyl)-4,5',8-trimethylpsoralen], in a single-stranded deoxyoligonucleotide (5'-GAAGCTACGAGC-3'). The psoralen was covalently attached to the thymidine residue in the oligonucleotide as either a furan-side monoadduct, which is formed through the cycloaddition between the 4',5' double bond of the psoralen and the 5,6 double bond of the thymidine, or a pyrone-side monoadduct, which is formed through the cycloaddition between the 3,4 double bond of the psoralen and the 5,6 double bond of the thymidine. As a comparison, we have also investigated the wavelength-dependent photoreversal of the isolated thymidine-HMT monoadducts. All photoreversal action spectra correlate with the extinction spectra of the isolated monoadducts. In the case of the pyrone-side monoadduct, two absorption bands contribute to the photoreversal with a quantum yield of 2 X 10(-2) at wavelengths below 250 nm and 7 X 10(-3) at wavelengths from 287 to 314 nm. The incorporation of the monoadduct into the DNA oligomer had little effect upon the photoreversal rate. For the furan-side monoadduct at least three absorption bands contribute to the photoreversal. The quantum yield varied from 5 X 10(-2) at wavelengths below 250 nm to 7 X 10(-4) at wavelengths between 295 and 365 nm. In contrast to the case of the pyrone-side monoadduct, the incorporation of the furan-side monoadduct into the DNA oligomer reduced the photoreversal rate constant at wavelengths above 285 nm.

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Year:  1987        PMID: 3651413     DOI: 10.1021/bi00387a008

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Rapid Capture and Release of Nucleic Acids through a Reversible Photo-Cycloaddition Reaction in a Psoralen-Functionalized Hydrogel.

Authors:  Yizhe Zhang; Peggy P Y Chan; Amy E Herr
Journal:  Angew Chem Int Ed Engl       Date:  2018-01-24       Impact factor: 15.336

2.  Evidence for structural deformation of the DNA helix by a psoralen diadduct but not by a monoadduct.

Authors:  Y B Shi; J Griffith; H Gamper; J E Hearst
Journal:  Nucleic Acids Res       Date:  1988-09-26       Impact factor: 16.971

3.  Psoralen covalently linked to oligodeoxyribonucleotides: synthesis, sequence specific recognition of DNA and photo-cross-linking to pyrimidine residues of DNA.

Authors:  U Pieles; U Englisch
Journal:  Nucleic Acids Res       Date:  1989-01-11       Impact factor: 16.971

4.  Interaction of psoralen-derivatized oligodeoxyribonucleoside methylphosphonates with synthetic DNA containing a promoter for T7 RNA polymerase.

Authors:  B L Lee; K R Blake; P S Miller
Journal:  Nucleic Acids Res       Date:  1988-11-25       Impact factor: 16.971

5.  The effects of covalent additions of a psoralen on transcription by E. coli RNA polymerase.

Authors:  Y B Shi; H Gamper; J E Hearst
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

6.  Psoralen Derivatives with Enhanced Potency.

Authors:  Alexandru D Buhimschi; David M Gooden; Hongwu Jing; Diane R Fels; Katherine S Hansen; Wayne F Beyer; Mark W Dewhirst; Harold Walder; Francis P Gasparro
Journal:  Photochem Photobiol       Date:  2020-06-24       Impact factor: 3.421

7.  miR-TRAP: a benchtop chemical biology strategy to identify microRNA targets.

Authors:  Huricha Baigude; Zhonghan Li; Ying Zhou; Tariq M Rana
Journal:  Angew Chem Int Ed Engl       Date:  2012-05-08       Impact factor: 15.336

  7 in total

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