Literature DB >> 29316080

Rapid Capture and Release of Nucleic Acids through a Reversible Photo-Cycloaddition Reaction in a Psoralen-Functionalized Hydrogel.

Yizhe Zhang1, Peggy P Y Chan1,2, Amy E Herr1.   

Abstract

Reversible immobilization of DNA and RNA is of great interest to researchers who seek to manipulate DNA or RNA in applications such as microarrays, DNA hydrogels, and gene therapeutics. However, there is no existing system that can rapidly capture and release intact nucleic acids. To meet this unmet need, we developed a functional hydrogel for rapid DNA/RNA capture and release based on the reversible photo-cycloaddition of psoralen and pyrimidines. The functional hydrogel can be easily fabricated through copolymerization of acrylamide with the synthesized allylated psoralen. The psoralen-functionalized hydrogel exhibits effective capture and release of nucleic acids spanning a wide range of lengths in a rapid fashion; over 90 % of the capture process is completed within 1 min, and circa 100 % of the release process is completed within 2 min. We observe no deleterious effects on the hybridization to the captured targets.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  functional hydrogels; oligonucleotides; photo-cycloaddition; psoralen; reversible immobilization

Mesh:

Substances:

Year:  2018        PMID: 29316080      PMCID: PMC5955697          DOI: 10.1002/anie.201711441

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  43 in total

1.  A nanoliter-scale nucleic acid processor with parallel architecture.

Authors:  Jong Wook Hong; Vincent Studer; Giao Hang; W French Anderson; Stephen R Quake
Journal:  Nat Biotechnol       Date:  2004-03-14       Impact factor: 54.908

2.  Photoswitchable supramolecular hydrogels formed by cyclodextrins and azobenzene polymers.

Authors:  Shingo Tamesue; Yoshinori Takashima; Hiroyasu Yamaguchi; Seiji Shinkai; Akira Harada
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-04       Impact factor: 15.336

3.  Light-responsive molecular recognition and adhesion of vesicles.

Authors:  Siva Krishna Mohan Nalluri; Bart Jan Ravoo
Journal:  Angew Chem Int Ed Engl       Date:  2010-07-19       Impact factor: 15.336

4.  Scaling up digital circuit computation with DNA strand displacement cascades.

Authors:  Lulu Qian; Erik Winfree
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

5.  A Shape-Memory DNA-Based Hydrogel Exhibiting Two Internal Memories.

Authors:  Yuwei Hu; Weiwei Guo; Jason S Kahn; Miguel Angel Aleman-Garcia; Itamar Willner
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-24       Impact factor: 15.336

Review 6.  The reaction of the psoralens with deoxyribonucleic acid.

Authors:  J E Hearst; S T Isaacs; D Kanne; H Rapoport; K Straub
Journal:  Q Rev Biophys       Date:  1984-02       Impact factor: 5.318

7.  Photochemistry of the furan-side 8-methoxypsoralen-thymidine monoadduct inside the DNA helix. Conversion to diadduct and to pyrone-side monoadduct.

Authors:  J W Tessman; S T Isaacs; J E Hearst
Journal:  Biochemistry       Date:  1985-03-26       Impact factor: 3.162

8.  Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.

Authors:  Robert Penchovsky; Ronald R Breaker
Journal:  Nat Biotechnol       Date:  2005-10-23       Impact factor: 54.908

Review 9.  Recent developments in reversible photoregulation of oligonucleotide structure and function.

Authors:  Anouk S Lubbe; Wiktor Szymanski; Ben L Feringa
Journal:  Chem Soc Rev       Date:  2017-02-20       Impact factor: 54.564

10.  Polymeric Materials for Gene Delivery and DNA Vaccination.

Authors:  David N Nguyen; Jordan J Green; Juliana M Chan; Robert Longer; Daniel G Anderson
Journal:  Adv Mater       Date:  2008-12-04       Impact factor: 30.849

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  2 in total

1.  Fluorescent Metallacage-Core Supramolecular Polymer Gel Formed by Orthogonal Metal Coordination and Host-Guest Interactions.

Authors:  Chenjie Lu; Mingming Zhang; Danting Tang; Xuzhou Yan; ZeYuan Zhang; Zhixuan Zhou; Bo Song; Heng Wang; Xiaopeng Li; Shouchun Yin; Hajar Sepehrpour; Peter J Stang
Journal:  J Am Chem Soc       Date:  2018-06-12       Impact factor: 15.419

2.  Reversible Functionalization of Clickable Polyacrylamide Gels with Protein and Graft Copolymers.

Authors:  Hector D Neira; Shaheen Jeeawoody; Amy E Herr
Journal:  Adv Funct Mater       Date:  2020-08-26       Impact factor: 18.808

  2 in total

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