Literature DB >> 36272095

Now that We Got There, What Next?

Elly M Tanaka1.   

Abstract

As seen in the protocols in this book, the opportunities to pursue work at the cellular and molecular work in salamanders have considerably broadened over the last years. The availability of genomic information and genome editing, and the possibility to image tissues live and other methods enhance the spectrum of biological questions accessible to all researchers. Here I provide a personal perspective on what I consider exciting future questions open for investigation.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Cell biology; Evolution; Future directions; Genomics; Regeneration; Salamander

Year:  2023        PMID: 36272095     DOI: 10.1007/978-1-0716-2659-7_31

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  50 in total

1.  The axolotl genome and the evolution of key tissue formation regulators.

Authors:  Sergej Nowoshilow; Siegfried Schloissnig; Ji-Feng Fei; Andreas Dahl; Andy W C Pang; Martin Pippel; Sylke Winkler; Alex R Hastie; George Young; Juliana G Roscito; Francisco Falcon; Dunja Knapp; Sean Powell; Alfredo Cruz; Han Cao; Bianca Habermann; Michael Hiller; Elly M Tanaka; Eugene W Myers
Journal:  Nature       Date:  2018-01-24       Impact factor: 49.962

2.  Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability.

Authors:  Peng Jiang; Jeffrey D Nelson; Ning Leng; Michael Collins; Scott Swanson; Colin N Dewey; James A Thomson; Ron Stewart
Journal:  Dev Biol       Date:  2016-07-28       Impact factor: 3.582

Review 3.  Identification of immune and non-immune cells in regenerating axolotl limbs by single-cell sequencing.

Authors:  A K Rodgers; J J Smith; S R Voss
Journal:  Exp Cell Res       Date:  2020-06-18       Impact factor: 3.905

4.  Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.

Authors:  Tobias Gerber; Prayag Murawala; Dunja Knapp; Wouter Masselink; Maritta Schuez; Sarah Hermann; Malgorzata Gac-Santel; Sergej Nowoshilow; Jorge Kageyama; Shahryar Khattak; Joshua D Currie; J Gray Camp; Elly M Tanaka; Barbara Treutlein
Journal:  Science       Date:  2018-09-27       Impact factor: 47.728

5.  A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.

Authors:  Donald M Bryant; Kimberly Johnson; Tia DiTommaso; Timothy Tickle; Matthew Brian Couger; Duygu Payzin-Dogru; Tae J Lee; Nicholas D Leigh; Tzu-Hsing Kuo; Francis G Davis; Joel Bateman; Sevara Bryant; Anna R Guzikowski; Stephanie L Tsai; Steven Coyne; William W Ye; Robert M Freeman; Leonid Peshkin; Clifford J Tabin; Aviv Regev; Brian J Haas; Jessica L Whited
Journal:  Cell Rep       Date:  2017-01-17       Impact factor: 9.423

6.  Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution.

Authors:  Nicholas D Leigh; Garrett S Dunlap; Kimberly Johnson; Rachelle Mariano; Rachel Oshiro; Alan Y Wong; Donald M Bryant; Bess M Miller; Alex Ratner; Andy Chen; William W Ye; Brian J Haas; Jessica L Whited
Journal:  Nat Commun       Date:  2018-12-04       Impact factor: 14.919

7.  The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci.

Authors:  Siegfried Schloissnig; Akane Kawaguchi; Sergej Nowoshilow; Francisco Falcon; Leo Otsuki; Pietro Tardivo; Nataliya Timoshevskaya; Melissa C Keinath; Jeramiah James Smith; S Randal Voss; Elly M Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-13       Impact factor: 11.205

8.  Single-cell RNA-seq reveals novel mitochondria-related musculoskeletal cell populations during adult axolotl limb regeneration process.

Authors:  Tian Qin; Chun-Mei Fan; Ting-Zhang Wang; Heng Sun; Yan-Yan Zhao; Ruo-Jin Yan; Long Yang; Wei-Liang Shen; Jun-Xin Lin; Varitsara Bunpetch; Magali Cucchiarini; Nicholas D Clement; Christopher E Mason; Norimasa Nakamura; Rameah Bhonde; Zi Yin; Xiao Chen
Journal:  Cell Death Differ       Date:  2020-10-28       Impact factor: 15.828

9.  Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

Authors:  Ron Stewart; Cynthia Alexander Rascón; Shulan Tian; Jeff Nie; Chris Barry; Li-Fang Chu; Hamisha Ardalani; Ryan J Wagner; Mitchell D Probasco; Jennifer M Bolin; Ning Leng; Srikumar Sengupta; Michael Volkmer; Bianca Habermann; Elly M Tanaka; James A Thomson; Colin N Dewey
Journal:  PLoS Comput Biol       Date:  2013-03-07       Impact factor: 4.475

10.  Dynamic cell transition and immune response landscapes of axolotl limb regeneration revealed by single-cell analysis.

Authors:  Hanbo Li; Xiaoyu Wei; Li Zhou; Weiqi Zhang; Chen Wang; Yang Guo; Denghui Li; Jianyang Chen; Tianbin Liu; Yingying Zhang; Shuai Ma; Congyan Wang; Fujian Tan; Jiangshan Xu; Yang Liu; Yue Yuan; Liang Chen; Qiaoran Wang; Jing Qu; Yue Shen; Shanshan Liu; Guangyi Fan; Longqi Liu; Xin Liu; Yong Hou; Guang-Hui Liu; Ying Gu; Xun Xu
Journal:  Protein Cell       Date:  2021-01       Impact factor: 14.870

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