Literature DB >> 36264487

Post-bisulfite Adaptor Tagging with a Highly Efficient Single-Stranded DNA Ligation Technique.

Fumihito Miura1, Takashi Ito2.   

Abstract

Post-bisulfite adaptor tagging (PBAT) is a procedure for efficiently preparing a sequencing library for whole-genome bisulfite sequencing (WGBS). The original version of the PBAT protocol was highly efficient, such that it helped realize library preparation from samples of limited amounts. However, two rounds of random priming reactions employed in the original protocol limited further improvement of the PBAT protocol in terms of read length and mapping rate. In this chapter, an improved version of the PBAT protocol called tPBAT is described.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  DNA methylation; Methylome; Post-bisulfite adaptor tagging (PBAT); Single-stranded DNA ligation; TACS ligation; Whole-genome bisulfite sequencing (WGBS)

Mesh:

Substances:

Year:  2023        PMID: 36264487     DOI: 10.1007/978-1-0716-2815-7_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Post-Bisulfite Adaptor Tagging for PCR-Free Whole-Genome Bisulfite Sequencing.

Authors:  Fumihito Miura; Takashi Ito
Journal:  Methods Mol Biol       Date:  2018

2.  Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.

Authors:  Shinya Tanaka; Wataru Ise; Takeshi Inoue; Ayako Ito; Chisato Ono; Yoshihito Shima; Shuhei Sakakibara; Manabu Nakayama; Kentaro Fujii; Ikuo Miura; Jafar Sharif; Haruhiko Koseki; Pandelakis A Koni; Indu Raman; Quan-Zhen Li; Masato Kubo; Katsunori Fujiki; Ryuichiro Nakato; Katsuhiko Shirahige; Hiromitsu Araki; Fumihito Miura; Takashi Ito; Eiryo Kawakami; Yoshihiro Baba; Tomohiro Kurosaki
Journal:  Nat Immunol       Date:  2020-06-22       Impact factor: 25.606

3.  Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

Authors:  Ryan Lister; Ronan C O'Malley; Julian Tonti-Filippini; Brian D Gregory; Charles C Berry; A Harvey Millar; Joseph R Ecker
Journal:  Cell       Date:  2008-05-02       Impact factor: 41.582

4.  Reconstitution of the oocyte transcriptional network with transcription factors.

Authors:  Nobuhiko Hamazaki; Hirohisa Kyogoku; Hiromitsu Araki; Fumihito Miura; Chisako Horikawa; Norio Hamada; So Shimamoto; Orie Hikabe; Kinichi Nakashima; Tomoya S Kitajima; Takashi Ito; Harry G Leitch; Katsuhiko Hayashi
Journal:  Nature       Date:  2020-12-16       Impact factor: 49.962

5.  Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.

Authors:  Fumihito Miura; Yusuke Enomoto; Ryo Dairiki; Takashi Ito
Journal:  Nucleic Acids Res       Date:  2012-05-30       Impact factor: 16.971

6.  Whole-genome bisulfite sequencing with improved accuracy and cost.

Authors:  Masako Suzuki; Will Liao; Frank Wos; Andrew D Johnston; Justin DeGrazia; Jennifer Ishii; Toby Bloom; Michael C Zody; Soren Germer; John M Greally
Journal:  Genome Res       Date:  2018-08-09       Impact factor: 9.043

7.  Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.

Authors:  Fumihito Miura; Yukiko Shibata; Miki Miura; Yuhei Sangatsuda; Osamu Hisano; Hiromitsu Araki; Takashi Ito
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

8.  Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Authors:  Shawn J Cokus; Suhua Feng; Xiaoyu Zhang; Zugen Chen; Barry Merriman; Christian D Haudenschild; Sriharsa Pradhan; Stanley F Nelson; Matteo Pellegrini; Steven E Jacobsen
Journal:  Nature       Date:  2008-02-17       Impact factor: 49.962

9.  NSD1-deposited H3K36me2 directs de novo methylation in the mouse male germline and counteracts Polycomb-associated silencing.

Authors:  Kenjiro Shirane; Fumihito Miura; Takashi Ito; Matthew C Lorincz
Journal:  Nat Genet       Date:  2020-09-14       Impact factor: 38.330

  9 in total

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