Literature DB >> 29224142

Post-Bisulfite Adaptor Tagging for PCR-Free Whole-Genome Bisulfite Sequencing.

Fumihito Miura1,2,3, Takashi Ito4,5.   

Abstract

Post-bisulfite adaptor tagging (PBAT) is a highly efficient procedure to construct libraries for whole-genome bisulfite sequencing (WGBS). PBAT attaches adaptors to bisulfite-converted genomic DNA to circumvent bisulfite-induced degradation of library DNA inherent to conventional WGBS protocols. Consequently, it enables PCR-free WGBS from nanogram quantities of mammalian DNA, thereby serving as an invaluable tool for methylomics.

Entities:  

Keywords:  Methylome; Next-generation sequencing; PCR-free; Single-nucleotide resolution

Mesh:

Substances:

Year:  2018        PMID: 29224142     DOI: 10.1007/978-1-4939-7481-8_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Post-bisulfite Adaptor Tagging with a Highly Efficient Single-Stranded DNA Ligation Technique.

Authors:  Fumihito Miura; Takashi Ito
Journal:  Methods Mol Biol       Date:  2023

2.  Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation.

Authors:  Hiromitsu Araki; Fumihito Miura; Akira Watanabe; Chikako Morinaga; Fumiyo Kitaoka; Yuko Kitano; Noriko Sakai; Yumiko Shibata; Motoki Terada; So Goto; Shinya Yamanaka; Masayo Takahashi; Takashi Ito
Journal:  Stem Cell Reports       Date:  2019-09-26       Impact factor: 7.765

3.  Neuronal activation modulates enhancer activity of genes for excitatory synaptogenesis through de novo DNA methylation.

Authors:  Tomonori Kameda; Hideyuki Nakashima; Takumi Takizawa; Fumihito Miura; Takashi Ito; Kinichi Nakashima; Takuya Imamura
Journal:  J Reprod Dev       Date:  2021-10-07       Impact factor: 2.214

4.  Guidelines for pre-analytical conditions for assessing the methylation of circulating cell-free DNA.

Authors:  Mohammad Amin Kerachian; Marjan Azghandi; Sina Mozaffari-Jovin; Alain R Thierry
Journal:  Clin Epigenetics       Date:  2021-10-18       Impact factor: 6.551

Review 5.  Tracing the Origin of Cell-Free DNA Molecules through Tissue-Specific Epigenetic Signatures.

Authors:  Angela Oberhofer; Abel J Bronkhorst; Carsten Uhlig; Vida Ungerer; Stefan Holdenrieder
Journal:  Diagnostics (Basel)       Date:  2022-07-29

6.  Evaluation of whole-genome DNA methylation sequencing library preparation protocols.

Authors:  Marie Adams; Hui Shen; Jacob Morrison; Julie M Koeman; Benjamin K Johnson; Kelly K Foy; Ian Beddows; Wanding Zhou; David W Chesla; Larissa L Rossell; Emily J Siegwald
Journal:  Epigenetics Chromatin       Date:  2021-06-19       Impact factor: 4.954

  6 in total

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