| Literature DB >> 36262338 |
Fenghai Zhao1, Xianjun Tang1, Jiaxing Huang1, Jiaqi Li1, Yumei Xiao1, Zhaohai Qin1.
Abstract
To discover new potential insecticides to protect agricultural crops from damage, a series of novel flupyrimin derivatives containing an arylpyrazole core were designed and synthesized. Their structures were confirmed by 1H NMR, 13C NMR, and HRMS. Bioassays indicated that the 31 compounds synthesized possessed excellent insecticidal activity against Plutella xylostella. Among these target compounds, the lethality of A3, B1-B6, D4, and D6 reached 100% at 400 μg/ml. Moreover, when the concentration dropped to 25 μg/ml, the insecticidal activities against the Plutella xylostella for compounds B2, B3, and B4 still reached more than 70%. The structure-activity relationship of the Plutella xylostella was discussed. The density functional theory analysis of flupyrimin and B4 was carried out to support the abovementioned structure-activity relationship. The possible binding modes between receptor and active groups in title compounds were also verified by docking simulation. These results provided new ideas for the development of these novel candidate insecticides in the future.Entities:
Keywords: DFT calculation; design; insecticidal activity; molecular docking; synthesis
Year: 2022 PMID: 36262338 PMCID: PMC9574050 DOI: 10.3389/fchem.2022.1019573
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.545
FIGURE 1Structures of representative pesticides containing pyrazole moiety.
FIGURE 2Design strategy of the title compounds.
SCHEME 1Synthetic pathway of the target compounds A–D.
FIGURE 3Crystal structure of compound A3 and the packing representation (CCDC number 2106763).
Structural parameters of compound A3.
| Items | Data |
|---|---|
| Empirical formula | C18H11F7N4O |
| Formula weight | 432.31 |
| Temperature/K | 113.20 (10) |
| Crystal system | Monoclinic |
| Space group | P21/c |
| a/Å, b/Å, and c/Å | 10.7864(6), 13.1528(8), and 12.9293(8) |
| α/°, β/°, and γ/° | 90.00, 106.573 (6), and 90.00 |
| Volume/Å3 | 1758.10 (18) |
| Z | 4 |
| ρcalc/mg mm−3 | 1.633 |
| μ/mm−1 | 0.156 |
| F(ooo) | 872 |
| Crystal size/mm3 | 0.24 × 0.22 × 0.13 |
| 2Θ range for data collection | 6.58–51.98° |
| Index ranges | -13 ≤ h ≤ 13, -16 ≤ k ≤ 11, and -15 ≤ l ≤ 11 |
| Reflections collected | 7,347 |
| Independent reflections | 3,368 [R (int) = 0.0236 (inf-0.9Å)] |
| Data/restraints/parameters | 3,368/0/275 |
| Goodness-of-fit on F2 | 1.018 |
| Final R indexes [I > 2σ (I) i.e., Fo > 4σ (Fo)] | R1 = 0.0453 and wR2 = 0.0957 |
| Final R indexes [all data] | R1 = 0.0576 and wR2 = 0.1035 |
| Largest diff. peak/hole/e Å−3 | 0.346/-0.339 |
| Flack parameters | N |
| Completeness | 0.9970 |
Insecticidal activities of the target compounds at 400 μg/ml.
| Compound | Log P | Mortality rate (%) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
|
|
|
| |||||||
| 400 | 100 | 400 | 100 | 400 | 100 | 25 | 400 | 100 | 400 | ||
| μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | μg/mL | ||
|
| 4.65 | 0 | — | 0 | — | 76.7 | — | — | 0 | — | 0 |
|
| 5.21 | 100 | 0 | 100 | 0 | 36.7 | — | — | 0 | — | 0 |
|
| 4.81 | 0 | — | 0 | — | 100 | 86.7 | 0 | 0 | — | 0 |
|
| 5.21 | 0 | — | 0 | — | 0 | — | — | 0 | — | 0 |
|
| 5.57 | 0 | — | 0 | — | 73.3 | — | — | 0 | — | 0 |
|
| 4.55 | 0 | — | 100 | 0 | 50.0 | — | — | 0 | — | 0 |
|
| 4.15 | 0 | — | 0 | — | 63.3 | — | — | 0 | — | 0 |
|
| 4.15 | 0 | — | 0 | — | 0 | — | — | 0 | — | 0 |
|
| 3.17 | 0 | — | 48.9 | — | 100 | 100 | 16.7 | 0 | — | 0 |
|
| 3.72 | 0 | — | 0 | — | 100 | 96.7 | 73.3 | 0 | — | 0 |
|
| 3.32 | 0 | — | 0 | — | 100 | 100 | 76.7 | 0 | — | 0 |
|
| 3.72 | 0 | — | 0 | — | 100 | 96.7 | 100 | 0 | — | 0 |
|
| 4.09 | 0 | — | 0 | — | 100 | 100 | 0 | 0 | — | 0 |
|
| 3.07 | 0 | — | 0 | — | 100 | 83.3 | 0 | 0 | — | 0 |
|
| 2.67 | 0 | — | 0 | — | 66.7 | — | — | 0 | — | 0 |
|
| 2.67 | 0 | — | 0 | — | 56.7 | — | — | 0 | — | 0 |
|
| 5.25 | 0 | — | 0 | — | 0 | — | — | 0 | — | 0 |
|
| 5.81 | 0 | — | 0 | — | 0 | — | — | 0 | — | 0 |
|
| 5.41 | 0 | — | 0 | — | 76.7 | — | — | 0 | — | 0 |
|
| 5.81 | 0 | — | 0 | — | 73.3 | — | — | 0 | — | 0 |
|
| 6.17 | 0 | — | 0 | — | 70.0 | — | — | 100 | 0 | 0 |
|
| 5.16 | 0 | — | 0 | — | 60.0 | — | — | 0 | — | 0 |
|
| 4.76 | 0 | — | 0 | — | 66.7 | — | — | 40.0 | — | 0 |
|
| 4.76 | 0 | — | 0 | — | 0 | — | — | 0 | — | 0 |
|
| 4.43 | 0 | — | 0 | — | 46.7 | — | — | 0 | — | 0 |
|
| 4.99 | 0 | — | 0 | — | 43.3 | — | — | 0 | — | 0 |
|
| 4.59 | 0 | — | 100 | 0 | 63.3 | — | — | 0 | — | 0 |
|
| 4.99 | 0 | — | 0 | — | 100 | 60.0 | 6.7 | 0 | — | 0 |
|
| 5.35 | 0 | — | 0 | — | 63.3 | — | — | 0 | — | 0 |
|
| 4.33 | 0 | — | 100 | 0 | 100 | 100 | 56.7 | 0 | — | 0 |
|
| 3.93 | 0 | — | 100 | 0 | 73.3 | — | — | 0 | — | 0 |
|
| 3.24 | 100 | 100 | 100 | 100 | 100 | 0 | 0 | 100 | — | 0 |
|
| 4.26 | 0 | — | 0 | — | 100 | 100 | 100 | 100 | 100 | 100 |
Note: FLP, flupyrimin; CAT, chlorantraniliprole.
FIGURE 4Frontier molecular orbitals of FLP (flupyrimin) and B4.
Total energy and frontier orbital energy.
| Energy | FLP | B4 |
|---|---|---|
| ETotal/Hartree | −1499.98765 | −1878.81944 |
| EHOMO/Hartree | −0.23416 | −0.21187 |
| ELUMO/Hartree | −0.07325 | −0.05565 |
| ΔE/Hartree | 0.16091 | 0.15622 |
| TPSA | 47.26 | 61.43 |
| CLogP | 2.572 | 4.103 |
Note: ΔE = ELUMO–EHOMO.
FIGURE 5ESP of FLP (A) and B4 (B).
Model evaluation and docking results by Sybyl x2.0 and AutoDock Vina procedures.
| Sybyl | AutoDock Vina | |||||
|---|---|---|---|---|---|---|
| Compound | Total score | Crash | C score | Affinity (kcal/mol) | Estimated | Ligand efficiency |
|
| 4.38 | −2.84 | 2 | −8.30 | 824.26 nM | −0.40 |
|
| 3.13 | −6.47 | 5 | −4.70 | 0.36 mM | −0.16 |
|
| 3.69 | −6.21 | 3 | −6.00 | 39.99 uM | −0.21 |
|
| 3.15 | −8.35 | 4 | −4.20 | 0.83 mM | −0.12 |
Note: Ligand efficiency = , -∆G represents the binding free energy or docking score, and HA represents the number of heavy atoms of the ligand.
FIGURE 6Simulated binding modes of compounds imidacloprid (yellow) and FLP (green) (A), A3 (B), B4 (C), and D6 (D) with AChBP (PDB: 3c79).
Bee toxicity (Apis mellifera) of B4 and flupyrimin.
| Compound | Bee toxicity | Time (h) | Mortality | Toxic regression equation | 95% CI | LD50 | Toxicity level |
|---|---|---|---|---|---|---|---|
| B4 | Contact toxicity | 24 | 3 | — | — | >11.0 | Low toxicity |
| 48 | 3 | — | — | >11.0 | Low toxicity | ||
| Oral toxicity | 24 | 15 | — | — | >11.0 | Low toxicity | |
| 48 | 17 | — | — | >11.0 | Low toxicity | ||
| Flupyrimin | Contact toxicity | 24 | 12 | — | — | >11.0 | Low toxicity |
| 48 | 20 | y = −1.841x+0.027 | 59.48–76.55 | 67.61 | Low toxicity | ||
| Contact toxicity | 24 | 9 | — | — | >11.0 | Low toxicity | |
| 48 | 13 | — | — | >11.0 | Low toxicity |