| Literature DB >> 36262335 |
Kimberly Walker1, Divya Kalra1, Rebecca Lowdon2, Guangyi Chen3,4, David Molik5, Daniela C Soto6, Fawaz Dabbaghie3,7, Ahmad Al Khleifat8, Medhat Mahmoud1, Luis F Paulin1, Muhammad Sohail Raza9, Susanne P Pfeifer10, Daniel Paiva Agustinho11, Elbay Aliyev12, Pavel Avdeyev13, Enrico R Barrozo14, Sairam Behera1, Kimberley Billingsley15, Li Chuin Chong16, Deepak Choubey17, Wouter De Coster18,19, Yilei Fu20, Alejandro R Gener21, Timothy Hefferon22, David Morgan Henke23, Wolfram Höps24, Anastasia Illarionova25, Michael D Jochum14, Maria Jose26, Rupesh K Kesharwani1, Sree Rohit Raj Kolora27, Jędrzej Kubica28, Priya Lakra29, Damaris Lattimer30, Chia-Sin Liew31, Bai-Wei Lo32, Chunhsuan Lo33, Anneri Lötter34, Sina Majidian35, Suresh Kumar Mendem36, Rajarshi Mondal37, Hiroko Ohmiya38, Nasrin Parvin37, Carolina Peralta39, Chi-Lam Poon40, Ramanandan Prabhakaran41, Marie Saitou42, Aditi Sammi43, Philippe Sanio44, Nicolae Sapoval20, Najeeb Syed12, Todd Treangen20, Gaojianyong Wang45, Tiancheng Xu20, Jianzhi Yang46, Shangzhe Zhang47, Weiyu Zhou48, Fritz J Sedlazeck1, Ben Busby49.
Abstract
In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics. Copyright:Entities:
Keywords: Cancer; Covid-19; Hackathon; Long-reads; NGS; Structural variants; Tomatoes; Viral integration; k-mer
Mesh：
Year: 2022 PMID： 36262335 PMCID： PMC9557141 DOI： 10.12688/f1000research.110194.1
Source DB: PubMed Journal: F1000Res ISSN： 2046-1402