Literature DB >> 36261431

Spatial transcriptome profiling of normal human liver.

Shizhe Yu1,2, Haoren Wang1, Lingpeng Yang2, Yingxue Yan1, Qiang Cai2, Duo Ma2, Long Jiang2, Zehai Gao2, Zhiyong Yu3, Zongping Xia4.   

Abstract

The comprehensive study of the spatial-cellular anatomy of the human liver is critical to addressing the cellular origins of liver disease. Here we conducted spatial transcriptomics on normal human liver tissue sections, providing detailed information of liver zonation at the transcriptional level. We present 6581 high-quality spots from normal livers of two human donors. In this dataset, cells were mainly hepatocytes, and we classified them into four sub-groups. Collectively, these data provide a reliable reference for studies on spatial heterogeneity of liver lobules.
© 2022. The Author(s).

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Year:  2022        PMID: 36261431      PMCID: PMC9581974          DOI: 10.1038/s41597-022-01676-w

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   8.501


  24 in total

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Journal:  FEBS J       Date:  2006-10-20       Impact factor: 5.542

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Authors:  T Matsumura; R G Thurman
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5.  Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer.

Authors:  Lichun Ma; Maria O Hernandez; Yongmei Zhao; Monika Mehta; Bao Tran; Michael Kelly; Zachary Rae; Jonathan M Hernandez; Jeremy L Davis; Sean P Martin; David E Kleiner; Stephen M Hewitt; Kris Ylaya; Bradford J Wood; Tim F Greten; Xin Wei Wang
Journal:  Cancer Cell       Date:  2019-10-03       Impact factor: 31.743

Review 6.  Liver immunology.

Authors:  Dimitrios P Bogdanos; Bin Gao; M Eric Gershwin
Journal:  Compr Physiol       Date:  2013-04       Impact factor: 9.090

7.  Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma.

Authors:  Yunfan Sun; Liang Wu; Yu Zhong; Kaiqian Zhou; Yong Hou; Zifei Wang; Zefan Zhang; Jiarui Xie; Chunqing Wang; Dandan Chen; Yaling Huang; Xiaochan Wei; Yinghong Shi; Zhikun Zhao; Yuehua Li; Ziwei Guo; Qichao Yu; Liqin Xu; Giacomo Volpe; Shuangjian Qiu; Jian Zhou; Carl Ward; Huichuan Sun; Ye Yin; Xun Xu; Xiangdong Wang; Miguel A Esteban; Huanming Yang; Jian Wang; Michael Dean; Yaguang Zhang; Shiping Liu; Xinrong Yang; Jia Fan
Journal:  Cell       Date:  2020-12-23       Impact factor: 41.582

8.  Spatial sorting enables comprehensive characterization of liver zonation.

Authors:  Shani Ben-Moshe; Yonatan Shapira; Andreas E Moor; Rita Manco; Tamar Veg; Keren Bahar Halpern; Shalev Itzkovitz
Journal:  Nat Metab       Date:  2019-09-16

9.  Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly.

Authors:  Xianwen Ren; Guojie Zhong; Qiming Zhang; Lei Zhang; Yujie Sun; Zemin Zhang
Journal:  Cell Res       Date:  2020-06-15       Impact factor: 25.617

10.  Intratumoral heterogeneity and clonal evolution in liver cancer.

Authors:  Bojan Losic; Amanda J Craig; Carlos Villacorta-Martin; Sebastiao N Martins-Filho; Nicholas Akers; Xintong Chen; Mehmet E Ahsen; Johann von Felden; Ismail Labgaa; Delia DʹAvola; Kimaada Allette; Sergio A Lira; Glaucia C Furtado; Teresa Garcia-Lezana; Paula Restrepo; Ashley Stueck; Stephen C Ward; Maria I Fiel; Spiros P Hiotis; Ganesh Gunasekaran; Daniela Sia; Eric E Schadt; Robert Sebra; Myron Schwartz; Josep M Llovet; Swan Thung; Gustavo Stolovitzky; Augusto Villanueva
Journal:  Nat Commun       Date:  2020-01-15       Impact factor: 14.919

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