Literature DB >> 36253030

Natural Language Processing in Nephrology.

Tielman T Van Vleck1, Douglas Farrell2, Lili Chan3.   

Abstract

Unstructured data in the electronic health records contain essential patient information. Natural language processing (NLP), teaching a computer to read, allows us to tap into these data without needing the time and effort of manual chart abstraction. The core first step for all NLP algorithms is preprocessing the text to identify the core words that differentiate the text while filtering out the noise. Traditional NLP uses a rule-based approach, applying grammatical rules to infer meaning from the text. Newer NLP approaches use machine learning/deep learning which can infer meaning without explicitly being programmed. NLP use in nephrology research has focused on identifying distinct disease processes, such as CKD, and extraction of patient-oriented outcomes such as symptoms with high sensitivity. NLP can identify patient features from clinical text associated with acute kidney injury and progression of CKD. Lastly, inclusion of features extracted using NLP improved the performance of risk-prediction models compared to models that only use structured data. Implementation of NLP algorithms has been slow, partially hindered by the lack of external validation of NLP algorithms. However, NLP allows for extraction of key patient characteristics from free text, an infrequently used resource in nephrology.
Copyright © 2022 National Kidney Foundation, Inc. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Machine learning; NLP; Nephrology

Mesh:

Year:  2022        PMID: 36253030      PMCID: PMC9586467          DOI: 10.1053/j.ackd.2022.07.001

Source DB:  PubMed          Journal:  Adv Chronic Kidney Dis        ISSN: 1548-5595            Impact factor:   4.305


  33 in total

1.  SNOMED RT: a reference terminology for health care.

Authors:  K A Spackman; K E Campbell; R A Côté
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

2.  Replacing personally-identifying information in medical records, the Scrub system.

Authors:  L Sweeney
Journal:  Proc AMIA Annu Fall Symp       Date:  1996

3.  A Concept-Wide Association Study of Clinical Notes to Discover New Predictors of Kidney Failure.

Authors:  Karandeep Singh; Rebecca A Betensky; Adam Wright; Gary C Curhan; David W Bates; Sushrut S Waikar
Journal:  Clin J Am Soc Nephrol       Date:  2016-10-10       Impact factor: 8.237

4.  A general natural-language text processor for clinical radiology.

Authors:  C Friedman; P O Alderson; J H Austin; J J Cimino; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

5.  Prevalence, severity, and importance of physical and emotional symptoms in chronic hemodialysis patients.

Authors:  Steven D Weisbord; Linda F Fried; Robert M Arnold; Michael J Fine; David J Levenson; Rolf A Peterson; Galen E Switzer
Journal:  J Am Soc Nephrol       Date:  2005-06-23       Impact factor: 10.121

6.  Improving performance of natural language processing part-of-speech tagging on clinical narratives through domain adaptation.

Authors:  Jeffrey P Ferraro; Hal Daumé; Scott L Duvall; Wendy W Chapman; Henk Harkema; Peter J Haug
Journal:  J Am Med Inform Assoc       Date:  2013-03-13       Impact factor: 4.497

Review 7.  What can natural language processing do for clinical decision support?

Authors:  Dina Demner-Fushman; Wendy W Chapman; Clement J McDonald
Journal:  J Biomed Inform       Date:  2009-08-13       Impact factor: 6.317

8.  Evaluation of a deidentification (De-Id) software engine to share pathology reports and clinical documents for research.

Authors:  Dilip Gupta; Melissa Saul; John Gilbertson
Journal:  Am J Clin Pathol       Date:  2004-02       Impact factor: 2.493

9.  Next-generation phenotyping of electronic health records.

Authors:  George Hripcsak; David J Albers
Journal:  J Am Med Inform Assoc       Date:  2012-09-06       Impact factor: 4.497

10.  BioBERT: a pre-trained biomedical language representation model for biomedical text mining.

Authors:  Jinhyuk Lee; Wonjin Yoon; Sungdong Kim; Donghyeon Kim; Sunkyu Kim; Chan Ho So; Jaewoo Kang
Journal:  Bioinformatics       Date:  2020-02-15       Impact factor: 6.937

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.