Martin D Witte1, Adriaan J Minnaard1. 1. Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.
Abstract
Oligosaccharides, either as such or as part of glycolipids, glycopeptides, or glycoproteins, are ubiquitous in nature and fulfill important roles in the living cell. Also in medicine and to some extent in materials, oligosaccharides play an important role. In order to study their function, modifying naturally occurring oligosaccharides, and building in reactive groups and reporter groups in oligosaccharides, are key strategies. The development of oligosaccharides as drugs, or vaccines, requires the introduction of subtle modifications in the structure of oligosaccharides to optimize efficacy and, in the case of antibiotics, circumvent bacterial resistance. Provided the natural oligosaccharide is available, site-selective modification is an attractive approach as total synthesis of the target is often very laborious. Researchers in catalysis areas, such as transition-metal catalysis, enzyme catalysis, organocatalysis, and photoredox catalysis, have made considerable progress in the development of site-selective and late-stage modification methods for mono- and oligosaccharides. It is foreseen that the fields of enzymatic modification of glycans and the chemical modification of (oligo)saccharides will approach and potentially meet each other, but there is a lot to learn and discover before this will be the case.
Oligosaccharides, either as such or as part of glycolipids, glycopeptides, or glycoproteins, are ubiquitous in nature and fulfill important roles in the living cell. Also in medicine and to some extent in materials, oligosaccharides play an important role. In order to study their function, modifying naturally occurring oligosaccharides, and building in reactive groups and reporter groups in oligosaccharides, are key strategies. The development of oligosaccharides as drugs, or vaccines, requires the introduction of subtle modifications in the structure of oligosaccharides to optimize efficacy and, in the case of antibiotics, circumvent bacterial resistance. Provided the natural oligosaccharide is available, site-selective modification is an attractive approach as total synthesis of the target is often very laborious. Researchers in catalysis areas, such as transition-metal catalysis, enzyme catalysis, organocatalysis, and photoredox catalysis, have made considerable progress in the development of site-selective and late-stage modification methods for mono- and oligosaccharides. It is foreseen that the fields of enzymatic modification of glycans and the chemical modification of (oligo)saccharides will approach and potentially meet each other, but there is a lot to learn and discover before this will be the case.
Being able to modify complex organic molecules
in a selective way
is one of the challenges in organic chemistry. In particular, in the
field of natural products chemistry and in medicinal chemistry, many
compounds containing multiple functional groups are more or less readily
available. Instead of preparing analogues and derivatives of these
by carrying out a novel synthesis from slightly altered building blocks,
selective modification of the final product can be considerably more
efficient. From a fundamental chemistry point of view, site-selective
modification,[1] or in a synthesis route;
late-stage functionalization,[2] is very
interesting because it expands the knowledge we have of chemical reactivity
and shows the white spots. Developing catalysts, reagents, and reaction
conditions that discriminate among functional groups with very similar
reactivity or activate seemingly unreactive C–H bonds is at
the forefront of what we know and are able to do.[3] We are currently not yet at the stage in which site-selective
modification methods are available to prepare any product we would
like to have. Most publications in the field of site-selective modification
describe series of productive catalyst/substrate combinations, but
catalyst design and product prediction are in their infancy.Within the field of site-selective modification, carbohydrates
form a relatively distinct class of substrates. This is because the
selectivity challenge is dominated by the discrimination among the
various hydroxy groups. Whereas the anomeric hydroxy group, in so-called
“free” or “reducing” sugars, and the primary
hydroxy group in a hexopyranoside can be relatively readily singled
out, discrimination among the secondary hydroxy groups is achievable
but very challenging. These hydroxy groups do have inherent reactivity
differences, as is long known in the field of glycochemistry. In order
to steer regio- and stereoselectivity in glycosidic bond formation
between two monosaccharides, a large body of work has been devoted
to the development of protecting group strategies that exploit these
reactivity differences to single out a certain hydroxy group in the
acceptor, and protect and activate the donor, so that the bond formation
is both regio- and stereoselective.[4]Approaching the situation from the opposite direction, that is,
the selective modification of a hydroxy group in an unprotected glycoside,
requires in part the same principles, namely using the subtle reactivity
differences between the hydroxy groups, combined with neighboring
group participation, chelation, and steric hindrance. Although some
pioneering studies appeared already decades ago,[5] with the development of many new synthesis and catalysis
procedures, the field is facing rapid growth and the efforts have
been reviewed several times. For a comprehensive and very thorough
overview, the recent review of Dimakos and Taylor et al. in 2018[6] is most instructive, and several overviews on
more specific parts in this field have appeared as well.[7] Therefore, this Perspective does not aim to comprehensively
review the literature but rather reflects the opinion of the authors
on the current state of the field, its embedding in carbohydrate chemistry
in general, and the directions it might evolve. The term “unprotected
carbohydrate” or “unprotected sugar” as often
used in these studies needs some specification. Glucose as such is
obviously an unprotected sugar. A glucose residue in the form of a
glycoside, e.g., the anomeric hydroxy group is substituted, is still
considered an unprotected sugar, also if the aglycon is simply methanol.
When one or more of the hydroxy groups has been protected, it is more
appropriate to speak of a partly or minimally protected sugar.
Discussion
There are several specific incentives to
study the selective modification
of carbohydrates. An important incentive can be to show the strength
and the selectivity of a method, thereby leaving the potential application
of the products to other researchers. An example in which both method
development and application are important is the preparation of rare
sugars from more commonly available ones. The physiological role of
rare sugars is often not well understood, and rare does not mean less
important, but in order to study these rare monosaccharides, availability
is key. Rare sugars are often epimers of common monosaccharides and/or
are deoxygenated on one or multiple positions. These rare sugars should
therefore be accessible in only a few steps, provided that the desired
stereocenter can be epimerized or deoxygenated selectively (for an
example see Scheme A).
Scheme 1
(A) Epimerization of the Low-Cost Monosaccharide Methyl-Glucose
Leading
to Methyl-Allose; (B) trans-to-cis Epimerization
of β-Glucosides by Transient Trapping of the Epimerization Product;
(C) cis-to-trans Epimerization of Galactosides
Right panel: explanation
of
the stereoselectivity in the epimerization reactions.
The blue spheres represent the hydride/hydrogen
atom that is being abstracted.
(A) Epimerization of the Low-Cost Monosaccharide Methyl-Glucose
Leading
to Methyl-Allose; (B) trans-to-cis Epimerization
of β-Glucosides by Transient Trapping of the Epimerization Product;
(C) cis-to-trans Epimerization of Galactosides
Right panel: explanation
of
the stereoselectivity in the epimerization reactions.The blue spheres represent the hydride/hydrogen
atom that is being abstracted.Traditionally,
these reactions are either performed on suitably
protected monosaccharides (for an overview of the methods to synthesize
allose using protecting groups, see a recent review)[8] or enzymatically. The use of enzymes in these epimerization
reactions mostly requires the unprotected reducing sugars. There is
a flourishing field of enzyme-catalyzed interconversions of monosaccharides,
often catalyzed by isomerases, and some of these interconversions
are carried out at scale (>1 kg).[9] The
processes are important mainly for food applications. It is troublesome,
though, that most of these isomerization reactions are equilibria,
and isolation of the product can therefore be challenging. The use
of these enzymes in chemical carbohydrate synthesis is rare, also
because the latter approach nearly invariably works with protected,
organic soluble, substrates. Next to isomerases, a few oxidizing enzymes
are well-known. In particular glucose oxidase and galactose oxidase
are very versatile but have a strict substrate scope.[10]Site-selective modification methods that allow the
epimerization
of hydroxy groups in the absence of protecting groups and with the
same precision as enzymes, but without the strict substrate preferences,
overcome important limitations of both chemical and enzymatic methods,
in particular when applied on isolated oligosaccharides (vide
infra). In addition, glycosylation reactions of the common
monosaccharides are well described, so if modification can be effected
once such a monosaccharide has been incorporated, this facilitates
strongly the preparation of rare-sugar containing oligosaccharides.Two approaches have evolved in catalysis to epimerize stereocenters
in unprotected glucosides, namely sequential oxidation–reduction
procedures and direct inversion procedures. These are illustrated
for the conversion of methyl glucose into methyl allose (Scheme A, top part), although
there are many more examples. The C3-hydroxy group of glucose can
be oxidized regioselectively either using catalytic palladium/neocuproine
in combination with oxygen or benzoquinone,[11] or alternatively using a photoredox catalyst system in combination
with oxygen.[12,13] An axial anomeric substituent
blocks axial attack of the reducing agent. Therefore, the subsequent
reduction leads, in the case of α-glucose derivatives, to the
corresponding allose analogues (Scheme A). Of note, an analogous transfer hydrogenation method
has been developed to oxidize and epimerize hydroxy groups in aglycons.
This method does not touch the carbohydrate (see the work of Hartwig
et al.).[14]An alternative to the
sequential oxidation–reduction method
is the direct inversion of the C3-hydroxy group. Elegant photoredox
catalyst systems have been developed that epimerize the hydroxy group
via hydrogen atom abstraction (HAA) and readdition using a hydrogen
atom donor (HAD).[15] With these systems,
trans-configured glucosides can be isomerized into the less stable
cis-configured allosides (Scheme A, bottom part). The first reported system uses quinuclidine
in combination with 4-CzlPN and adamantane thiol as hydrogen atom
donor to convert glucosides efficiently to allosides. The site-selectivity
is determined in the hydrogen abstraction step. The quinuclidine radical
preferentially abstract the hydrogen atom at the C-3 position of glucosides,
as was also observed in photoalkylation reactions.[16] The bulky hydrogen atom donor is likely essential to drive
the trans-to-cis isomerization. As for the reductions of 3-ketoglucosides
(vide supra), H-atom abstraction by the C3-centered
radical will preferentially occur from the equatorial face, the axial
face being blocked by the anomeric substituent (Scheme A). Blocking of the axial face has also been
shown to determine the selectivities in photoalkylation reactions
and deoxy-chlorination reactions.[16,17] The same mechanism
is likely determining the selectivity in the recently reported photoalkylation
of myo-inositol.[18] Recently, a second catalyst
system was developed, which converts β-glucosides into β-allosides
(Scheme B). This system
uses the decatungstate anion and thiophenol catalyst pair. This sterically
hindered decatungstate abstracts the most accessible H atom, whereas
thiophenol in the hydrogen transfer reaction does not suffer from
steric hindrance. To drive the trans-to-cis isomerization, the cis-diol
has to be transiently trapped as the methyl boronate ester, which
makes the cis-diol thermodynamically more favorable (Scheme B).[19] The C3 position in α-glucosides, on the contrary, is not accessible
for the decatungstate catalyst and therefore the C2 position is epimerized
in these substrates. Moreover, in the absence of the boronate trapping
agent, this catalyst system can be used to epimerize axial alcohols
into equatorial alcohols, as was shown for galactosides (Scheme C).[20] Finally, it was recently shown that direct epimerization
of 1,2-trans to 1,2-cis diols in partly protected carbohydrates can
be achieved with boron-mediated ruthenium-catalyzed hydrogen-borrowing/hydrogen
transfer reactions, see the work of W. Tang et al.[21] It will not be trivial, if possible at all, to dissect
for all these reactions the kinetic and thermodynamic contribution
to the observed regio- and stereoselectivity. To give an example,
it has been shown by thorough computational studies using relativistic
density functional theory that palladium-catalyzed oxidation in pyranoses
preferentially takes place at C3 because the ring oxygen impedes the
build-up of positive charge at C2 and C4 going to the transition state.
The ΔG of the three keto-pyranoses differs
only slightly.[22] Still, upon oxidation
at C4 mediated by a tin acetal, epimerization to the 3-ketopyranose
readily happens. A different example is the epimerization of pyranoses
in the work of MacMillan in which the intermediate cyclic boronate
equilibrates to the thermodynamically favored product but after hydrolysis,
this gives the overall “kinetic product”.[19]The large majority of the reported site-selective
modifications
are carried out on glycosides, so with the anomeric hydroxy group
substituted, because this blocks ring-opening (mutarotation), and
the anomeric hydroxy group, in general, is quite reactive. Interestingly,
both the palladium-catalyzed oxidation–sodium borohydride reduction
sequence, and the photoredox approach have also been applied directly
on α-glucose, so the reducing sugar.[23] Besides epimerization methods, also a number of deoxygenating methods
have been developed that can be used to prepare deoxygenated monosaccharides.[24]A second application for the site-selective
modification of monosaccharides
is the development of tool compounds that can be used to study the
biological function of the carbohydrate. To facilitate these studies,
the carbohydrates of interest have to be equipped with reactive groups,
for activity-based probes for example, and with labels.[25] In the case of a (latently) active group, the
use of a protecting group strategy can complicate the synthesis, as
orthogonality is required between the protecting groups and the active
group. This can be a serious issue; frequently used reactive groups
used in carbohydrate chemical biology are epoxides, (acyl)aziridines,
azirines, alkynes, and azides (Scheme A). These functional groups are a challenge to combine
with benzyl, CBz, and Boc protecting groups due to the conditions
of the removal of the latter.[26] Introducing
these reactive groups in unprotected sugars can be a solution to this
problem. The introduction of an azide functionality at a secondary
hydroxy group in unprotected sugars via late-stage modification has
rarely been reported, although the known sequence “site-selective
oxidation-reductive amination” could be coupled to azide transfer.
The stereochemistry of the amino group can be steered by the reduction
method (Scheme B).[27] Alternative, site-selective sulfonylation followed
by a substitution reaction might fill this need.[28] The introduction of an epoxide function in keto glucosides,
as well as indium-mediated allylation and propargylation, have also
shown to be effective methods to introduce chemical handles.[20] Site-divergent O-propargylation
of monosaccharides provides another means to site-selective introduce
a bio-orthogonal handle. This latter method has proven to be very
versatile, as the alkyne could be used in a later stage for the introduction
of biotin and the antiviral agent zidovudine. Furthermore, a benzophenone
functionalized reagent was developed that could be used to simultaneously
introduce a photo-cross-linker as a bio-orthogonal handle, thus giving
an affinity-based probe in a single step (Scheme C).[29]
Scheme 2
(A) Examples
of Monosaccharides as Reactivity-Based Probes; (B) Diastereoselective
Reduction Leading to Methyl 3-amino Glucose; (C) Single Step Conversion
of Carbohydrates in Affinity-Based Probes by Site-Selective Propargylation
Considering the current state of the art in
regioselective or site-selective
modification of carbohydrates, one can safely state that considerable
progress has been made in recent years, and the field is growing very
fast. The times when many groups in homogeneous catalysis would not
consider carbohydrates as possible substrates and carbohydrate chemists
would refrain from all too advanced catalysis methods are rapidly
changing.[30] The progress has become possible
in part because of the growing knowledge about the subtle differences
in reactivity of the different (secondary) hydroxy groups in a monosaccharide
(mostly in its pyranoside form) together with the advent of transition
metal catalysts that can use these subtle differences, either as such
or in combination with agents that form transient chelates with the
hydroxy groups altering their reactivity. The development of photoredox
catalysis has strongly expanded the field,[31] because carbohydrates have several advantages in this connection.
The H–O bond of a hydroxy group is relatively stable to homolytic
cleavage, so “protection” of hydroxy groups in a photochemical
reaction is not a necessity. In addition, many photochemical reactions
can be carried out in water or aqueous environment. This is an advantage
considering the polar nature of unprotected sugars. Next to this,
carbohydrates do not absorb UV/vis light. No doubt this suitability
of carbohydrates for single electron processes will also make them
applicable in electrosynthesis. There are several papers in the (older)
literature that show this as a viable option[32] but this field can be expanded considerably more.Whereas
it is beyond discussion that many selective transformations
on unprotected monosaccharides are now established, this does not
mean that the protocols are now the preferred way to make multigram
amounts of product as starting material for further synthesis. The
literature on the selective protection of monosaccharides followed
by modification of the remaining hydroxy group is so advanced that
it remains very difficult to surpass this with transformations on
unprotected starting materials. This might be illustrated by the recently
reported studies on the preparation of rare deoxy- and aminosugars.
Wendlandt et al. showed in a beautiful study that the combination
of photoredox catalysis and manganese-promoted radical migration leads
to a variety of keto-deoxy monosaccharides, versatile starting materials
for the synthesis of rare (amino) sugars.[24c] Most of these compounds had been prepared earlier using protecting
group strategies, and although the number of steps in the new photoredox
approach was significantly less, the overall yield was not necessarily
improved. A similar experience was reported earlier in the synthesis
of aminosugars using palladium-catalyzed oxidation followed by reductive
amination.[33]Without a doubt, one
of the main bottlenecks here is that unprotected
carbohydrates are difficult to isolate and purify because of their
high polarity. This is in particular the case for reducing sugars
such as glucose, which “only” dissolves in water and
dimethylsulfoxide. For di-, tri-, and oligosaccharides, this plainly
is the case as well. For the corresponding glycosides without any
lipophilic groups, the removal of salts or other water-soluble compounds
is very difficult and the desired products do not readily elute from
a silica column. This is reflected in literature; the procedures reported
for the site-selective modification of monosaccharides are reported
typically on mmol scale and provide “acceptable” but
not excellent yields, and are not yet used to prepare the multigram
amounts of starting material required for carbohydrate synthesis.
The field would benefit from novel, preparative, methods for the purification
of unprotected carbohydrates. Whereas on an analytical scale, High-Performance
Liquid Chromatography (HPLC) methods based on polarity differences
(Dionex, HILIC) and GC methods (using persilylation and pertrifluoroacetylation
as derivatization methods) are well-established, the situation is
less bright for straightforward preparative purification methods,
except when crystallization can be used. Preparative HPLC is expensive
and available only in specialized laboratories. “Bench-top”
methods which are regularly used are column chromatography with diol-coated
silica and dichloromethane/methanol or chloroform/methanol as the
eluent. Alternatively, chelation chromatography (an ion exchange column
charged with calcium or barium) or size exclusion chromatography can
be used but the loading of these columns is limited. Classical “reverse
phase” column chromatography using activated carbon as the
stationary phase is occasionally applied using water/t-butanol as the eluent.[34] The problem here
is that pressure cannot be used readily as this blocks the column,
and in addition “activated carbon” is not sufficiently
defined to guarantee reproducible results in different laboratories.Solving the purification issues may make site-selective modification
of unprotected monosaccharides more main-stream and can lead in some
cases to replacement of existing protecting group-based routes but
for many substrates it will remain difficult to compete with the well-established
routes that employ protecting groups or enzymatic modification. The
most important power of the site-selective methods lies in our opinion
therefore also not in monosaccharide modification, but in the possibility
to manipulate di- and oligosaccharides.The modification of
monosaccharides, either with or without the
use of protecting groups, is an active research field, but the challenges
increase even more when we move from monosaccharides to di-, tri-,
and even oligosaccharides.[35] The modification
of a single hydroxy group in members of these compound classes is
very difficult. The rapidly increasing number of hydroxy groups simply
does not allow a condensed all-but-one protection approach, and targeting
one hydroxy group with a protecting group strategy is challenging
as well. This often leads to the alternative; a bottom-up approach
in which the oligosaccharide is prepared ab initio using the modified monosaccharide building blocks. This is a secure
and reliable strategy but also comes with a large investment in effort
and time. In particular, in cases in which the natural saccharide
is available, a considerably more attractive scenario is site-selective,
or late-stage, modification. Provided this can be done with sufficient
fidelity, ánd the purification of the desired product is doable,
this strongly facilitates the preparation of modified di-, tri-, and
oligosaccharides. Two pioneering studies showed already that the site-selective
modification of monosaccharide residues in the complex drugs erythromycin
and vancomycin is possible.[36]It
is clear, though, that the site-selective modification of oligosaccharides
is still in its infancy, although the first steps forward have been
made in the past years. The reagent or catalyst used should not only
discriminate between the different hydroxy groups in one saccharide
unit but also discriminate between the different saccharide units
in the substrate. This requires a somewhat different approach in the
development of a site-selective method. Relative reaction rates become
important, e.g., which monosaccharide is most reactive in a given
reaction. Seemingly negative results in the monosaccharide series,
substrates reacting only very slowly, become of key importance in
the modification of oligosaccharides containing different units, which
we illustrate below for two examples. For the palladium/neocuproine
catalyzed oxidation reaction, we found in competition experiments
that glucopyranosides can be oxidized with acceptable selectivity
in the presence of manno- and galactopyranosides (Scheme A).[37] We realized that these results suggest that gluco-configured units
may be oxidized in glycans that also contain differently configured
pyranosides and we recently exploited this in the selective oxidation
of the antibiotics kanamycin and neomycin, a tri- and a tetrasaccharide,
respectively (Scheme B).[38] Admittedly, the amino groups in
these substrates were protected. Of note, for an example in which
selectively one of the amino groups in an aminoglycoside was modified,
see the work of Bastian and Herrmann.[39] Similarly, reactivity differences in photocatalytic systems can
be used to selectively modify a residue within a di or oligosaccharide.
From our initial study on photoalkylation, it was already clear that
galactosides and mannosides react differently from glucosides (Scheme A).[40] Since then, efforts have been directed to determine the
reactivity differences of monosaccharides, including computational
studies that determined the effect of the configuration on bond-dissociation
energies.[41] From the substrate scope-studies
in these papers, it is apparent that quinuclidine-catalyzed H-atom
abstraction proceeds preferentially on the C3-position of α-glucosides.
Galactosides and mannosides do react only slowly at C3 and/or have
an altered site-selectivity. Additives that chelate to a cis-diol
can increase the reactivity, but lead to preferential H-atom abstraction
at the carbon carrying the axial hydroxyl group.[42] Interestingly, hydrogen atom abstraction on the C3-position
is rather efficient when galactosides and mannosides are present in
the corresponding 1,6 anhydro form, suggesting that the orientation
of the hydroxy groups relative to the hydrogen that is being abstracted
by the quinuclidine radical is of importance (Scheme A). The preference of the quinuclidine radical
cation for α-glucosides can and has been exploited by the groups
of Wendlandt, Taylor, and Liu and Wang to photochemically epimerize,
oxidize, and alkylate the glucose residue in the disaccharide sucrose
and the trisaccharide raffinose (Scheme C).[43] The group
of Wang even applied this to functionalize aminoglycosides. These
two examples illustrate the importance of screening modification reactions
on differently configured monosaccharides, and determining the relative
reactivity of these substrates. Reactions that only proceed well on
a particular substrate are ideal for the modification of oligosaccharides.
Scheme 3
Site-Selective Oxidation in Oligosaccharides; (A) Reactivity Differences
among Glucosides, Galactosides and mannosides; (B) Pd Catalyzed Oxidation
of the Gluco-Configured Residue in Neomycin; (C) Site-Selectivities
of Quinuclidine and Decatungstate Mediated Reactions in Raffinose;
(D) Site-Selective Oxidation and Further Functionalization of Oligomaltosides
The blue spheres
represent
the hydride/hydrogen atom that is being abstracted.
Site-Selective Oxidation in Oligosaccharides; (A) Reactivity Differences
among Glucosides, Galactosides and mannosides; (B) Pd Catalyzed Oxidation
of the Gluco-Configured Residue in Neomycin; (C) Site-Selectivities
of Quinuclidine and Decatungstate Mediated Reactions in Raffinose;
(D) Site-Selective Oxidation and Further Functionalization of Oligomaltosides
The blue spheres
represent
the hydride/hydrogen atom that is being abstracted.Nevertheless, this hierarchy in reactivity of monomeric
sugars
might not directly translate to oligosaccharides in which these monomers
are present. Steric factors also play an important role in the selective
modification of oligosaccharides, as is evident from our study on
the oxidation of oligosaccharides (Scheme D).[33] The reactivity
difference in the oxidation of oligomaltoses by the palladium/neocuproine
catalyst is solely based on steric effects in the entire oligosaccharides
rather than reactivity difference within the monosaccharides. With
high selectivity, the terminal residue in a series of oligomaltoses
was oxidized at the C3 position, because the inherent reactivity of
this position could be combined with the terminal residue being most
accessible.Apart from being a rather spectacular result, one
hydroxy group
out of 27 being selectively oxidized, the keto function in the product
could be converted into an epoxide and in this way produced an affinity-based
probe for maltose-binding protein.[25] Very
recently, an alternative approach to prepare oligomaltosides modified
at the anomeric center and the terminal residue was reported. Full
protection of cyclodextrins, followed by ring opening, provided an
orthogonally substituted anomeric center and a free hydroxy group
at C4 of the terminal residue. Provided the deprotection conditions
are compatible with the active group introduced at C4, this is a versatile
alternative.[44]The importance of
steric factors is further illustrated by the
photochemical epimerization of raffinose. The decatungstate catalyst
abstracts much more readily the accessible equatorial H atoms next
to an axial hydroxy substituent. This preference enabled the epimerization
of the C4-OH of the galactose residue in raffinose, yielding theanderose
(Scheme C).[45]From these findings, it is clear that
model substrates are highly
needed to probe the effect of sterics on different site-selective
modification reactions and to better predict the outcome on a di/oligosaccharide.
We have shown that THP-protected sugars may be used for these studies,
provided that they do not react under the conditions used.[35]A third approach to induce site selectivity
in oligosaccharides
is to “cloak” the substrate in a supramolecular fashion.
Cracks in this cloak should then allow site-selective modifications.
Bastian and Herrmann used RNA-aptamers, which are negatively charged,
to bind to the positively charged aminoglycoside neomycin. Subsequently,
site-selective amidation was achieved (Scheme ).[46] Despite this
success, scalability and finding the right “cloacking agent”
is a serious issue here as in many supramolecular approaches. It remains
to be seen whether this approach can be used on glycans as well. Nonetheless,
this approach provides an elegant way to single out a reactive center
and combining these supramolecular methods with the (photo)catalytic
systems might increase the selectivity of the latter systems.
Scheme 4
Site-Selective Amidation of Neomycin, Using RNA-Aptamers
Representation of
neomycin
bound to the RNA aptamer was generated from PDB code: 1NEM with UCSF Chimera
version 1.14.[47]
Site-Selective Amidation of Neomycin, Using RNA-Aptamers
Representation of
neomycin
bound to the RNA aptamer was generated from PDB code: 1NEM with UCSF Chimera
version 1.14.[47]We foresee that the next leap from oligosaccharides will be the
modification of glycans. From the viewpoint of (chemical) biology,
being able to modify oligosaccharides is still largely an unmet need.
Oligosaccharides function as antigens and recognition elements, and
in addition to being present as such, many of these structures occur
in conjugation with lipids (glycolipids), and peptides (glycopeptides)
and connected to proteins (glycoproteins) and are referred to as glycans.
It is well recognized that the application of chemical biology to
these oligosaccharides, including glycans, broadens and deepens our
knowledge of how a cell works. A potential next step is the application
of this knowledge in medicine, in particular in the development of
diagnostics and vaccines. The modification of oligosaccharides, composed
of several different monosaccharide units in an endless array of possible
connection modes, is already challenging, but this challenge becomes
even bigger when changes have to be made in glycans because the aglycon
(a lipid, peptide or protein) can interfere with the reaction. In
particular proteins, and to a lesser extend peptides, are “reactive”
in the sense that functional groups such as amino groups and thiols
are more reactive than the hydroxy groups of the carbohydrate. It
requires extensive research to develop chemical tools to selectively
modify a certain carbohydrate residue in a glycan of a glycopeptide
or protein. The first hesitating steps in this direction have been
made.[48,49] As an example, it turned out that glucose
residues in several peptides could be oxidized with reasonable selectivity.[50] The resulting ketone function was subsequently
used to ligate the glycopeptide to biotin, for analysis by mass spectrometry.
Specific fragments of a digested glycoprotein could in this way be
identified (Scheme ). The study showed the limitations of this method as well, because
the palladium catalyst coordinated to the peptides and also serine
and threonine residues were to some extent oxidized. A more advanced
example comes from the work of Arnold, who used mutagenesis for the
modification of the earlier mentioned galactose oxidase. The modified
enzyme was able to oxidize galactose in some glycans selectively.[51]
Scheme 5
Site-Selective Oxidation of a Glycopeptide,
Followed by Ligation
with a Biotin Label Enables the Detection of Glucosylated Peptides
A final research area in which we foresee that
site-selective modification
of unproctected carbohydrates will become more important is in the de novo synthesis of oligosaccharides. Glycosidic bond formation
is at the heart of carbohydrate synthesis and performing this with
partly protected monosaccharides is both challenging and important.
There is considerable progress in the use of partially protected monosaccharides
in combination with additives such as boronic acids, borinic acids
and organotin reagents.[52] These additives
are used either to temporarily protect hydroxyl groups or to selectively
activate hydroxy groups. This can be viewed as a special case of site-selective
modification. In principle, two versions of this approach can be distinguished,
one in which either the substrate (the acceptor) or the donor is unprotected,
but the other reaction partner is protected, and one in which both
are unprotected. While glycosylation with partly protected donors
and acceptors has been studied in some detail, protecting group free
glycosylation is an era that has just started. Only a few papers describe
the latter approach. Key to a successful glycosidic bond formation
between unprotected donors and acceptors is that the donor is only
moderately electrophilic. Reactive donors will rapidly hydrolyze under
aqueous conditions and will have a poor regioselectivity. Simultaneously,
the acceptor should be a good nucleophile to facilitate the substitution
reaction. Since alcohols are relatively poor nucleophiles, additives
are needed to activate the hydroxy group that needs be modified. Ideally,
the same additives can also activate the donor, which could allow
complexation-induced glycosylation (Scheme A). This is nicely illustrated by the work
of Miller, Schepartz, and co-workers.[53] They demonstrated that glycosyl fluorides are suitable donors for
the protecting group free glycosylation of sucrose derivatives. In
the presence of calcium triflate and trimethylamine as a base, sucrose
could be site-selectively glycosylated (Scheme B). The selectivity derived from an intricate
hydrogen bonding network in the acceptor and could be tuned by changing
the reaction conditions. This approach was recently expanded to glycosylate
tyrosine residues in peptides (Scheme C). Using glycosyl fluoride as donors and Ca(OH)2 as a promotor, tyrosine residues in the peptides glucagon,
endomorphin-2, and leu-enkephalin could be modified efficiently.[54] Under these conditions, thiols also react with
glycosyl fluorides and this has been used in the protection group
free synthesis of thioglycosides and thioglycopeptides (Scheme C).[55] In a very recent and beautiful paper, Fairbanks et al.[56] showed that other activation methods also can
be used to connect two unprotected monosaccharides (Scheme D). GlcNAc derivatives can
be smoothly converted into oxazolines with DMC and triethylamine.
Activation of the donor with p-toluenesulfonic acid allowed glycosylation
of various monosaccharides. As the C6 hydroxy group of the acceptor
is used, the problem to distinguish between all the hydroxy groups
is at least largely avoided. Eventual regioselectivity issues are
further alleviated by using an excess of acceptor (5 equiv compared
to the donor). At the moment, the methods to connect unprotected monosaccharides
are still highly substrate dependent. For example, the method of Fairbanks
can only be applied using GlcNAc donors and the method of Miller and
Schepartz only works for sucrose acceptors. However, lessons learned
from the partly protected monosaccharides, such as organocatalysts
like in a recent contribution from Wendlandt and Jacobsen et al.,[57] that allow discriminating between the secondary
hydroxy groups in the acceptor can eventually be translated to the
fully unprotected carbohydrates.[58]
Scheme 6
(A) Schematic Representation of Complexation-Induced Glycosidic Bond
Forming Reactions with Unprotected Glycosides as Proposed by Miller
and Schepartz; (B) Protecting Group Free Site-Selective Glycosylation
of Sucrose; (C) Protecting Group Free Site-Selective Glycosylation
of Peptides and Thioglycosides; (D) Protecting Group Free Glycosylation
Procedure Developed by Fairbanks
Conclusions
In conclusion, site-selective modification
of carbohydrates mainly
originates from the field of homogeneous catalysis and to some extent
from supramolecular chemistry. The enzymatic modification of oligosaccharides
originates from biotechnology and biomolecular chemistry. These fields
are now developing to reach the same goal, site-selective protective
group free modification of saccharides in complex biomolecules. All
these fields will have to contribute to reach these goals mentioned,
and as is often the case, the biggest steps might result from a combination
of these powerful tools. As major directions in the research on site-selective
modification of oligosaccharides, we like to highlight the potential
to modify these in the presence of amino groups, like in aminoglycosides,
and thiols, such as in peptides and proteins. A second challenge is
the chemical glycosylation of (largely) unprotected carbohydrates.
It would be great if a bridge could be built between this approach
and enzymatic glycosidic bond formation.
Authors: Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin Journal: J Comput Chem Date: 2004-10 Impact factor: 3.376
Authors: Nittert Marinus; Nabil Tahiri; Margherita Duca; L M C Marc Mouthaan; Simona Bianca; Marco van den Noort; Bert Poolman; Martin D Witte; Adriaan J Minnaard Journal: Org Lett Date: 2020-07-07 Impact factor: 6.005
Authors: Andreas A Bastian; Maria Bastian; Manuel Jäger; Mark Loznik; Eliza M Warszawik; Xintong Yang; Nabil Tahiri; Peter Fodran; Martin D Witte; Anne Thoma; Jens Köhler; Adriaan J Minnaard; Andreas Herrmann Journal: Chemistry Date: 2022-05-17 Impact factor: 5.020