Literature DB >> 36240756

Machine learning for determining lateral flow device results for testing of SARS-CoV-2 infection in asymptomatic populations.

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Abstract

Rapid antigen tests in the form of lateral flow devices (LFDs) allow testing of a large population for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To reduce the variability in device interpretation, we show the design and testing of an artifical intelligence (AI) algorithm based on machine learning. The machine learning (ML) algorithm is trained on a combination of artificially hybridized LFDs and LFD data linked to quantitative real-time PCR results. Participants are recruited from assisted test sites (ATSs) and health care workers undertaking self-testing, and images are analyzed using the ML algorithm. A panel of trained clinicians is used to resolve discrepancies. In total, 115,316 images are returned. In the ATS substudy, sensitivity increased from 92.08% to 97.6% and specificity from 99.85% to 99.99%. In the self-read substudy, sensitivity increased from 16.00% to 100% and specificity from 99.15% to 99.40%. An ML-based classifier of LFD results outperforms human reads in assisted testing sites and self-reading.
Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  AI; COVID-19; lateral flow device; machine learning

Mesh:

Year:  2022        PMID: 36240756      PMCID: PMC9513327          DOI: 10.1016/j.xcrm.2022.100784

Source DB:  PubMed          Journal:  Cell Rep Med        ISSN: 2666-3791


  11 in total

1.  How to establish an academic SARS-CoV-2 testing laboratory.

Authors:  Alex Richter; Tim Plant; Michael Kidd; Andrew Bosworth; Megan Mayhew; Oliver Megram; Fiona Ashworth; Liam Crawford; Thomas White; Emma Moles-Garcia; Jeremy Mirza; Benita Percival; Alan McNally
Journal:  Nat Microbiol       Date:  2020-12       Impact factor: 17.745

2.  The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia.

Authors:  Stefan Flasche; Sebastian Funk; Martin Pavelka; Kevin Van-Zandvoort; Sam Abbott; Katharine Sherratt; Marek Majdan; Pavol Jarčuška; Marek Krajčí
Journal:  Science       Date:  2021-03-23       Impact factor: 47.728

3.  Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infectivity by Viral Load, S Gene Variants and Demographic Factors, and the Utility of Lateral Flow Devices to Prevent Transmission.

Authors:  Lennard Y W Lee; Stefan Rozmanowski; Matthew Pang; Andre Charlett; Charlotte Anderson; Gareth J Hughes; Matthew Barnard; Leon Peto; Richard Vipond; Alex Sienkiewicz; Susan Hopkins; John Bell; Derrick W Crook; Nick Gent; A Sarah Walker; Tim E A Peto; David W Eyre
Journal:  Clin Infect Dis       Date:  2022-02-11       Impact factor: 9.079

4.  Viral RNA load as determined by cell culture as a management tool for discharge of SARS-CoV-2 patients from infectious disease wards.

Authors:  Bernard La Scola; Marion Le Bideau; Julien Andreani; Van Thuan Hoang; Clio Grimaldier; Philippe Colson; Philippe Gautret; Didier Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2020-04-27       Impact factor: 3.267

5.  SARS-CoV-2, SARS-CoV, and MERS-CoV viral load dynamics, duration of viral shedding, and infectiousness: a systematic review and meta-analysis.

Authors:  Muge Cevik; Matthew Tate; Ollie Lloyd; Alberto Enrico Maraolo; Jenna Schafers; Antonia Ho
Journal:  Lancet Microbe       Date:  2020-11-19

6.  On the Challenges for the Diagnosis of SARS-CoV-2 Based on a Review of Current Methodologies.

Authors:  Isabela A Mattioli; Ayaz Hassan; Osvaldo N Oliveira; Frank N Crespilho
Journal:  ACS Sens       Date:  2020-12-03       Impact factor: 7.711

7.  Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and asymptomatic populations.

Authors:  Anetta Ptasinska; Celina Whalley; Andrew Bosworth; Charlotte Poxon; Claire Bryer; Nicholas Machin; Seden Grippon; Emma L Wise; Bryony Armson; Emma L A Howson; Alice Goring; Gemma Snell; Jade Forster; Chris Mattocks; Sarah Frampton; Rebecca Anderson; David Cleary; Joe Parker; Konstantinos Boukas; Nichola Graham; Doriana Cellura; Emma Garratt; Rachel Skilton; Hana Sheldon; Alla Collins; Nusreen Ahmad; Simon Friar; Daniel Burns; Tim Williams; Keith M Godfrey; Zandra Deans; Angela Douglas; Sue Hill; Michael Kidd; Deborah Porter; Stephen P Kidd; Nicholas J Cortes; Veronica Fowler; Tony Williams; Alex Richter; Andrew D Beggs
Journal:  Clin Microbiol Infect       Date:  2021-04-24       Impact factor: 8.067

8.  Deep learning of HIV field-based rapid tests.

Authors:  Valérian Turbé; Carina Herbst; Thobeka Mngomezulu; Sepehr Meshkinfamfard; Nondumiso Dlamini; Thembani Mhlongo; Theresa Smit; Valeriia Cherepanova; Koki Shimada; Jobie Budd; Nestor Arsenov; Steven Gray; Deenan Pillay; Kobus Herbst; Maryam Shahmanesh; Rachel A McKendry
Journal:  Nat Med       Date:  2021-06-17       Impact factor: 53.440

9.  Unbiased estimation for response adaptive clinical trials.

Authors:  Jack Bowden; Lorenzo Trippa
Journal:  Stat Methods Med Res       Date:  2015-08-11       Impact factor: 3.021

10.  SARS-CoV-2 seroprevalence and asymptomatic viral carriage in healthcare workers: a cross-sectional study.

Authors:  Adrian Shields; Sian E Faustini; Marisol Perez-Toledo; Sian Jossi; Erin Aldera; Joel D Allen; Saly Al-Taei; Claire Backhouse; Andrew Bosworth; Lyndsey A Dunbar; Daniel Ebanks; Beena Emmanuel; Mark Garvey; Joanna Gray; I Michael Kidd; Golaleh McGinnell; Dee E McLoughlin; Gabriella Morley; Joanna O'Neill; Danai Papakonstantinou; Oliver Pickles; Charlotte Poxon; Megan Richter; Eloise M Walker; Kasun Wanigasooriya; Yasunori Watanabe; Celina Whalley; Agnieszka E Zielinska; Max Crispin; David C Wraith; Andrew D Beggs; Adam F Cunningham; Mark T Drayson; Alex G Richter
Journal:  Thorax       Date:  2020-09-11       Impact factor: 9.139

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