Literature DB >> 34140702

Deep learning of HIV field-based rapid tests.

Valérian Turbé1, Carina Herbst2, Thobeka Mngomezulu2, Sepehr Meshkinfamfard3, Nondumiso Dlamini2, Thembani Mhlongo2, Theresa Smit2, Valeriia Cherepanova4, Koki Shimada4, Jobie Budd3,5, Nestor Arsenov3, Steven Gray6, Deenan Pillay2,7, Kobus Herbst8,9, Maryam Shahmanesh10,11, Rachel A McKendry12,13.   

Abstract

Although deep learning algorithms show increasing promise for disease diagnosis, their use with rapid diagnostic tests performed in the field has not been extensively tested. Here we use deep learning to classify images of rapid human immunodeficiency virus (HIV) tests acquired in rural South Africa. Using newly developed image capture protocols with the Samsung SM-P585 tablet, 60 fieldworkers routinely collected images of HIV lateral flow tests. From a library of 11,374 images, deep learning algorithms were trained to classify tests as positive or negative. A pilot field study of the algorithms deployed as a mobile application demonstrated high levels of sensitivity (97.8%) and specificity (100%) compared with traditional visual interpretation by humans-experienced nurses and newly trained community health worker staff-and reduced the number of false positives and false negatives. Our findings lay the foundations for a new paradigm of deep learning-enabled diagnostics in low- and middle-income countries, termed REASSURED diagnostics1, an acronym for real-time connectivity, ease of specimen collection, affordable, sensitive, specific, user-friendly, rapid, equipment-free and deliverable. Such diagnostics have the potential to provide a platform for workforce training, quality assurance, decision support and mobile connectivity to inform disease control strategies, strengthen healthcare system efficiency and improve patient outcomes and outbreak management in emerging infections.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2021        PMID: 34140702      PMCID: PMC7611654          DOI: 10.1038/s41591-021-01384-9

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  34 in total

1.  Use of a rapid HIV testing algorithm to improve linkage to care.

Authors:  Eugene G Martin; Gratian Salaru; Sindy M Paul; Evan M Cadoff
Journal:  J Clin Virol       Date:  2011-10-07       Impact factor: 3.168

2.  Limitations of rapid HIV-1 tests during screening for trials in Uganda: diagnostic test accuracy study.

Authors:  Ronald H Gray; Fredrick Makumbi; David Serwadda; Tom Lutalo; Fred Nalugoda; Pius Opendi; Godfrey Kigozi; Steven J Reynolds; Nelson K Sewankambo; Maria J Wawer
Journal:  BMJ       Date:  2007-06-01

3.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

4.  A smartphone dongle for diagnosis of infectious diseases at the point of care.

Authors:  Tassaneewan Laksanasopin; Tiffany W Guo; Samiksha Nayak; Archana A Sridhara; Shi Xie; Owolabi O Olowookere; Paolo Cadinu; Fanxing Meng; Natalie H Chee; Jiyoon Kim; Curtis D Chin; Elisaphane Munyazesa; Placidie Mugwaneza; Alex J Rai; Veronicah Mugisha; Arnold R Castro; David Steinmiller; Vincent Linder; Jessica E Justman; Sabin Nsanzimana; Samuel K Sia
Journal:  Sci Transl Med       Date:  2015-02-04       Impact factor: 17.956

5.  Assessment of the implementation of HIV-rapid test kits at different levels of health institutions in Ethiopia.

Authors:  Belete Tegbaru; Dawit Wolday; Tsehaynesh Messele; Hailu Meless; Desta Kassa; Desalegn Tesema; Wogene Tamene; Zinet Ahmedin; Asfaw Adane; Mekashaw Tebeje; Negussie Gezahegn; Hiwot Birhanu; Yohannes Mengistu; Tadesse Wuhib; Makonnen Fekadu
Journal:  Ethiop Med J       Date:  2007-07

6.  The effectiveness and cost-effectiveness of community-based lay distribution of HIV self-tests in increasing uptake of HIV testing among adults in rural Malawi and rural and peri-urban Zambia: protocol for STAR (self-testing for Africa) cluster randomized evaluations.

Authors:  Melissa Neuman; Pitchaya Indravudh; Richard Chilongosi; Marc d'Elbée; Nicola Desmond; Katherine Fielding; Bernadette Hensen; Cheryl Johnson; Phillip Mkandawire; Alwyn Mwinga; Mutinta Nalubamba; Gertrude Ncube; Lot Nyirenda; Rose Nyrienda; Eveline Otte Im Kampe; Miriam Taegtmeyer; Fern Terris-Prestholt; Helen A Weiss; Karin Hatzold; Helen Ayles; Elizabeth L Corbett
Journal:  BMC Public Health       Date:  2018-11-06       Impact factor: 3.295

7.  Rapid Syphilis Tests as Catalysts for Health Systems Strengthening: A Case Study from Peru.

Authors:  Patricia J García; César P Cárcamo; Marina Chiappe; Maria Valderrama; Sayda La Rosa; King K Holmes; David C W Mabey; Rosanna W Peeling
Journal:  PLoS One       Date:  2013-06-26       Impact factor: 3.240

Review 8.  Opportunities and obstacles for deep learning in biology and medicine.

Authors:  Travers Ching; Daniel S Himmelstein; Brett K Beaulieu-Jones; Alexandr A Kalinin; Brian T Do; Gregory P Way; Enrico Ferrero; Paul-Michael Agapow; Michael Zietz; Michael M Hoffman; Wei Xie; Gail L Rosen; Benjamin J Lengerich; Johnny Israeli; Jack Lanchantin; Stephen Woloszynek; Anne E Carpenter; Avanti Shrikumar; Jinbo Xu; Evan M Cofer; Christopher A Lavender; Srinivas C Turaga; Amr M Alexandari; Zhiyong Lu; David J Harris; Dave DeCaprio; Yanjun Qi; Anshul Kundaje; Yifan Peng; Laura K Wiley; Marwin H S Segler; Simina M Boca; S Joshua Swamidass; Austin Huang; Anthony Gitter; Casey S Greene
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.293

9.  Young people's perceptions of smartphone-enabled self-testing and online care for sexually transmitted infections: qualitative interview study.

Authors:  Catherine R H Aicken; Sebastian S Fuller; Lorna J Sutcliffe; Claudia S Estcourt; Voula Gkatzidou; Pippa Oakeshott; Kate Hone; S Tariq Sadiq; Pam Sonnenberg; Maryam Shahmanesh
Journal:  BMC Public Health       Date:  2016-09-13       Impact factor: 3.295

10.  The World Health Organization African region external quality assessment scheme for anti-HIV serology.

Authors:  Fatim Cham; Mahlatse Maleka; Martin Masango; Emma Goetsch; El H Belabbes; Beverley Singh; Guy M Gershy-Damet; Adrian Puren
Journal:  Afr J Lab Med       Date:  2012-11-07
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  4 in total

1.  Machine learning to support visual auditing of home-based lateral flow immunoassay self-test results for SARS-CoV-2 antibodies.

Authors:  Nathan C K Wong; Sepehr Meshkinfamfard; Valérian Turbé; Matthew Whitaker; Maya Moshe; Alessia Bardanzellu; Tianhong Dai; Eduardo Pignatelli; Wendy Barclay; Ara Darzi; Paul Elliott; Helen Ward; Reiko J Tanaka; Graham S Cooke; Rachel A McKendry; Christina J Atchison; Anil A Bharath
Journal:  Commun Med (Lond)       Date:  2022-07-06

Review 2.  Simplifying the complex: accessible microfluidic solutions for contemporary processes within in vitro diagnostics.

Authors:  Nathan K Khosla; Jake M Lesinski; Monika Colombo; Léonard Bezinge; Andrew J deMello; Daniel A Richards
Journal:  Lab Chip       Date:  2022-09-13       Impact factor: 7.517

3.  Web-Based Risk Prediction Tool for an Individual's Risk of HIV and Sexually Transmitted Infections Using Machine Learning Algorithms: Development and External Validation Study.

Authors:  Xianglong Xu; Zhen Yu; Zongyuan Ge; Eric P F Chow; Yining Bao; Jason J Ong; Wei Li; Jinrong Wu; Christopher K Fairley; Lei Zhang
Journal:  J Med Internet Res       Date:  2022-08-25       Impact factor: 7.076

4.  Machine learning for determining lateral flow device results for testing of SARS-CoV-2 infection in asymptomatic populations.

Authors: 
Journal:  Cell Rep Med       Date:  2022-09-27
  4 in total

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