| Literature DB >> 36232540 |
Giovanni Bisello1, Mariarita Bertoldi1.
Abstract
Aromatic amino acid decarboxylase (AADC) deficiency is a rare monogenic disease due to mutations in the ddc gene producing AADC, a homodimeric pyridoxal 5'-phosphate-dependent enzyme. The disorder is often fatal in the first decade and is characterized by profound motor impairments and developmental delay. In the last two years, there has been a net rise in the number of patients and variants identified, maybe also pushed by the ongoing gene therapy trials. The majority of the identified genotypes are compound heterozygous (about 70%). Efforts are underway to reach early diagnosis, find possible new markers/new fast methods, and predict clinical outcome. However, no clear correlation of genotype-to-phenotype exists to date. Nevertheless, for homozygous patients, reliable results have been obtained using genetic methods combined with available computational tools on crystal structures corroborated by biochemical investigations on recombinant homodimeric AADC variants that have been obtained and characterized in solution. For these variants, the molecular basis for the defect has been suggested and validated, since it correlates quite well with mildness/severity of the homozygous phenotype. Instead, prediction for compound heterozygous patients is more difficult since complementation effects could happen. Here, by analyzing the existing literature on compound heterozygosity in AADC deficiency and other genetic disorders, we highlight that, in order to assess pathogenicity, the measurement of activity of the AADC heterodimeric variant should be integrated by bioinformatic, structural, and functional data on the whole protein constellation theoretically present in such patients. A wider discussion on symptomatic heterozygosity in AADC deficiency is also presented.Entities:
Keywords: aromatic amino acid deficiency; heterodimer; homodimer; interallelic complementation; severity prediction; structure-function relationship
Mesh:
Substances:
Year: 2022 PMID: 36232540 PMCID: PMC9570296 DOI: 10.3390/ijms231911238
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1AADC deficiency variant identification in the last decade. Data are taken from [2,3,14] and from the locus-specific database PNDdb (http://www.biopku.org/pnddb/search-results.asp accessed on 30 August 2022) at the end of December 2021 and of August 2022.
Figure 2Possible combination of alleles in AADC deficiency in homozygosis and in heterozygosis. Representation of possible allele combination in healthy, homozygous and heterozygous conditions is drawn. In blue are the supposed healthy individuals or theoretical healthy carriers; in red, the affected individuals.
Characteristics of the heterodimeric AADC proteins present in four compound heterozygous AADC deficiency patients.
| Heterodimer | Individual Effect on Activity | Interallelic Complementation in Activity | Number of Active Sites Affected | Catalytic Constant | PLP Binding Affinity (nM) d | Clinical Phenotype Output |
|---|---|---|---|---|---|---|
| T69M/S147R a | Mild/severe | negative | 2 | 0.27 (4%) e | 310 | severe |
| M362T/C281W a | Mild/mild | negative | 1 | 1.8 (29%) | 1232 | mild |
| A91V/C410G b | Severe/mild | negative | 2 | 0.38 (6%) | ≈000 | mild |
| R347Q/R358H c | Severe/severe | positive | 1 | 0.45 (7%) | 360 | severe |
a Data were taken from [4]. b Data were taken from [20]. c Data were taken from [19]. d Data for double tagged wild-type (WT) AADC measured under the same experimental conditions were taken from [4] and are k = 6.3 ± 0.1 s−1 and equilibrium PLP binding affinity KD = 80 ± 20 nM. e Percentage with respect to WT AADC. f Fold with respect to WT AADC.
Characteristics of the homodimeric AADC proteins present in four compound heterozygous AADC deficiency patients.
| Homodimer | Expression a | Catalytic Constant | PLP Binding Affinity (nM) b | Homozygous Patient Phenotype |
|---|---|---|---|---|
| T69M | good | 3.5 | 100 | mild |
| S147R | quite good | 0.0090 | 846 c | n.p. |
| M362T | good | 4.6 | 271 | n.p. |
| C281W | poor | n.d. | n.d. | n.p. |
| A91V | quite good | 0.0083 | 782 | n.p. |
| C410G | good | 4.4 | 1070 | n.p. |
| R347Q | good | 0.087 | 54 | severe |
| R358H | good | 0.030 | 1300 | n.p. |
a With respect to the WT AADC. b Data of his-tagged WT AADC measured under the same experimental conditions were taken from [4,14] and are k = 7.6 ± 0.1 s−1 and equilibrium PLP binding affinity KD = 100 ± 10 nM. c [15]. n.d., not determined because of the insolubility of the variant [4] and the poor rescue in the soluble fraction. n.p., not present in homozygosity.
Figure 3Possible effect on the active sites of AADC through combination of amino acid alterations in the heterodimers synthesized by compound heterozygous patients. The protein coordinates are taken from [37]. The two different colors refer to the functional AADC dimer displaying the antisymmetric arrangement. The circles are pointed on the active sites that could be altered or not by the amino acid alterations in the four heterodimers.