| Literature DB >> 36229833 |
Soudeh Ghafouri-Fard1, Tayyebeh Khoshbakht2, Bashdar Mahmud Hussen3,4, Mohammad Taheri5,6, Mohammadreza Hajiesmaeili7.
Abstract
LINC00467 is an example of long intergenic non-coding RNAs whose roles in human disorders are being identified. This gene coding LINC00467 is located on chromosome 1: 211,382,736 - 211,435,570 forward strand. This lncRNA has been firstly recognized through a microarray-based lncRNA profiling as an N-Myc target in neuroblastoma cells. Further studies have shown up-regulation of LINC00467 in different cancer including those originated from brain, gastrointestinal tract, lung and breast. It acts as a molecular sponge for miR-339, miR-138-5p, miR-107, miR-133b, miR-451a, miR-485-5p, miR-7-5p, miR-485-5p, miR-339-3p, miR-200a, miR-1285-3p, miR-299-5p, miR-509-3p, miR-18a-5p, miR-9-5p and miR-20b-5p. LINC00467 can regulate activity of NF-κB, STAT1, Wnt/b-catenin, Akt and ERK1/2 signaling pathways. Accumulating evidence indicates oncogenic role of LINC00467. The current review article aims at providing an overview of LINC00467 in the carcinogenesis.Entities:
Keywords: Biomarker; Cancer; Expression; LINC00467; lncRNA
Year: 2022 PMID: 36229833 PMCID: PMC9563794 DOI: 10.1186/s12935-022-02724-6
Source DB: PubMed Journal: Cancer Cell Int ISSN: 1475-2867 Impact factor: 6.429
Fig. 1LINC00467 has oncogenic roles in several types of cancer, each with its own set of signaling pathways
Function of LINC00467 in cell lines (∆: knock-down or deletion, EMT: epithelial-mesenchymal transition, DDP: cisplatin, 5-Fu: 5-fluor-ouracil)
| Tumor type | Targets/ Regulators and Signaling Pathways | Cell line | Function | Reference |
|---|---|---|---|---|
| Acute myeloid leukemia | miR-339/SKI axis | HS-5, MV-4- 11, NB4, THP1, HL-60, and U937 | ∆ LINC00467: ↓ proliferation, migration, invasion, ↑ apoptosis and cell cycle arrest | [ |
| Bladder cancer | NF-κB signaling pathway | T24 and RT4 | ↑↑ LINC00467: ↑ proliferation and invasion via binding to NF-kb-p65 mRNA to stabilize its expression and binding to NF-kb-p65 to promote its translocation into the nucleus to activate the NF-κB signaling pathway | [ |
| Breast cancer | miR-138-5p and LIN28B | SKBR-3, MCF-7, T47D, MDA-MB-231, and BT-549 | ∆ LINC00467: ↓ proliferation, migration, invasion and EMT process via interacting with miR-138-5p and LIN28B directly | [ |
| MCF-7 and MDA-MB-231 | LINC00467, regulated by Copy Number Amplification and DNA demethylation, is involved in oxidative lipid metabolism and immune infiltration in Breast Cancer. | [ | ||
| Cervical cancer | miR-107/KIF23 axis | HeLa (CL-0101) and SiHa (CL-0210) | ∆ LINC00467: ↓ proliferation, migration, invasion and EMT process | [ |
| Colorectal cancer | NCM460, HT29, SW480, SW620 and HCT116 | ∆ LINC00467: ↓ proliferation, invasion, metastasis and EMT process | [ | |
| miR-133b/FTL axis | SW480, Caco2, SW620, HT29, HCT116 and HIEC | ↑↑ FTL (which regulates via LINC00467): ↑ resistance to 5-FU treatment and metastasis | [ | |
| miR-451a | HCT116, HT29 and SW620 and NCM460 | ∆ LINC00467: ↓ proliferation, ↑ apoptosis | [ | |
| Esophageal carcinoma | miR-485-5p/DPAGT1 axis | KYSE510, TE-5, TE‐7, KYSE‐200 and Het‐1 A | ↑↑ LINC00467: ↑ proliferation, and ↓ apoptosis | [ |
| Gastric cancer | miR-7-5p/EGFR axis | MKN45, HGC-27, NCI-N87, AGS, MKN28 and GES-1 | ∆ LINC00467: ↓ proliferation, migration, invasion | [ |
| ITGB3 | ↑↑ LINC00467: ↑ viability, proliferation and ↓ apoptosis via increasing ITGB3 level | [ | ||
| Glioma | miR-485-5p | NHA, LN299, A172, U87, and U251 | ∆ LINC00467: ↓ proliferation, invasion and ↑ apoptosis | [ |
| miR-339-3p/IP6K2 axis | HEB, LN229, LN308, U87, and U251 | ∆ IP6K2 (which regulates by LINC00467): ↓ proliferation, migration, invasion | [ | |
| DNMT1, p53 | LN229, LN308, U87, LN229 and HEB | ↑↑ LINC00467: ↑ proliferation, invasion and cell cycle progression via inhibition of p53 expression by binding to DNMT1 | [ | |
| miR-200a/E2F3 axis | U87, U251, SHG-44, U-118 MG and HA | ∆ LINC00467: ↓ proliferation, viability, migration, invasion and ↑ apoptosis | [ | |
| miR-339-3p/IP6K2 axis | U87, U251, A172, U373 and NHA | ∆ LINC00467: ↓ proliferation and ↑ apoptosis | [ | |
| Head and neck squamous cell carcinoma | miR-1285-3p/TFAP2A axis | HN4, HN6, SCC-4, SCC-9 and HOK | ∆ LINC00467: ↓ invasion and ↑ apoptosis | [ |
| miR-299-5p/USP48 axis | HN6, SCC25, HN4, Cal27 and SCC4 and HOK | ∆ LINC00467: ↓ cell growth, migration and EMT process | [ | |
| Hepatocellular carcinoma | IGF2BP3 and TRAF5 | THLE-3 and HCCLM3, Hep3B, HepG2 and Huh‐7 | ∆ LINC00467: ↓ proliferation, metastasis, and ↑ apoptosis LINC00467 via binding with IGF2BP3 to increase the mRNA stability of TRAF5 in HCC induces cell proliferation and metastasis. | [ |
| miR-509-3p/PDGFRA axis | L02, MHCC97H, Hep3B, HepG2, Huh7, and HCCLM3 | ∆ LINC00467: ↓ proliferation, invasion, ↑ apoptosis and cellular sensitivity to Axitinib | [ | |
| NR4A3 | QSG-7701 and HCC cell lines HepG2, SK‐HEP‐1 and Huh7 | ↑↑ LINC00467: ↑ proliferation and migration LINC00467 through Dicer-dependent RNA splicing inhibited NR4A3 expression in post‐transcriptional level. | [ | |
| miR-18a-5p/NEDD9 axis | Bel-7402, SMMC‐7721, HepG2, Hep3B, HCCLM3, and LO2 | ∆ LINC00467: ↓ growth, motility and ↑ apoptosis | [ | |
| miR-9-5p/PPARA axis | SMMC-7721 and HepG2 | ↑↑ LINC00467: ↓ viability, proliferation, migration and invasion | [ | |
| Lung adenocarcinoma | miR-20b-5p/CCND1 axis | H1299, H23, A549, HCC827 and IMR90 | ∆ LINC00467: ↓ proliferation and ↑ cell cycle arrest | [ |
| miR-4779 and miR-7978 | SPC-A1, A549, Calu3, and H1299, BEAS‐2B | ∆ LINC00467: ↓ proliferation, stemness and ↑ apoptosis | [ | |
| STAT1, DKK1/Wnt/b-catenin signaling pathway | H1299, Calu, SPC- A1, and A549, BEAS- 2B | ↑↑ LINC00467: ↑ proliferation and migration STAT1 increased LINC00467 expression by acting as a transcription activator. LINC00467 is involved in epigenetically silencing DKK1 to activate Wnt/β-catenin signaling pathway. | [ | |
| EZH2 and HTRA3 | H1299, A549, PC9 and 16HBE | ↑↑ LINC00467: ↑ proliferation, migration and invasion, and ↓ apoptosis Via recruiting EZH2 to the HTRA3 promoter to inhibit its expression | [ | |
| Neuroblastoma | N-Myc, RD3, DKK1 | BE(2)-C and Kelly | ∆ LINC00467: ↓ viability, reduction in RD3 mRNA expression, thus reduces cell survival by inducing DKK1 expression, ↑ apoptosis N-Myc inhibits linc00467 expression by direct binding to its gene promote. | [ |
| Non-small cell lung cancer | Akt signaling pathway | H1299 and A549 | ∆ LINC00467: ↓ cell growth and metastasis via regulating the Akt signaling pathway | [ |
| miR-125a-3p/SIRT6 axis and ERK1/2 signaling pathway | A549 and H1299 | ∆ LINC00467: ↓ malignancy and DDP resistance via inhibiting SIRT6 and inactivating the ERK1/2 signaling pathway | [ | |
| Osteosarcoma | miR-217/KPNA4 axis | Hfob1.19, Saos2, MG63, U2OS and HOS | ∆ LINC00467: ↓ proliferation, migration, invasion and EMT process | [ |
miR-217/HMGA1 axis | HOS, MG63, Saos2 and SJSA1 and Hfob1.19 | ∆ LINC00467: ↓ proliferation, migration, invasion and EMT process and ↑ apoptosis | [ | |
| Prostate cancer | miR-494-3p/STAT3 axis | VCaP, LNCaP, 22RV1, PC3, DU145, HrPEC and RWPE-1 | ∆ LINC00467: ↓ cell growth, cell cycle progression, migration, and invasion and also ↓ cell migration via M2 macrophage polarization | [ |
| Testicular germ cell tumor | NCCIT and Tcam-2 | ∆ LINC00467: ↓ migration, invasion, and clone formation | [ |
Function of LINC00467 in animal models. (∆: knock-down or deletion, NOD-SCID: immunodeficient, AML: Acute myeloid leukemia)
| Tumor type | Animal models | Results | Reference |
|---|---|---|---|
| Acute myeloid leukemia | NOD-SCID mice | ∆ LINC00467: ↓ AML progression in immunodeficient mice | [ |
| Bladder cancer | 5-week-old female nude mice | ∆ LINC00467: ↓ proliferation and tumor formation | [ |
| Breast cancer | 5-week-old female Balb/c nude mice | ∆ LINC00467: ↓ tumor growth and metastasis | [ |
| Cervical cancer | 40 5-week-old male BALB/c nude mice | ∆ LINC00467: ↓ tumor volume and weight | [ |
| Colorectal cancer | 4-week-old male Balb/c nude mice | ∆ FTL (which regulates via LINC00467): ↓ metastasis | [ |
| Esophageal carcinoma | 4–6 week-old female BALB/c nude mice | ∆ LINC00467: ↓ tumor growth, volume, weight and size | [ |
| Glioma | 4-week-old BALB/c-nude mice | ↑↑ IP6K2 (which is regulated by LINC00467): ↑ tumor volume and weight | [ |
| Male athymic BALB/c nude mice | ∆ LINC00467: ↓ tumor volume and weight | [ | |
| Hepatocellular carcinoma | Male BALB/c nude mice | ∆ LINC00467: ↓ tumor growth | [ |
| Lung adenocarcinoma | 6-week-old female nude mice | ∆ LINC00467: ↓ tumor volume and weight | [ |
| Non-small cell lung cancer | 8-week-old male BALB/c nude mice | ∆ LINC00467: ↓ tumor growth | [ |
| Prostate cancer | 6-week-old male BALB/c nude mice | ∆ LINC00467: ↓ tumor growth, volume and weight | [ |
Dysregulation of LINC00467 in clinical samples (ANCTs: adjacent non-cancerous tissues, OS: Overall survival, DFS: disease-free survival, AML: Acute myeloid leukemia, GEPIA: Gene Expression Profiling Interactive Analysis, GEO: Gene Expression Omnibus, RFS: recurrent-free survival)
| Tumor/disease type | Samples | Expression | Kaplan-Meier analysis (impact of LINC00467 up-regulation) | Association of high expression LINC00467 with clinicopathologic characteristics | Association studies | Reference |
|---|---|---|---|---|---|---|
| Acute myeloid leukemia | 34 AML patients and 40 healthy controls | Upregulated | [ | |||
| Bladder cancer | GEO (GSE133624 n = 55) and TANRIC (n = 271) database 6 pairs of tumor tissues and ANCTs | Upregulated | Shorter DFS | [ | ||
| Breast cancer | TCGA datasets: 1,091 tumor tissues and 113 normal tissues 70 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS | Tumor stage and lymph node metastasis | [ | |
GEO database: GSE7904, GSE45827, GSE65194, GSE22820 and GSE38959 | Upregulated | [ | ||||
| Cervical cancer | GEO database: (GSE7803, GSE9750, and GSE63514) 54 pairs of tumor tissues and ANCTs | Upregulated | Tumor size, differentiation, and tumor-node-metastasis stage | [ | ||
| Colorectal cancer | GEO (GSE22598, GSE37364, and GSE50760) and GEPIA databases 45 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS and RFS | [ | ||
| 20 patients and 20 healthy controls | Upregulated in FTL (which regulates via LINC00467) | [ | ||||
31 pairs of tumor tissues and ANCTs | Upregulated | TNM stage and serum CEA level | [ | |||
| Esophageal carcinoma | GEPIA database: 182 tumor tissues and 286 normal tissues 44 pairs of tumor tissues and ANCTs | Upregulated | Tumor size, lymph node metastasis, advanced TNM stage | [ | ||
| Gastric cancer | TCGA data (211 pairs of tumor tissues and ANCTs) | Upregulated | [ | |||
| Glioma | 30 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS | Tumor grade | [ | |
| 30 pairs of tumor tissues and ANCTs | Upregulated in IP6K2 (which regulated by LINC00467) | Shorter OS | Advanced stages and metastatic glioma | [ | ||
| TCGA STAD database (glioma tissues (n = 163) and normal tissues (n = 207)) | Upregulated | [ | ||||
GEPIA database (glioma tissues (n = 163) and normal tissues (n = 207)) 30 pairs of tumor tissues and ANCTs | Upregulated | [ | ||||
| Head and neck squamous cell carcinoma | 35 pairs of tumor tissues and ANCTs | Upregulated | [ | |||
| Hepatocellular carcinoma | GSE6764: 35 tumor tissues and 40 non-cancerous liver tissues 56 pairs of tumor tissues and ANCTs | Upregulated | Tumor size and vascular invasion | [ | ||
GEPIA database: 369 tumor tissues and 160 normal tissues 20 pairs of tumor tissues and ANCTs | Upregulated | [ | ||||
| 65 pairs of tumor tissues and ANCTs | Downregulated | [ | ||||
| Lung adenocarcinoma | 33 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS | [ | ||
38 pairs of tumor tissues and ANCTs | Upregulated | [ | ||||
GEO (GSE19804, GSE19188, GSE30219, GSE27262 data set) and TCGA TANRIC databases 35 pairs of tumor tissues and ANCTs | Upregulated | Larger tumor sizes and later TNM stages | [ | |||
| Non-small cell lung cancer | GEO (GSE33532), GEPIA databases | Upregulated | Shorter OS and DFS | Advanced clinical stages and poor outcome | [ | |
| Osteosarcoma | 36 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS | [ | ||
| 44 pairs of tumor tissues and ANCTs | Upregulated | Shorter OS | Tumor size, TNM stage, Distant metastasis | [ | ||
| Prostate cancer | the GTEx and TCGA databases (49 pairs of tumor tissues) 22 pairs of tumor tissues and ANCTs | Upregulated | [ | |||
| Testicular germ cell tumor | 14 tumor tissues and 9 normal tissues | Upregulated | Shorter OS and DFS | Tumor stage | [ |