Literature DB >> 36227487

Characterizing Properties of Biomolecular Condensates Below the Diffraction Limit In Vivo.

Ganesh Pandey1, Alisha Budhathoki1, Jan-Hendrik Spille2.   

Abstract

Fluorescence microscopy assays enable the investigation of endogenous biomolecular condensates directly in their cellular context. With appropriate experimental designs, these assays yield quantitative information on condensate material properties and inform on biophysical mechanisms of condensate formation. Single-molecule super-resolution and tracking experiments grant access to the smallest condensates and early condensation stages not resolved by conventional imaging approaches. Here, we discuss considerations for using single-molecule assays to extract quantitative information about biomolecular condensates directly in their cellular context.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Liquid-liquid phase separation; Multiphase assembly; Single-molecule tracking; Super-resolution microscopy

Mesh:

Year:  2023        PMID: 36227487     DOI: 10.1007/978-1-0716-2663-4_22

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  70 in total

1.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

2.  A first order phase transition mechanism underlies protein aggregation in mammalian cells.

Authors:  Arjun Narayanan; Anatoli Meriin; J Owen Andrews; Jan-Hendrik Spille; Michael Y Sherman; Ibrahim I Cisse
Journal:  Elife       Date:  2019-02-04       Impact factor: 8.140

3.  A new class of disordered elements controls DNA replication through initiator self-assembly.

Authors:  Matthew W Parker; Maren Bell; Mustafa Mir; Jonchee A Kao; Xavier Darzacq; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2019-09-27       Impact factor: 8.140

Review 4.  A Phase Separation Model for Transcriptional Control.

Authors:  Denes Hnisz; Krishna Shrinivas; Richard A Young; Arup K Chakraborty; Phillip A Sharp
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

5.  Physical principles of intracellular organization via active and passive phase transitions.

Authors:  Joel Berry; Clifford P Brangwynne; Mikko Haataja
Journal:  Rep Prog Phys       Date:  2018-01-09

6.  Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation.

Authors:  David Trombley McSwiggen; Anders S Hansen; Sheila S Teves; Hervé Marie-Nelly; Yvonne Hao; Alec Basil Heckert; Kayla K Umemoto; Claire Dugast-Darzacq; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

7.  Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Authors:  Adam G Larson; Daniel Elnatan; Madeline M Keenen; Michael J Trnka; Jonathan B Johnston; Alma L Burlingame; David A Agard; Sy Redding; Geeta J Narlikar
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

8.  Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.

Authors:  Sinan Kilic; Aleksandra Lezaja; Marco Gatti; Eliana Bianco; Jone Michelena; Ralph Imhof; Matthias Altmeyer
Journal:  EMBO J       Date:  2019-07-01       Impact factor: 11.598

Review 9.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

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