Literature DB >> 36213107

Incorporation of a Chemically Diverse Set of Non-Standard Amino Acids into a Gram-Positive Organism.

Devon A Stork1,2, Michaela A Jones3, Ethan C Garner2, Aditya M Kunjapur3.   

Abstract

The incorporation of non-standard amino acids (nsAAs) within proteins and peptides through genetic code expansion introduces novel chemical functionalities such as photo-crosslinking and bioconjugation. Given the utility of Bacillus subtilis in fundamental and applied science, we extended existing nsAA incorporation technology from Escherichia coli into B. subtilis , demonstrating incorporation of 20 unique nsAAs. The nsAAs we succeeded in incorporating within proteins conferred properties that included fluorescence, photo-crosslinking, and metal chelation. Here, we describe the reagents, equipment, and protocols to test for nsAA incorporation at a small scale (96-well plate and culture tube scales). We report specific media requirements for certain nsAAs, including two variants for different media conditions. Our protocol provides a consistent and reproducible method for incorporation of a chemically diverse set of nsAAs into a model Gram-positive organism.
Copyright © 2022 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Bacillus subtilis ; Genetic code expansion ; Non-standard amino acid ; Noncanonical amino acid ; Synthetic biology ; Translational control ; Unnatural amino acid

Year:  2022        PMID: 36213107      PMCID: PMC9501757          DOI: 10.21769/BioProtoc.4507

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  24 in total

1.  Probing protein-protein interactions with a genetically encoded photo-crosslinking amino acid.

Authors:  Hui-wang Ai; Weijun Shen; Amit Sagi; Peng R Chen; Peter G Schultz
Journal:  Chembiochem       Date:  2011-06-15       Impact factor: 3.164

2.  Genetic Code Expansion, Protein Expression, and Protein Functionalization in Bacillus subtilis.

Authors:  Christopher M Scheidler; Milan Vrabel; Sabine Schneider
Journal:  ACS Synth Biol       Date:  2020-02-18       Impact factor: 5.110

Review 3.  Bacillus subtilis antibiotics: structures, syntheses and specific functions.

Authors:  Torsten Stein
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

4.  Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division.

Authors:  Alexandre W Bisson-Filho; Yen-Pang Hsu; Georgia R Squyres; Erkin Kuru; Fabai Wu; Calum Jukes; Yingjie Sun; Cees Dekker; Seamus Holden; Michael S VanNieuwenhze; Yves V Brun; Ethan C Garner
Journal:  Science       Date:  2017-02-17       Impact factor: 47.728

5.  Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli.

Authors:  Jason W Chin; Stephen W Santoro; Andrew B Martin; David S King; Lei Wang; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

6.  The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.

Authors:  Jianming Xie; Lei Wang; Ning Wu; Ansgar Brock; Glen Spraggon; Peter G Schultz
Journal:  Nat Biotechnol       Date:  2004-09-19       Impact factor: 54.908

7.  Bacillus subtilis spore vaccines displaying protective antigen induce functional antibodies and protective potency.

Authors:  Yeonsu Oh; Jung Ae Kim; Chang-Hwan Kim; Soo-Keun Choi; Jae-Gu Pan
Journal:  BMC Vet Res       Date:  2020-07-28       Impact factor: 2.741

8.  An Evolved Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase/tRNA Pair Is Highly Active and Orthogonal in Mammalian Cells.

Authors:  Václav Beránek; Julian C W Willis; Jason W Chin
Journal:  Biochemistry       Date:  2018-09-27       Impact factor: 3.162

Review 9.  Bacillus subtilis: a universal cell factory for industry, agriculture, biomaterials and medicine.

Authors:  Yuan Su; Chuan Liu; Huan Fang; Dawei Zhang
Journal:  Microb Cell Fact       Date:  2020-09-03       Impact factor: 5.328

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