Literature DB >> 36213009

Evidence of substrate binding and product release via belt-sulfur mobilization of the nitrogenase cofactor.

Chi Chung Lee1, Wonchull Kang1,2, Andrew J Jasniewski1, Martin T Stiebritz1, Kazuki Tanifuji1,3, Markus W Ribbe1,4, Yilin Hu1.   

Abstract

The Mo-nitrogenase catalyses the ambient reduction of N2 to NH3 at the M-cluster, a complex cofactor that comprises two metal-sulphur partial cubanes ligated by an interstitial carbide and three belt-sulphurs. A recent crystallographic study suggests binding of N2 via displacement of the belt-sulphur(s) of the M-cluster upon turnover. However, the direct proof of N2 binding and belt-sulphur mobilization during catalysis remains elusive. Here we show that N2 is captured on the M-cluster via electron- and sulphur-depletion, and that the N2-captured state is catalytically competent in generating NH3. Moreover, we demonstrate that product release only occurs when sulphite is supplied along with a reductant, that sulphite is inserted as sulphide into the belt-sulphur displaced positions, and that there is a dynamic in-and-out of the belt-sulphurs during catalysis. Together, these results establish the mobilization of the cofactor belt-sulphurs as a crucial, yet overlooked, mechanistic element of the nitrogenase reaction.

Entities:  

Year:  2022        PMID: 36213009      PMCID: PMC9540607          DOI: 10.1038/s41929-022-00782-7

Source DB:  PubMed          Journal:  Nat Catal


  38 in total

1.  Structural evidence for a dynamic metallocofactor during N2 reduction by Mo-nitrogenase.

Authors:  Wonchull Kang; Chi Chung Lee; Andrew J Jasniewski; Markus W Ribbe; Yilin Hu
Journal:  Science       Date:  2020-06-19       Impact factor: 47.728

2.  Liquid chromatographic-fluorescence determination of ammonia from nitrogenase reactions: a 2-min assay.

Authors:  J L Corbin
Journal:  Appl Environ Microbiol       Date:  1984-05       Impact factor: 4.792

3.  Extending the carbon chain: hydrocarbon formation catalyzed by vanadium/molybdenum nitrogenases.

Authors:  Yilin Hu; Chi Chung Lee; Markus W Ribbe
Journal:  Science       Date:  2011-08-05       Impact factor: 47.728

Review 4.  Developments in the biomimetic chemistry of cubane-type and higher nuclearity iron-sulfur clusters.

Authors:  Sonny C Lee; Wayne Lo; R H Holm
Journal:  Chem Rev       Date:  2014-01-13       Impact factor: 60.622

5.  Vanadium nitrogenase reduces CO.

Authors:  Chi Chung Lee; Yilin Hu; Markus W Ribbe
Journal:  Science       Date:  2010-08-06       Impact factor: 47.728

6.  A bound reaction intermediate sheds light on the mechanism of nitrogenase.

Authors:  Daniel Sippel; Michael Rohde; Julia Netzer; Christian Trncik; Jakob Gies; Katharina Grunau; Ivana Djurdjevic; Laure Decamps; Susana L A Andrade; Oliver Einsle
Journal:  Science       Date:  2018-03-30       Impact factor: 47.728

7.  Evidence for interstitial carbon in nitrogenase FeMo cofactor.

Authors:  Thomas Spatzal; Müge Aksoyoglu; Limei Zhang; Susana L A Andrade; Erik Schleicher; Stefan Weber; Douglas C Rees; Oliver Einsle
Journal:  Science       Date:  2011-11-18       Impact factor: 47.728

8.  On reversible H2 loss upon N2 binding to FeMo-cofactor of nitrogenase.

Authors:  Zhi-Yong Yang; Nimesh Khadka; Dmitriy Lukoyanov; Brian M Hoffman; Dennis R Dean; Lance C Seefeldt
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

Review 9.  Structural Enzymology of Nitrogenase Enzymes.

Authors:  Oliver Einsle; Douglas C Rees
Journal:  Chem Rev       Date:  2020-06-15       Impact factor: 60.622

10.  Effect of high pN2 and high pD2 on NH3 production, H2 evolution, and HD formation by nitrogenases.

Authors:  B B Jensen; R H Burris
Journal:  Biochemistry       Date:  1985-02-26       Impact factor: 3.162

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  1 in total

Review 1.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

  1 in total

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