| Literature DB >> 36211036 |
Hitler Louis1,2, Destiny E Charlie1,2, Ismail O Amodu1,3, Innocent Benjamin1, Terkumbur E Gber1,2, Ernest C Agwamba1, Adedapo S Adeyinka4.
Abstract
Upon various investigations conducted in search for a nanosensor material with the best sensing performance, the need to explore these materials cannot be overemphasized as materials associated with best sensing attributes are of vast interest to researchers. Hence, there is a need to investigate the adsorption performances of various metal-doped fullerene surfaces: C59Au, C59Hf, C59Hg, C59Ir, C59Os, C59Pt, C59Re, and C59W on thiourea [SC(NH2)2] molecule using first-principles density functional theory computation. Comparative adsorption study has been carried out on various adsorption models of four functionals, M06-2X, M062X-D3, PBE0-D3, and ωB97XD, and two double-hybrid (DH) functionals, DSDPBEP86 and PBE0DH, as reference at Gen/def2svp/LanL2DZ. The visual study of weak interactions such as quantum theory of atoms in molecule analysis and noncovalent interaction analysis has been invoked to ascertain these results, and hence we arrived at a conclusive scientific report. In all cases, the weak adsorption observed is best described as physisorption phenomena, and CH4N2S@C59Pt complex exhibits better sensing attributes than its studied counterparts in the interactions between thiourea molecule and transition metal-doped fullerene surfaces. Also, in the comparative adsorption study, DH density functionals show better performance in estimating the adsorption energies due to their reduced mean absolute deviation (MAD) and root-mean-square deviation (RMSD) values of (MAD = 1.0305, RMSD = 1.6277) and (MAD = 0.9965, RMSD = 1.6101) in DSDPBEP86 and PBE0DH, respectively.Entities:
Year: 2022 PMID: 36211036 PMCID: PMC9535727 DOI: 10.1021/acsomega.2c04044
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1Optimized structures of the thiourea molecule and the pure fullerene surface, along with their bond lengths.
Figure 2Optimized structures of the thiourea molecule and the pure fullerene surface, along with their bond lengths.
Calculated Bond Lengths for the Studied Complexes at the DFT/B3LYP-D3BJ/Gen/def2svp/LanL2DZ Level of Theory Before and After the Adsorptions
| Bond length
(Å) | |||
|---|---|---|---|
| system | bond label | before ads. | After ads. |
| C48–S68 | 5.260 | ||
| C49–C50 | 1.453 | 1.453 | |
| Au60–S68 | 2.516 | ||
| Au60–C27 | 2.028 | 2.056 | |
| Au60–C34 | 2.028 | 2.017 | |
| Au60–C35 | 2.086 | 2.174 | |
| C49–C50 | 1.452 | 1.449 | |
| Hf60–S68 | 2.707 | ||
| Hf60–C27 | 2.113 | 2.139 | |
| Hf60–C34 | 2.113 | 2.153 | |
| Hf60–C35 | 2.022 | 2.051 | |
| C49–C50 | 1.445 | 1.444 | |
| Hg60–S68 | 2.602 | ||
| Hg60–C27 | 2.292 | 2.894 | |
| Hg60–C34 | 2.292 | 2.194 | |
| Hg60–C35 | 2.299 | 2.699 | |
| C49–C50 | 1.440 | 1.430 | |
| Ir60–S62 | 2.523 | ||
| Ir60–C27 | 1.947 | 1.948 | |
| Ir60–C34 | 1.947 | 1.980 | |
| Ir60–C35 | 1.900 | 1.920 | |
| C49–C50 | 1.443 | 1.443 | |
| Os60–S68 | 2.501 | ||
| Os60–C27 | 1.947 | 1.960 | |
| Os60–C34 | 1.947 | 1.957 | |
| Os60–C35 | 1.866 | 1.877 | |
| C49–C50 | 1.446 | 1.448 | |
| Pt60–S68 | 2.112 | ||
| Pt60–C27 | 1.973 | 2.061 | |
| Pt60–C34 | 1.973 | 2.059 | |
| Pt60–C35 | 1.926 | 1.887 | |
| C49–C50 | 1.443 | 1.444 | |
| Re60–S68 | 2.519 | ||
| Re60–C27 | 1.983 | 1.982 | |
| Re60–C34 | 1.983 | 2.091 | |
| Re60–C35 | 1.885 | 1.899 | |
| C49–C50 | 1.450 | 1.447 | |
| W60–S62 | 2.442 | ||
| W60–N63 | 2.403 | ||
| W60–C27 | 2.009 | 2.048 | |
| W60–C34 | 2.009 | 2.077 | |
| W60–C35 | 1.920 | 1.950 | |
| C49–C50 | 1.456 | 1.447 | |
Figure 3Optimized structures of the pure fullerene before and after the interaction.
Figure 4Optimized structures of the complexes obtained after interaction with the thiourea gas molecule and the metal-doped fullerene surface.
| (a) calculated values
of adsorption energy ( | |||||||
|---|---|---|---|---|---|---|---|
| system | adsorption
energy ( | work function (Φ) | Fermi level
( | energy gap
( | |||
| 6.3129 | –4.33165 | 4.33165 | 0.1115 | 0.5399 | 2.5155 | 3.4605 | |
| 5.8390 | –4.3055 | 4.3055 | 0.5399 | 0.4070 | 2.7069 | 3.7446 | |
| 4.4142 | –4.1802 | 4.1802 | 0.7809 | 0.2838 | 2.6018 | 3.6414 | |
| 6.3797 | –4.0386 | 4.0386 | –0.5605 | 0.9119 | 2.5228 | 3.0692 | |
| 6.0995 | –4.50025 | 4.50025 | –0.5776 | 0.9737 | 2.5005 | 3.9729 | |
| 10.6648 | –4.9668 | 4.9668 | –0.5039 | 1.2082 | 2.1123 | 1.8996 | |
| 5.9764 | –4.44175 | 4.44175 | –0.5173 | 1.0944 | 2.5192 | 3.9489 | |
| 5.1155 | –5.06435 | 5.06435 | –0.2121 | 1.1712 | 2.4419 | 3.8629 | |
Previously reported physisorption phenomena.
Energy of HOMO (EHOMO), Energy of LUMO (ELUMO), EA, IP, Electrophilicity Index (ω), Chemical Potential (μ), Chemical Softness (σ), and Chemical Hardness (η)a
| system | band gap | IP | EA | σ | η | μ | ω | ||
|---|---|---|---|---|---|---|---|---|---|
| C59Au | –6.4001 | –3.1669 | 3.2333 | 6.4001 | 3.1669 | 0.3093 | 1.6166 | –4.7835 | 7.0770 |
| C59Hf | –6.4543 | –2.6844 | 3.7699 | 6.4543 | 2.6844 | 0.2653 | 1.8849 | –4.5693 | 5.5384 |
| C59Hg | –6.6246 | –3.7742 | 2.8504 | 6.6246 | 3.7742 | 0.3508 | 1.4252 | –5.1994 | 9.4843 |
| C59Ir | –6.1637 | –2.9176 | 3.2461 | 6.1637 | 2.9176 | 0.3081 | 1.6230 | –4.5406 | 6.3515 |
| C59Os | –6.9335 | –3.0695 | 3.8640 | 6.9335 | 3.0695 | 0.2588 | 1.9320 | –5.0015 | 6.4737 |
| C59Pt | –6.4415 | –3.0695 | 3.3720 | 6.4415 | 3.0695 | 0.2966 | 1.6860 | –4.7555 | 6.7065 |
| C59Re | –6.8336 | –2.9489 | 3.8847 | 6.8336 | 2.9489 | 0.2574 | 1.9424 | –4.8913 | 6.1586 |
| C59W | –6.3498 | –3.0466 | 3.3032 | 6.3498 | 3.0466 | 0.3027 | 1.6516 | –4.6982 | 6.6823 |
| –6.0619 | –2.6014 | 3.4605 | 6.0619 | 2.6014 | 0.2890 | 1.7303 | –4.3317 | 5.4221 | |
| –6.1778 | –2.4332 | 3.7446 | 6.1778 | 2.4332 | 0.2671 | 1.8723 | –4.3055 | 4.9504 | |
| –6.0009 | –2.3595 | 3.6414 | 6.0009 | 2.3595 | 0.2746 | 1.8207 | –4.1802 | 4.7987 | |
| –5.5732 | –2.504 | 3.0692 | 5.5732 | 2.5040 | 0.3258 | 1.5346 | –4.0386 | 5.3142 | |
| –6.4867 | –2.5138 | 3.9729 | 6.4867 | 2.5138 | 0.2517 | 1.9865 | –4.5003 | 5.0976 | |
| –5.9166 | –4.0170 | 1.8996 | 5.9166 | 4.0170 | 0.5264 | 0.9498 | –4.9668 | 12.9865 | |
| –6.4162 | –2.4673 | 3.9489 | 6.4162 | 2.4673 | 0.2532 | 1.9745 | –4.4418 | 4.9961 | |
| –6.9958 | –3.1329 | 3.8629 | 6.9s958 | 3.1329 | 0.2589 | 1.9315 | –5.0644 | 6.6395 |
All units in electron Volt (eV).
Figure 5HOMO–LUMO plots for A1, H1, H2, I1, O1, P1, R1, and W1 complexes with their corresponding energy gap (Eg) values.
NBO Table Showing the Donor to Acceptor Contribution, Stabilization Energies, and Other NBO Parameters in Gas and Solvents
| compounds | donor ( | acceptor
( | F( | ||
|---|---|---|---|---|---|
| C59Au | π*C23–C24 | π*C21–C22 | 223.93 | 0.02 | 0.101 |
| C59Hf | π*C34–C49 | LP*Hf60 | 344.88 | 0.02 | 0.120 |
| C59Hg | LP*C35 | LP*Hg60 | 409.58 | 0.46 | 0.589 |
| C59Ir | σ C27–Ir60 | σ C35–Ir60 | 972.93 | 0.27 | 1.341 |
| C59Os | π*C27–Os60 | π*C28–C29 | 417.14 | 0.01 | 0.089 |
| C59Pt | σ C34–Pt60 | LP*C35 | 972.02 | 0.69 | 0.866 |
| C59Re | σ*C35–Re60 | LP*Re60 | 814.61 | 0.37 | 1.727 |
| C59W | σ*C34–W60 | σ*C35–W60 | 997.45 | 0.04 | 0.396 |
| TOU@C59Au | σ N62–H63 | π*C61–N62 | 196.68 | 0.96 | 0.587 |
| TOU@C59Hf | σ C34–Hf60 | σ C27–Hf60 | 691.11 | 0.03 | 0.347 |
| TOU@C59Hg | π*C28–C29 | π*C30–C31 | 280.31 | 0.01 | 0.084 |
| TOU@C59Ir | π*C32–C33 | π*C34–C49 | 114.41 | 0.01 | 0.085 |
| TOU@C59Os | π*C35–Os60 | σ Os60–S68 | 200.47 | 0.17 | 0.400 |
| TOU@C59Pt | LP Pt60 | LP* S62 | 572.76 | 0.17 | 0.321 |
| TOU@C59Re | σ C61–N62 | BD*(3)C61–S68 | 156.16 | 1.43 | 0.618 |
| TOU@C59W | π*C35–W60 | π*C36–C48 | 257.07 | 0.01 | 0.083 |
| TOU@C59Au | π*C46–C47 | π*C41–C42 | 250.01 | 0.01 | 0.081 |
QTAIM Table Showing Calculated Topological Parameters
| compd | bond | CP | ρ( | ∇2ρ( | ELF | ε | λ1 | λ2 | λ3 | λ1/λ3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C46–S68 | 138 | 0.986 | 0.272 | 0.575 | –0.470 | 0.105 | –1.223 | 0.488 | 0.546 | 0.340 | –0.192 | –0.488 | –0.696 | |
| Au60–S68 | 110 | 0.592 | 0.116 | 0.400 | –0.513 | –0.114 | –0.778 | 0.293 | 0.210 | 0.217 | –0.553 | –0.457 | –0.475 | |
| N65–C26 | 175 | 0.299 | –0.140 | 0.349 | –0.421 | –0.386 | –0.830 | 0.992 | 0.024 | –0.126 | 0.109 | –0.123 | 1.024 | |
| N65–C35 | 141 | 0.271 | –0.637 | 0.890 | –0.337 | –0.248 | –2.639 | 0.931 | 0.144 | 0.318 | –0.501 | –0.445 | –0.714 | |
| Hf60–S68 | 109 | 0.395 | 0.113 | 0.274 | –0.291 | –0.170 | –0.942 | 0.178 | 0.170 | 0.183 | –0.374 | –0.319 | –0.571 | |
| N63–C35 | 141 | 0.594 | 0.205 | 0.389 | –0.267 | 0.122 | –1.459 | 0.200 | 1.502 | –0.947 | 0.238 | –0.237 | 3.998 | |
| N63–C25 | 175 | 0.939 | 0.385 | 0.734 | –0.506 | 0.228 | –1.450 | 0.260 | 0.654 | 0.489 | –0.393 | –0.650 | –0.752 | |
| Hg60–S68 | 136 | 0.570 | 0.976 | 0.345 | –0.447 | –0.102 | –0.772 | 0.330 | 0.078 | 0.188 | –0.467 | –0.433 | –0.433 | |
| Hg60–C35 | 133 | 0.330 | 0.855 | 0.238 | –0.263 | –0.245 | –0.907 | 0.143 | 0.278 | 0.131 | –0.256 | –0.200 | –0.654 | |
| H64–C25 | 163 | 0.151 | 0.523 | 0.116 | –0.102 | 0.144 | –1.141 | 0.489 | 2.092 | 0.748 | –0.548 | –0.169 | –4.413 | |
| Ir60–S62 | 110 | 0.630 | 0.133 | 0.459 | –0.591 | –0.132 | –0.776 | 0.279 | 0.259 | 0.231 | –0.542 | –0.431 | –0.535 | |
| H64–C35 | 153 | 0.176 | 0.508 | 0.125 | –0.123 | 0.217 | –1.017 | 0.691 | 0.222 | 0.876 | –0.166 | –0.202 | –4.329 | |
| Os60–S68 | 111 | 0.673 | 0.121 | 0.445 | –0.599 | –0.153 | –0.744 | 0.338 | 0.091 | 0.244 | –0.588 | –0.642 | –0.381 | |
| H67–C35 | 152 | 0.137 | 0.396 | 0.881 | –0.772 | 0.11 0 | –1.142 | 0.605 | 1.059 | 0.603 | –0.675 | –0.139 | –4.336 | |
| Pt60–S62 | 121 | 0.113 | 0.261 | 0.107 | –0.151 | –0.441 | –0.708 | 0.330 | 0.096 | 0.511 | –0.117 | 10.131 | 0.051 | |
| Re60–S68 | 107 | 0.628 | 0.123 | 0.406 | –0.525 | –0.118 | –0.775 | 0.325 | 0.166 | 0.241 | –0.637 | –0.546 | –0.441 | |
| H66–C35 | 149 | 0.149 | 0.439 | 0.101 | –0.925 | 0.860 | –0.109 | 0.619 | 0.291 | 0.728 | –0.126 | –0.163 | –4.464 | |
| W60–H64 | 124 | 0.265 | 0.184 | 0.124 | –0.128 | –0.489 | –0.963 | 0.366 | 0.786 | 0.236 | –0.185 | –0.331 | –0.714 | |
| C61–C34 | 144 | 0.166 | 0.447 | 0.100 | –0.908 | 0.924 | –0.110 | 0.865 | 0.114 | 0.655 | –0.110 | –0.983 | –0.666 |
Adsorption Energies for Various Complexes in the Six Different Models Grouped Into Standard and Training Datasets
| standard
dataset | training dataset | |||||
|---|---|---|---|---|---|---|
| system | Dsdpbep86 | Pbe0dh | M062X | M062XD3 | Pbe0D3 | ωB97XD |
| 6.2044 | 4.5203 | 6.3129 | 6.2078 | 6.0560 | 5.5239 | |
| 5.7779 | 4.3061 | 5.8390 | 5.8748 | 4.4899 | 5.7167 | |
| 4.8542 | 2.8675 | 4.4142 | 4.5004 | –1.3966 | 4.3786 | |
| 6.2170 | 4.5558 | 6.3797 | 6.4289 | 6.1812 | 6.0662 | |
| 5.9189 | 4.3126 | 6.0995 | 6.1465 | 5.9860 | 5.8342 | |
| 10.4483 | 8.5665 | 10.6648 | 10.6837 | 9.4633 | 10.0816 | |
| 6.0813 | 4.2106 | 5.9764 | 5.8845 | 5.9235 | 5.7268 | |
| 5.1087 | 3.3040 | 5.1155 | 5.0278 | 4.6743 | 4.6657 | |
Figure 6NCI visualization using color-filled isosurface graphs was generated from the grid points using VMD software.
Figure 7DOS plots for the studied complexes showing the energy gaps and trends of electron delocalization in various complexes.
Calculated MAD and RMSD for the Six Adsorption Models
| Dsdpbep86 | Pbe0dh | M06-2X | M062Xd3 | Pbe0d3 | ωb97Xd | |
|---|---|---|---|---|---|---|
| 1.0305 | 0.9965 | 1.0860 | 1.1060 | 1.9373 | 1.0373 | |
| 1.6277 | 1.6101 | 1.7448 | 1.7486 | 2.8571 | 1.6387 |
Calculated MAE for the Training Dataset Using PBE0DH as the Standard
| MAEDsdpbep86-M062X | MAEDsdpbep86-M062Xd3 | MAEDsdpbep86-Pbe0d3 | MAEDsdpbep86-ωb97Xd |
|---|---|---|---|
| 0.1602 | 0.3202 | 1.1701 | 0.4320 |
Figure 8Chart showing the six adsorption models with their statistical values such as MAD and RMSD.
Calculated MAE for the Training Dataset Using PBE0DH as the Standard
| MAEPBE0dh-M062X | MAEPBE0dh-M062Xd3 | MAEPBE0dh-Pbe0d3 | MAEPBE0dh-ωb97Xd |
|---|---|---|---|
| 0.1602 | 0.3202 | 1.1701 | 0.4320 |