Literature DB >> 36209298

Dongia deserti sp. nov., Isolated from the Gurbantunggut Desert Soil.

Chun-Yan Lu1, Lei Dong1, Dong Wang2, Shuai Li1, Bao-Zhu Fang3, Ming-Xian Han4, Feng Liu2, Hong-Chen Jiang4, Iftikhar Ahmed5, Wen-Jun Li6,7.   

Abstract

A Gram-stain-negative, aerobic, short rod-shaped strain, designated as SYSU D60009T, was isolated from a dry sandy soil sample collected from the Gurbantunggut Desert in Xinjiang, northwest China. Strain SYSU D60009T was observed to grow at 15-42 °C (optimum at 37 °C), pH 4.0-10.0 (optimum at 7.0), and with 0-0.5% (w/v) NaCl (optimum, 0%). The strain grew well on R2A agar, and colonies were smooth, white-pigmented, and circular with low convexity. The polar lipids consisted of phosphatidylethanolamine, aminolipid, aminophospholipid, and unknown lipids. The major cellular fatty acid (> 10%) was C16:0 and the predominant respiratory quinone was Q-10. Whole genome sequencing of strain SYSU D60009T revealed 6,132,710 bp with a DNA G + C content of 63.6%. The ANI and dDDH values of strains SYSU D60009T to Dongia mobilis CGMCC 1.7660 T were 72.8% and 19.0%, respectively. Based on the phenotypic, phylogenetic, and chemotaxonomic properties, strain SYSU D60009T represents a novel species of the genus Dongia, for which the name Dongia deserti sp. nov. is proposed, the type strain is SYSU D60009T (= CGMCC 1.16441 T = KCTC 52790 T).
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

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Year:  2022        PMID: 36209298     DOI: 10.1007/s00284-022-03051-9

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.343


  37 in total

1.  Dongia soli sp. nov., isolated from soil from Dokdo, Korea.

Authors:  Dong-Uk Kim; Hyosun Lee; Hyun Kim; Song-Gun Kim; Jong-Ok Ka
Journal:  Antonie Van Leeuwenhoek       Date:  2016-07-19       Impact factor: 2.271

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

4.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  Shewanella nanhaiensis sp. nov., a marine bacterium isolated from sediment of South China Sea, and emended descriptions of Shewanella woodyi, Shewanella hanedai and Shewanella canadensis.

Authors:  Wen-Rui Cao; Xue Li; Yuan-Yuan Sun; Ming-Yu Jiang; Xiao-Dong Xu; Ying-Jie Li
Journal:  Int J Syst Evol Microbiol       Date:  2021-12       Impact factor: 2.747

7.  Dongia rigui sp. nov., isolated from freshwater of a large wetland in Korea.

Authors:  Keun Sik Baik; Yeoung Min Hwang; Jong-Soon Choi; Joseph Kwon; Chi Nam Seong
Journal:  Antonie Van Leeuwenhoek       Date:  2013-09-18       Impact factor: 2.271

8.  Dongia mobilis gen. nov., sp. nov., a new member of the family Rhodospirillaceae isolated from a sequencing batch reactor for treatment of malachite green effluent.

Authors:  Ying Liu; Jing-Hua Jin; Ying-Hao Liu; Yu-Guang Zhou; Zhi-Pei Liu
Journal:  Int J Syst Evol Microbiol       Date:  2010-01-08       Impact factor: 2.747

9.  Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia.

Authors:  Wen-Jun Li; Ping Xu; Peter Schumann; Yu-Qin Zhang; Rüdiger Pukall; Li-Hua Xu; Erko Stackebrandt; Cheng-Lin Jiang
Journal:  Int J Syst Evol Microbiol       Date:  2007-07       Impact factor: 2.747

10.  Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Soonjae Kwon; Jeongmin Lim; Yeseul Kim; Hyungseok Seo; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2017-05-30       Impact factor: 2.747

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