Literature DB >> 36203023

Regulatory non-coding RNAs: everything is possible, but what is important?

Jimmy K Guo1,2, Mitchell Guttman3.   

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Year:  2022        PMID: 36203023     DOI: 10.1038/s41592-022-01629-6

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


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  47 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  Destabilization of B2 RNA by EZH2 Activates the Stress Response.

Authors:  Athanasios Zovoilis; Catherine Cifuentes-Rojas; Hsueh-Ping Chu; Alfredo J Hernandez; Jeannie T Lee
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

3.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

4.  RNA promotes the formation of spatial compartments in the nucleus.

Authors:  Sofia A Quinodoz; Joanna W Jachowicz; Prashant Bhat; Noah Ollikainen; Abhik K Banerjee; Isabel N Goronzy; Mario R Blanco; Peter Chovanec; Amy Chow; Yolanda Markaki; Jasmine Thai; Kathrin Plath; Mitchell Guttman
Journal:  Cell       Date:  2021-11-04       Impact factor: 66.850

5.  HiChIRP reveals RNA-associated chromosome conformation.

Authors:  Maxwell R Mumbach; Jeffrey M Granja; William J Greenleaf; Howard Y Chang; Ryan A Flynn; Caitlin M Roake; Ansuman T Satpathy; Adam J Rubin; Yanyan Qi; Zhaozhao Jiang; Shadi Shams; Bryan H Louie; Jimmy K Guo; David G Gennert; M Ryan Corces; Paul A Khavari; Maninjay K Atianand; Steven E Artandi; Katherine A Fitzgerald
Journal:  Nat Methods       Date:  2019-05-27       Impact factor: 28.547

6.  GENCODE 2021.

Authors:  Adam Frankish; Mark Diekhans; Irwin Jungreis; Julien Lagarde; Jane E Loveland; Jonathan M Mudge; Cristina Sisu; James C Wright; Joel Armstrong; If Barnes; Andrew Berry; Alexandra Bignell; Carles Boix; Silvia Carbonell Sala; Fiona Cunningham; Tomás Di Domenico; Sarah Donaldson; Ian T Fiddes; Carlos García Girón; Jose Manuel Gonzalez; Tiago Grego; Matthew Hardy; Thibaut Hourlier; Kevin L Howe; Toby Hunt; Osagie G Izuogu; Rory Johnson; Fergal J Martin; Laura Martínez; Shamika Mohanan; Paul Muir; Fabio C P Navarro; Anne Parker; Baikang Pei; Fernando Pozo; Ferriol Calvet Riera; Magali Ruffier; Bianca M Schmitt; Eloise Stapleton; Marie-Marthe Suner; Irina Sycheva; Barbara Uszczynska-Ratajczak; Maxim Y Wolf; Jinuri Xu; Yucheng T Yang; Andrew Yates; Daniel Zerbino; Yan Zhang; Jyoti S Choudhary; Mark Gerstein; Roderic Guigó; Tim J P Hubbard; Manolis Kellis; Benedict Paten; Michael L Tress; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

7.  Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF.

Authors:  Anders S Hansen; Tsung-Han S Hsieh; Claudia Cattoglio; Iryna Pustova; Ricardo Saldaña-Meyer; Danny Reinberg; Xavier Darzacq; Robert Tjian
Journal:  Mol Cell       Date:  2019-09-12       Impact factor: 17.970

8.  RNA Interactions Are Essential for CTCF-Mediated Genome Organization.

Authors:  Ricardo Saldaña-Meyer; Javier Rodriguez-Hernaez; Thelma Escobar; Mayilaadumveettil Nishana; Karina Jácome-López; Elphege P Nora; Benoit G Bruneau; Aristotelis Tsirigos; Mayra Furlan-Magaril; Jane Skok; Danny Reinberg
Journal:  Mol Cell       Date:  2019-09-12       Impact factor: 17.970

9.  Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin.

Authors:  Syuzo Kaneko; Roberto Bonasio; Ricardo Saldaña-Meyer; Takahaki Yoshida; Jinsook Son; Koichiro Nishino; Akihiro Umezawa; Danny Reinberg
Journal:  Mol Cell       Date:  2013-12-26       Impact factor: 17.970

10.  DNMT1-interacting RNAs block gene-specific DNA methylation.

Authors:  Annalisa Di Ruscio; Alexander K Ebralidze; Touati Benoukraf; Giovanni Amabile; Loyal A Goff; Jolyon Terragni; Maria Eugenia Figueroa; Lorena Lobo De Figueiredo Pontes; Meritxell Alberich-Jorda; Pu Zhang; Mengchu Wu; Francesco D'Alò; Ari Melnick; Giuseppe Leone; Konstantin K Ebralidze; Sriharsa Pradhan; John L Rinn; Daniel G Tenen
Journal:  Nature       Date:  2013-10-09       Impact factor: 49.962

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