Literature DB >> 36191223

Replication stalling activates SSB for recruitment of DNA damage tolerance factors.

Elizabeth S Thrall1, Sadie C Piatt1, Seungwoo Chang1, Joseph J Loparo1.   

Abstract

Translesion synthesis (TLS) polymerases bypass DNA lesions that block replicative polymerases, allowing cells to tolerate DNA damage encountered during replication. It is well known that most bacterial TLS polymerases must interact with the sliding-clamp processivity factor to carry out TLS, but recent work in Escherichia coli has revealed that single-stranded DNA-binding protein (SSB) plays a key role in enriching the TLS polymerase Pol IV at stalled replication forks in the presence of DNA damage. It remains unclear how this interaction with SSB enriches Pol IV in a stalling-dependent manner given that SSB is always present at the replication fork. In this study, we use single-molecule imaging in live E. coli cells to investigate this SSB-dependent enrichment of Pol IV. We find that Pol IV is enriched through its interaction with SSB in response to a range of different replication stresses and that changes in SSB dynamics at stalled forks may explain this conditional Pol IV enrichment. Finally, we show that other SSB-interacting proteins are likewise selectively enriched in response to replication perturbations, suggesting that this mechanism is likely a general one for enrichment of repair factors near stalled replication forks.

Entities:  

Keywords:  DNA damage response; DNA replication; single-molecule imaging; superresolution microscopy; translesion synthesis

Mesh:

Substances:

Year:  2022        PMID: 36191223      PMCID: PMC9565051          DOI: 10.1073/pnas.2208875119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  82 in total

1.  A replicase clamp-binding dynamin-like protein promotes colocalization of nascent DNA strands and equipartitioning of chromosomes in E. coli.

Authors:  Shogo Ozaki; Yusaku Matsuda; Kenji Keyamura; Hironori Kawakami; Yasunori Noguchi; Kazutoshi Kasho; Komomo Nagata; Tamami Masuda; Yukari Sakiyama; Tsutomu Katayama
Journal:  Cell Rep       Date:  2013-08-30       Impact factor: 9.423

2.  Highly inclined thin illumination enables clear single-molecule imaging in cells.

Authors:  Makio Tokunaga; Naoko Imamoto; Kumiko Sakata-Sogawa
Journal:  Nat Methods       Date:  2008-01-06       Impact factor: 28.547

3.  UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB.

Authors:  Veronica G Godoy; Daniel F Jarosz; Sharotka M Simon; Alexej Abyzov; Valentin Ilyin; Graham C Walker
Journal:  Mol Cell       Date:  2007-12-28       Impact factor: 17.970

4.  Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.

Authors:  Han N Ho; Daniel Zalami; Jürgen Köhler; Antoine M van Oijen; Harshad Ghodke
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

Review 5.  Translesion DNA polymerases.

Authors:  Myron F Goodman; Roger Woodgate
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-10-01       Impact factor: 10.005

Review 6.  Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities.

Authors:  T M Lohman; M E Ferrari
Journal:  Annu Rev Biochem       Date:  1994       Impact factor: 23.643

7.  Dynamics of leading-strand lesion skipping by the replisome.

Authors:  Joseph T P Yeeles; Kenneth J Marians
Journal:  Mol Cell       Date:  2013-11-21       Impact factor: 17.970

8.  Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells.

Authors:  M Charl Moolman; Sriram Tiruvadi Krishnan; Jacob W J Kerssemakers; Aafke van den Berg; Pawel Tulinski; Martin Depken; Rodrigo Reyes-Lamothe; David J Sherratt; Nynke H Dekker
Journal:  Nat Commun       Date:  2014-12-18       Impact factor: 14.919

9.  Single-molecule imaging reveals multiple pathways for the recruitment of translesion polymerases after DNA damage.

Authors:  Elizabeth S Thrall; James E Kath; Seungwoo Chang; Joseph J Loparo
Journal:  Nat Commun       Date:  2017-12-18       Impact factor: 14.919

10.  Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.

Authors:  J Christof M Gebhardt; David M Suter; Rahul Roy; Ziqing W Zhao; Alec R Chapman; Srinjan Basu; Tom Maniatis; X Sunney Xie
Journal:  Nat Methods       Date:  2013-03-24       Impact factor: 28.547

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  1 in total

1.  Replication stalling activates SSB for recruitment of DNA damage tolerance factors.

Authors:  Elizabeth S Thrall; Sadie C Piatt; Seungwoo Chang; Joseph J Loparo
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

  1 in total

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