Literature DB >> 36190248

Basaltic Lava Tube Hosts a Putative Novel Genus in the Family Solirubrobacteraceae.

C B Fishman1, J G Bevilacqua1, O Gadson1, A S Hahn2, A C McAdam3, J Bleacher4, S S Johnson5.   

Abstract

We report the draft genome sequence of a putative new genus and species, Siliceabacter maunaloa, in the family Solirubrobacteraceae. The members of this family of Actinobacteria are generally Gram positive and mesophilic. Found within a Hawaiian lava tube, this microbe illuminates the types of prokaryotes inhabiting secondary minerals in subsurface basaltic environments.

Entities:  

Year:  2022        PMID： 36190248      PMCID： PMC9583782          DOI： 10.1128/mra.00499-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  33 in total

1.  The MetaCyc Database.

Authors:  Peter D Karp; Monica Riley; Suzanne M Paley; Alida Pellegrini-Toole
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication.

Authors:  Matthew R Olm; Christopher T Brown; Brandon Brooks; Jillian F Banfield
Journal:  ISME J       Date:  2017-07-25       Impact factor: 10.302

3.  Structural basis of a Ni acquisition cycle for [NiFe] hydrogenase by Ni-metallochaperone HypA and its enhancer.

Authors:  Satoshi Watanabe; Takumi Kawashima; Yuichi Nishitani; Tamotsu Kanai; Takehiko Wada; Kenji Inaba; Haruyuki Atomi; Tadayuki Imanaka; Kunio Miki
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

4.  tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Methods Mol Biol       Date:  2019

5.  Physiological and metabolic effects of carbon monoxide oxidation in the model marine bacterioplankton Ruegeria pomeroyi DSS-3.

Authors:  Michael Cunliffe
Journal:  Appl Environ Microbiol       Date:  2012-11-09       Impact factor: 4.792

6.  metaSPAdes: a new versatile metagenomic assembler.

Authors:  Sergey Nurk; Dmitry Meleshko; Anton Korobeynikov; Pavel A Pevzner
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

7.  ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.

Authors:  Silas Kieser; Joseph Brown; Evgeny M Zdobnov; Mirko Trajkovski; Lee Ann McCue
Journal:  BMC Bioinformatics       Date:  2020-06-22       Impact factor: 3.169

8.  UniProt: a worldwide hub of protein knowledge.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

9.  MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.

Authors:  Dongwan D Kang; Feng Li; Edward Kirton; Ashleigh Thomas; Rob Egan; Hong An; Zhong Wang
Journal:  PeerJ       Date:  2019-07-26       Impact factor: 2.984

10.  The MetaCyc database of metabolic pathways and enzymes - a 2019 update.

Authors:  Ron Caspi; Richard Billington; Ingrid M Keseler; Anamika Kothari; Markus Krummenacker; Peter E Midford; Wai Kit Ong; Suzanne Paley; Pallavi Subhraveti; Peter D Karp
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971
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