Literature DB >> 36190232

Complete Genome Sequence of Lactiplantibacillus plantarum Strain VHProbi V38, Isolated from Kimchi Soup.

Hongchang Cui1, Jingyan Zhang1, Zhi Duan1.   

Abstract

Lactiplantibacillus plantarum strain VHProbi V38 is a traditional lactic acid bacterial probiotic that has been commercialized for several years. Here, we report the whole-genome sequence of this strain. Sequencing yielded a 3,197,704-bp genome and 3,050 protein-coding genes.

Entities:  

Year:  2022        PMID： 36190232      PMCID： PMC9584344          DOI： 10.1128/mra.00493-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  7 in total

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Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Mar-Apr       Impact factor: 4.579

2.  Isolation and identification of lactic acid bacteria from Tarag in Eastern Inner Mongolia of China by 16S rRNA sequences and DGGE analysis.

Authors:  Wenjun Liu; Qiuhua Bao; Manjun Qing; Xia Chen; Ting Sun; Meihua Li; Jiachao Zhang; Jie Yu; Menghe Bilige; Tiansong Sun; Heping Zhang
Journal:  Microbiol Res       Date:  2012-01-20       Impact factor: 5.415

3.  tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.

Authors:  Patricia P Chan; Todd M Lowe
Journal:  Methods Mol Biol       Date:  2019

4.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524

7.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
  7 in total

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