Mehdi Zare1, Mohammad S Saleheen1, Nirala Singh2, Mark J Uline1, Muhammad Faheem1,3, Andreas Heyden1. 1. Department of Chemical Engineering, University of South Carolina, 301 Main Street, Columbia, South Carolina 29208, United States. 2. Department of Chemical Engineering and Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109-2136, United States. 3. Department of Chemical Engineering, University of Engineering & Technology, Lahore 54890, Pakistan.
Abstract
Aqueous solvation free energies of adsorption have recently been measured for phenol adsorption on Pt(111). Endergonic solvent effects of ∼1 eV suggest solvents dramatically influence a metal catalyst's activity with significant implications for the catalyst design. However, measurements are indirect and involve adsorption isotherm models, which potentially reduces the reliability of the extracted energy values. Computational, implicit solvation models predict exergonic solvation effects for phenol adsorption, failing to agree with measurements even qualitatively. In this study, an explicit, hybrid quantum mechanical/molecular mechanical approach for computing solvation free energies of adsorption is developed, solvation free energies of phenol adsorption are computed, and experimental data for solvation free energies of phenol adsorption are reanalyzed using multiple adsorption isotherm models. Explicit solvation calculations predict an endergonic solvation free energy for phenol adsorption that agrees well with measurements to within the experimental and force field uncertainties. Computed adsorption free energies of solvation of carbon monoxide, ethylene glycol, benzene, and phenol over the (111) facet of Pt and Cu suggest that liquid water destabilizes all adsorbed species, with the largest impact on the largest adsorbates.
Aqueous solvation free energies of adsorption have recently been measured for phenol adsorption on Pt(111). Endergonic solvent effects of ∼1 eV suggest solvents dramatically influence a metal catalyst's activity with significant implications for the catalyst design. However, measurements are indirect and involve adsorption isotherm models, which potentially reduces the reliability of the extracted energy values. Computational, implicit solvation models predict exergonic solvation effects for phenol adsorption, failing to agree with measurements even qualitatively. In this study, an explicit, hybrid quantum mechanical/molecular mechanical approach for computing solvation free energies of adsorption is developed, solvation free energies of phenol adsorption are computed, and experimental data for solvation free energies of phenol adsorption are reanalyzed using multiple adsorption isotherm models. Explicit solvation calculations predict an endergonic solvation free energy for phenol adsorption that agrees well with measurements to within the experimental and force field uncertainties. Computed adsorption free energies of solvation of carbon monoxide, ethylene glycol, benzene, and phenol over the (111) facet of Pt and Cu suggest that liquid water destabilizes all adsorbed species, with the largest impact on the largest adsorbates.
A heterogeneously catalyzed process starts
with the adsorption
of at least one of the reactants and ends with the desorption of the
products.[1] Activation barriers have also
been correlated to adsorption energies for about 90 years through,
e.g., the well-known Brønsted–Evans–Polanyi (BEP)
relationship that connects thermodynamics with kinetics.[2] Thus, understanding adsorption and desorption
processes is critical for heterogeneous catalysis, and adsorption
processes at gas–solid interfaces have been studied for many
decades.[3−7] For solid–liquid interfaces, less progress has been made,
largely due to the added complexity of the solvent molecules that
can both directly and indirectly interact with the adsorbate through,
e.g., hydrogen bonding and by changing the electronic structure of
the adsorbent. Nevertheless, it is well-known that solvents can affect
important figures of merit in catalysis, such as activity and selectivity,
that go beyond reduced mass transfer rates and nonideality effects
that determine a reactant’s activity/fugacity at a given liquid
concentration.[8−11] These intrinsic solvent effects originate from one or a combination
of the following: nonrandom distribution of solvent and solute molecules
at interfaces and the nature of the solvent (pH, polarity, H-bonding
ability, etc.)[12−14] leading to changes in the relative stabilization
of adsorbed species,[15−17] participation of the solvent in the catalytic cycle
or reaction coordinate,[18] and competitive
adsorption between the solvent and adsorbate molecules.[19−21] Consequently, to design catalysts for enhanced activity, selectivity,
and stability, it is critical to understand the root causes of solvent
effects on adsorption processes in heterogeneous catalysis. Such an
understanding becomes more important the larger the solvation effects
are and the more the solvation effects vary for the various species
and transition states in the catalytic system (changes in trends).
Recently, aqueous solvation effects have been measured on the free
energy of adsorption for phenol, benzyl alcohol, benzaldehyde, and
cyclohexanol over a Pt catalyst at 298 K[22] and for phenol over Pt and Rh catalysts at four temperatures (283,
288, 298, and 314 K).[23,24] Importantly, for phenol adsorption
on supported Pt catalysts, it has become possible to deconvolute the
adsorption isotherm data for the different surface facets, which enabled
the measurement of the aqueous solvent effect on the phenol adsorption
free energy on the Pt(111) facet, which again facilitates a correlation
to computational studies. Experimentally measured aqueous solvation
effects are large (>1.0 eV at 298 K) and endergonic for phenol
on
Pt(111), suggesting that the kinetic properties of Pt nanoparticles
for phenol catalysis are a strong function of solvent properties.
In addition, recent simulations suggest that solvation effects are
not only a strong function of adsorbate but also of the nature of
the catalyst surface (e.g., Pt vs Cu).[25] Solvation effects do not cancel out in a descriptor-based catalyst
design strategy, and solvation effects need to be considered explicitly.
Differences in 1 eV in adsorption free energy are just too large as
they could be neglected in any descriptor-based catalyst design strategy.
We highlight that at 298 and 500 K, a change in a rate-controlling
free-energy barrier of 0.1 eV can change the overall rate by factors
of 50 and 10, respectively. However, measurements are indirect and
involve adsorption isotherm models, which potentially reduces the
reliability of the extracted energy value. Also, computational, implicit
solvation models predict significantly smaller and exergonic solvation
effects on the free energy of phenol adsorption on Pt(111), failing
to even qualitatively agree with the experimental measurements.[23]Despite the availability of fairly established
methods for computing
the energetics of adsorption reactions at gas–solid interfaces,
methods capable of quantifying the adsorption (free) energies at solid–liquid
interfaces are less developed. This is partly due to the limited availability
of experimental[21,26−28] and theoretical
studies[29−41] and partly due to inherent intricacy of a reaction system comprised
of both a complex heterogeneous catalyst and a condensed phase. Although
“on the fly” electronic structure calculations in ab initio molecular dynamics (AIMD)[42−44] simulations
are well-suited for this task, as a result of the large computational
cost associated with quantum mechanical calculations and configuration
space sampling, AIMD simulations for computing adsorption free energies
from a condensed phase are currently impractical (with small confidence
interval from configuration space sampling). Typically, the high computational
cost of AIMD constrains both the size of the simulation system to
a few hundred atoms and the time scale of simulations to a few picoseconds.[45−47] Alternatively, implicit solvation schemes[48,49] and classical force field simulations offer a practical approach
that is computationally affordable. However, force field simulations
require a reliable potential for all fluid components with the adsorption
site/metal surface, which, except for perhaps water, is hardly available
due to a lack of reliable experimental data. Similarly, performance
reliability is largely unknown for adsorption on metal surfaces with
implicit solvation models due to the need to parameterize the implicit
solvation models against experimental data that are again hardly available
or possess unknown error bars. We highlight that for homogeneous systems,
implicit solvation models have been exceptionally successful despite
their limitations in capturing anisotropic site-specific interactions
(e.g., hydrogen bonding).[50,51] The success of the
implicit solvation models for homogeneous catalysis studies (relative
to heterogeneous catalysis) can be understood by the metal site being
surrounded by ligands in homogeneous catalysts, i.e., the metal site
is not directly exposed to solvent molecules, while in heterogeneous
catalysts, there are no ligands shielding the metal site from the
solvent molecules.To overcome these challenges for heterogeneous
catalysis, a number
of research groups have recently developed combined quantum mechanical/molecular
mechanical (QM/MM) approaches for predicting free-energy changes for
processes on solid–liquid interfaces.[34,36,37,52−54] In this class of simulations, the essential region of interest,
that can often not be properly described by classical force fields,
is described quantum mechanically, while the remainder of the system
is described at the MM level of theory, enabling a balance of computational
cost and accuracy. For example, in a metal-catalyzed adsorption reaction,
adsorbate, active site, and its immediate metal neighbors are treated
from first principles (called QM system/subsystem in this study),
while the bulk of the solvent molecules and the nonreactive part of
the simulation system are treated using classical force fields (called
MM system/subsystem in this study). In this regard, we previously
developed a computationally affordable and reliable method for computing
free-energy changes in the presence of solvents using a hybrid QM/MM
approach with electrostatic embedding, named Explicit Solvation for
Metal Surfaces (eSMS)[55] and applied it
to several surface reactions over various transition-metal surfaces.[25,56]A limitation of this previously developed eSMS has been that
it
can only be applied for computing free-energy differences of surface
reactions; that is, it can practically not be employed to compute
free energies of adsorption processes from a liquid-phase environment
due to (i) the long reaction coordinate in adsorption processes that
increases the computational expense, and (ii) the need to be able
to compute the free energy of the quantum mechanically described part
of the simulation system within the harmonic approximation, i.e.,
only the classically described part of the simulation system is sampled
extensively within eSMS. In this study, we identify a reaction coordinate
for adsorption processes that enables our eSMS approach to predict
adsorption free energies at a solid–liquid interface. Next,
we validate our novel computational scheme against previous eSMS calculations
of the aqueous solvation effect on the activation free-energy barrier
of O–H bond cleavage of ethylene glycol, EG (C2H6O2), over a Cu(111) catalyst surface model[25] by computing the adsorption free energy of both
the reactant and transition state. Next, we compute the aqueous solvation
effect on the free energy of phenol adsorption on the Pt(111) surface,
and we reanalyze the experimental data for this solvation free energy
using multiple adsorption isotherm models. Computational predictions
at 298 K are in good agreement with the experimental data with remaining
errors likely originating from errors in the metal–water interaction
potential. Thus, these results confirm a large endergonic aqueous
solvation free energy for phenol adsorption with significant implications
for the catalyst design for the conversion of aromatic molecules.
To elucidate the significance of these large, computed and measured,
solvation effects for the Pt–phenol system for various other
catalytic processes, we computed the aqueous solvation effect on the
adsorption free energies of benzene over Pt(111) and carbon monoxide
(CO), ethylene glycol (EG), and phenol (Ph) over Pt(111) and Cu(111)
surfaces.
QM/MM-FEP Scheme for Adsorption Processes at a Solid–Liquid
Interface
The key challenge for computing the free energy
of adsorption in a liquid-phase environment with a hybrid quantum
mechanical/molecular mechanical free-energy perturbation (QM/MM-FEP)
scheme is identifying an efficient thermodynamic cycle. Specifically,
to reduce the computational cost, the harmonic approximation must
remain meaningful for the quantum mechanically described subsystem
in the reactant and product states, and extensive configuration space
sampling can only be necessary for the classically described part
of the simulation system. Furthermore, the reaction coordinate must
be relatively smooth and not involve overcoming large free-energy
barriers, such that, only few (computationally expensive) free-energy
perturbation (FEP) steps are required for computing the overall free-energy
difference. Figure illustrates such a thermodynamic cycle that is explained below.
A detailed computational methods section is presented below in the Methodssection of this article. The key idea of
our thermodynamic cycle is to not compute the desorption
of an adsorbate into a liquid phase but to only compute the solvent
effect on the desorption process. In this way, free-energy differences
for the overall process are smaller, and desorption itself is only
the gas-phase desorption, which can be described using the harmonic
approximation or correction formulas to the harmonic approximation.[57,58]
Figure 1
Free-energy
perturbation approach for computing the difference
in the adsorption/desorption free energy of any adsorbed species in
the presence of liquid water (blue circle solid (g) + *(l) ↔
purple circle solid*(l))
and in a gas phase (blue circle solid(g) + *(g) ↔ blue circle
solid*(g)), i.e., for desorption: purple circle solid*(l) + *(g) ↔
*(l) + blue circle solid *(g). Between state Iopt,0 and
Iopt, the coordinates of the metal surface in the gas-phase
system change to those metal coordinates in a system with adsorbate.
There is no change in the liquid-phase system. Between state Iopt and I, the coordinates of the adsorbate atoms described
quantum chemically in the liquid-phase system transition from those
optimized in the liquid to those optimized in the gas phase. There
is no change in the gas-phase system. Between states I and II, the
(classical) electrostatic interaction between the solvent and the
adsorbate is slowly removed in the liquid-phase system. No coordinates
of atoms described quantum chemically change. Intermediate states,
such as state Ia, are “nonphysical” states, which is
typical for FEP calculations. From state II to III, the nonclassical
contributions of water molecules changing the electronic structure
of the quantum system transition from those of a metal–adsorbate
system to those without the adsorbate, i.e., this energy difference
constitutes the main difference between electrostatic and mechanical
embedding of the QM/MM system. Green circle solid symbolizes the adsorbate
being only present in the classical DL_POLY simulation and not in
the quantum system. van der Waals interactions between the solvent
and the adsorbate are slowly removed between states III and IV. No
coordinates of atoms described quantum chemically change. Intermediate
states, such as state IIIa, are again “nonphysical”
states. From state IV to state IVopt, the surface atom
coordinates in liquid transition to the optimized coordinates of a
free site. There is no change in the gas-phase system. The gas-phase
desorption is described between states IVopt and V. The
(free) energy difference between states IVopt and Iopt,0 is the solvent effect on the stability of the adsorbate.
Free-energy
perturbation approach for computing the difference
in the adsorption/desorption free energy of any adsorbed species in
the presence of liquid water (blue circle solid (g) + *(l) ↔
purple circle solid*(l))
and in a gas phase (blue circle solid(g) + *(g) ↔ blue circle
solid*(g)), i.e., for desorption: purple circle solid*(l) + *(g) ↔
*(l) + blue circle solid *(g). Between state Iopt,0 and
Iopt, the coordinates of the metal surface in the gas-phase
system change to those metal coordinates in a system with adsorbate.
There is no change in the liquid-phase system. Between state Iopt and I, the coordinates of the adsorbate atoms described
quantum chemically in the liquid-phase system transition from those
optimized in the liquid to those optimized in the gas phase. There
is no change in the gas-phase system. Between states I and II, the
(classical) electrostatic interaction between the solvent and the
adsorbate is slowly removed in the liquid-phase system. No coordinates
of atoms described quantum chemically change. Intermediate states,
such as state Ia, are “nonphysical” states, which is
typical for FEP calculations. From state II to III, the nonclassical
contributions of water molecules changing the electronic structure
of the quantum system transition from those of a metal–adsorbate
system to those without the adsorbate, i.e., this energy difference
constitutes the main difference between electrostatic and mechanical
embedding of the QM/MM system. Green circle solid symbolizes the adsorbate
being only present in the classical DL_POLY simulation and not in
the quantum system. van der Waals interactions between the solvent
and the adsorbate are slowly removed between states III and IV. No
coordinates of atoms described quantum chemically change. Intermediate
states, such as state IIIa, are again “nonphysical”
states. From state IV to state IVopt, the surface atom
coordinates in liquid transition to the optimized coordinates of a
free site. There is no change in the gas-phase system. The gas-phase
desorption is described between states IVopt and V. The
(free) energy difference between states IVopt and Iopt,0 is the solvent effect on the stability of the adsorbate.To facilitate understanding of our QM/MM-FEP scheme,
we first summarize
here the physical meaning of the different steps shown in Figure before discussing
all steps in more detail in the forthcoming paragraphs. We start from
a state containing two systems: a system with adsorbed species in
a liquid with the QM subsystem coordinates optimized in the liquid
and a second (clean) gas-phase optimized adsorbent system in vacuum
(Iopt,0). The second, (clean) gas-phase optimized adsorbent
system is identical in both the initial and final states (V). The
final state (V) consists of the (clean) gas-phase optimized system,
an adsorbate in the gas phase, and a (clean) liquid-phase system with
QM system coordinates optimized in the liquid. Thus, the free-energy
difference between states V and Iopt,0 is the free energy
of adsorption from the gas phase and a (clean) liquid-phase system
to an adsorbed state in liquid. The presence of the second (clean)
gas-phase optimized system might appear confusing at the beginning;
however, it will facilitate the overall free-energy calculation, specifically
step II-to-III discussed below. First, we change the gas-phase optimized
(clean) adsorbent coordinates in vacuum to those coordinates of the
adsorbent when the adsorbate is adsorbed on the adsorbent in the gas
phase (Iopt). There is no change in the liquid-phase system
such that this is technically not an FEP calculation. Second, we transform
the liquid-phase optimized system to a state I in liquid where the
QM subsystem coordinates are those of a gas-phase optimized system.
There is no change in the second gas-phase system; however, at the
end of this transformation, the adsorbent atom coordinates are equivalent
in both systems. This free-energy difference considers the fact that
adsorbate and adsorbent coordinates are somewhat different in a liquid
and gas-phase environment. Third, the classical electrostatic interactions
between the adsorbate (and neighboring adsorbent) atoms and the water
molecules are removed to reach to state II. Again, there is no change
in the second gas-phase system. Fourth, the polarization of the adsorbent–adsorbate
subsystem, induced by the presence of water molecules (point charges),
is changed to a polarization of the adsorbent system in the absence
of the adsorbate to reach state III. This step involves removing the
adsorbate from the QM part of the QM/MM calculation for the liquid-phase
system and adding the adsorbate to the second gas-phase system. The
QM atom coordinates are equivalent in both systems, which facilitates
this FEP calculation that involves no intermediate states. This step
is different from the removal of the classical electrostatic interactions
as it considers the effect of the point charges on the quantum chemically
described subsystem. We call this step removal of nonclassical electrostatic
effects, and hence, all electrostatic interactions are removed at
state III. Fifth, the Lennard-Jones interactions are gradually removed
in the liquid-phase system to reach state IV. There is no change in
the second gas-phase system. In the liquid-phase system of state IV,
there are no interactions between the adsorbate and the liquid molecules,
and the adsorbate is exclusively in the second gas-phase system. However,
the adsorbent coordinates in the liquid-phase system, that surrounded
the adsorbate, are still those that were deformed by the adsorbate.
Hence, in the sixth step, the adsorbent coordinates are transformed
to those of the liquid-phase optimized adsorbent without adsorbate
(state IVopt). Again, there is no change in the second
gas-phase system that contains the adsorbate. Finally, the adsorbate
is removed to its free state in the second gas-phase system (state
V). There is no change in the liquid-phase system, and this is a typical
gas-phase desorption calculation. A more detailed explanation of these
steps for computing solvent effects for adsorption/desorption on a
metal surface is provided in the following.
Step Iopt,0 to Iopt in Figure
Between states Iopt,0 and Iopt, the coordinates of the metal surface
in the gas-phase system (optimized free site) change to those metal
coordinates in a system with adsorbate. This is often a significant
change in energy, but it does not involve the liquid-phase system
and hence, no FEP calculation is involved in this change.
Step Iopt to I in Figure
The QM atom coordinates of the
metal–adsorbate cluster system in liquid are optimized in liquid
in state Iopt,0, while they are those optimized in the
gas phase in state I. The free-energy change for this transition in
QM atom coordinates involves standard eSMS free-energy calculations
that involve a number of QM and MM calculations that are reasonably
fast given the small change in QM atom coordinates during adsorption
of typical adsorbates on a metal surface.[8,25,55,56] We note that
for simplicity, only the coordinates of the adsorbate atoms (not metal
atoms) described quantum chemically in the liquid-phase system transition
from those optimized in the liquid to those optimized in the gas phase.
The change in metal atom coordinates was found to be too small to
justify the required computational effort. Specifically, the total
potential energy function of our eSMS method is given in eq , where the first term constitutes
the conventional gas-phase energy computed for a periodic slab model
and the combination of the second to fifth terms is the nonclassical
part of the electrostatic interaction energy of a mean-field liquid-phase
environment with the adsorbate and metal surface described quantum
mechanically by a cluster model. We have previously shown that unlike
gas-phase adsorption energies on metal particles, this nonclassical
part of the electrostatic interaction energy is fast converging with
the metal-cluster size such that reliable energies can be computed
for relatively small metal clusters of ∼50 metal atoms. The
last term accounts for the classical (electrostatic and van der Waals)
interaction energy within the MM subsystem and its interaction with
the QM subsystem. The full derivation of eq can be found elsewhere.[59]In eq , the first term, EQMSurface (r̲QM), is evaluated for a periodic slab
in vacuum, using the VASP[60,61] program package, and
the second term, EQMcluster(r̲QM), is evaluated for a QM cluster in vacuum, with the help of the
TURBOMOLE program package.[62−64] The combination of the third–fifth
terms is a QM calculation in a mean field of MM water molecules using
the periodic electrostatic embedded cluster method (PEECM)[65] with the fixed charge approximation (the fixed
charge approximation has been validated for our eSMS approach in ref (59)). We note that the number
100 in the equation indicates that 100 MM conformations, selected
equally spaced from 1 ns molecular dynamics (MD) simulations (10 ps
apart), were used to represent the mean field of the MM water molecules.
We also note that subscripts QM, MM, and QM/MM indicate QM subsystem
(metal cluster and adsorbate), MM subsystem (e.g., TIP3P water molecules
and the rest of the metal atoms), and the interface of the QM and
MM subsystems, respectively (this also applies to eq ). A rationale for using the various
periodic and nonperiodic density functional theory (DFT) codes is
given in the Supporting Information (SI).
Step I to II in Figure : Classical Electrostatic Interaction Removal
In
our QM/MM potential energy function of the reaction system, the electrostatic
interactions between the adsorbed species and the metal atoms in direct
vicinity of the adsorbate and the solvent molecules are governed by
the magnitude and distance of the partial charges. To remove the electrostatic
potential, first, partial charges on the “metal–adsorbate
cluster” (see Figure S7) and “metal
cluster” are computed using a suitable charge model (we used
NPA[66] and DDEC6[67] in this study—see SI for a more
detailed explanation). We note that the metal cluster is a “nonphysical”
state in which the adsorbate is present but does not electrostatically
interact with the surrounding water molecules that are treated classically,
i.e., the partial charges on the adsorbate are set to zero (Qads = 0). Thus, to calculate the charges on
the metal atoms in the “metal-cluster” system, the adsorbate
atoms are removed from the “metal–adsorbate cluster”
system during the charge calculation. Next, we insert adequate “nonphysical”
intermediate states (such as state Ia in Figure ) in between by linearly reducing the magnitude
of partial charges on the QM atoms going from the metal–adsorbate
to the metal cluster. Table S3 summarizes
the charges on the QM atoms of these two states for different adsorbates
studied in this work.Since the QM atom geometry remains the
same during the removal of the electrostatic interaction, all terms
in the potential energy function in eq , except the classical EMM+QM/MMelec+vdW(r̲QM,r̲MM) term, remain the same in every intermediate state and hence, they
do not need to be computed in an FEP step calculation. In other words,
removing the classical electrostatic interaction involves no QM calculations
but only classical free-energy calculations.
Step II to III in Figure : Nonclassical Electrostatic Effects due to Changes in Polarization
by the Solvent
The nonclassical contribution of the solvent
molecules changing the electronic structure of the quantum system
transitions from those of a metal–adsorbate system to those
without the adsorbate, i.e., this energy difference constitutes the
main difference between electrostatic and mechanical embedding of
the QM/MM system. The energy difference is given bywhere the metal-(ads)-solvent and metal-ads-solvent
superscripts represent states III and II, respectively (the first
and last terms in parenthesis are performed using the TURBOMOLE program
package). This step involves a QM calculation; however, the free-energy
change calculation is not a strong function of solvent coordinates
(only the computational description of a “nonphysical”
state changes) and although the free-energy differences are significant,
multiple independent calculations suggest that this free-energy change
can efficiently be computed without introducing intermediate states
(which would be impractical). Here, we also note that given the magnitude
of the free-energy change from state II to III, electrostatic embedding
is superior to mechanical embedding (that does not consider these
nonclassical electrostatic contributions) for QM/MM-FEP calculations
of metallic systems where electrons move freely.
Step III to IV in Figure : van der Waals Interaction Removal
Another interaction
between the solvent and the adsorbate is the classical van der Waals
(vdW) interaction. To remove the vdW interaction, we followed the
classical approach of scaling of the distance-shifted Lennard-Jones
(LJ) potentials.[68] This approach allows
for a smooth transition in molecular simulations between real and
dummy atoms for which all atomic interactions have vanished. The LJ
potential that we implemented in the DL_POLY program package to annihilate
or create an atom has the following functional formwhere λ is the coupling parameter in
the FEP calculation, r is the interatomic distance
between two atoms, and A and B are
repulsive and attractive LJ parameters, respectively, calculated as
a product of LJ parameters specific for each atom type of the interacting
particles (A = 4εσ12, B = 4εσ6; see Table S1 for ε and σ values we used in this work).
For λ = 0, the vdW interactions fully exist and an increase
in λ leads to a smooth disappearance of the vdW interactions.
Finally, at λ = 1, the interaction between the solvent molecules
and the adsorbate is zero everywhere, corresponding to the final state
where the adsorbate atom is transformed to a dummy particle. The shift
parameter δ comes into play for λ larger than zero. It
allows for a smooth transition from the original LJ potential to no
interaction. As recommended by Zacharias et al.,[68] the parameter δ was chosen as the square of the vdW
radius of the interacting atoms to allow the smoothest transition
between an atom present on the surface and filling the cavity after
molecule annihilation. Table S4 summarizes
all δ parameter values for all pair interaction terms and, as
an example, Figure S2 illustrates the LJ
potential as a function of the distance between the oxygen atom of
an adsorbed CO and the oxygen atom of a (TIP3P) water molecule for
different values of λ.To enable a reliable free-energy
difference calculation, the removal of the vdW interactions between
the solvent and the adsorbate is done in multiple steps by linearly
increasing λ from 0 to 1. We note that these intermediate states,
such as state IIIa (see Figure ), are “nonphysical” states. Analogous to the
removal of the classical electrostatic interactions, in the potential
energy function, eq , only the Eelec+vdW(r̲QM,r̲MM) term
changes between two consecutive states and no QM calculations are
required for this step, i.e., only classical free-energy calculations
are performed at the MM level of theory. At this point, all classical
interactions between the adsorbate and the solvent have vanished.
Step IV to IVopt in Figure
Given that the quantum atom coordinates
of the metal cluster are still those in the gas-phase adsorbed state
(obtained by removing the adsorbate atoms of the metal-cluster adsorbate
in state I) and not those in the gas-phase optimized metal cluster
(free site), the free-energy change for this transition in QM atom
coordinates needs to be computed. This again involves standard eSMS
free-energy calculations.[8,25,55,56] We note that for all free-energy
calculations, we employ the Bennett acceptance ratio (BAR) as the
free-energy estimator for all FEP steps.[69]
Step IVopt to V in Figure : Gas-phase Desorption
We use for
the adsorbate as reference state, the adsorbate in a gas phase in
equilibrium with the adsorbate in the liquid phase. Thus, only a typical
gas-phase metal adsorption calculation at the QM level of theory is
required for this step.The free-energy change from state Iopt,0 to state V constitutes the free-energy change from an
adsorbed molecule surrounded by a solvent to the adsorbent (metal
surface) surrounded by a solvent and the adsorbate in a gas-phase
state. Thus, the free-energy change from state Iopt,0 to
state IVopt constitutes the solvent effect on a desorption
process (ΔΔGAdsorbateliq→gas(desorption) = −ΔΔGAdsorbategas→liq(adsorption) and ΔΔGAdsorbategas→liq = ΔGAdsorbateg–l – ΔGAdsorbategas) that is likely not as DFT functional dependent as the gas-phase
adsorption energy.[70] Also, the activity/fugacity
calculation of the adsorbate in gas phase is often significantly easier
than such a calculation in a solvent. In this paper, we assumed the
gas phase to behave as an ideal gas. For adsorbates with very low
gas pressure, where it is challenging to measure the fugacity, the
gas–liquid partition coefficient (equilibrium constant) can
be computed from COSMO-RS calculations that are quite reliable for
this task.
Results and Discussion
Numerical Verification of the Proposed Thermodynamic Cycle
To numerically verify the proposed methodology for adsorption/desorption
processes, the aqueous-phase effect on the free energy of activation
(ΔΔGliq‡ = ΔGliq‡ –
ΔGgas‡) of the O–H bond cleavage of
ethylene glycol over a Cu(111) surface at 423 K is computed using
two different approaches, the eSMS methodology for surface reactions[25] and the adsorption scheme proposed here. In
our proposed adsorption scheme, the solvent effect on the activation
barrier (ΔΔGliq‡) is given by eq where ΔΔGTSgas→liq and
ΔΔGReactantgas→liq indicate the solvent effect
on the adsorption of the transition state (TS) and reactant state
(RS), respectively.Figure a illustrates the free-energy profile of the solvation
effects on the desorption of the RS and TS (ΔΔGAdsorbateliq→gas(desorption) = −ΔΔGAdsorbategas→liq (adsorption)). For both the RS and TS of the
O–H bond cleavage of EG on the Cu(111) surface at 423 K, the
transition of the QM atom coordinates (Iopt,0-to-I) leads
only to a small free-energy change relative to the overall solvent
effect. The transition state is significantly stabilized (ΔΔGTSgas→liq = −0.48 ± 0.03 eV, ΔΔGRSgas→liq =
0.14 ± 0.01 eV; see Table S5), while
the reactant state is destabilized in liquid water (we note that free-energy
profiles in Figure are plotted for the desorption process) leading to a significantly
reduced activation free-energy barrier. Both the RS and TS are similarly
destabilized through the creation of a solvent cavity on the surface
as shown in the change in free energy during the removal of the van
der Waals/Lennard-Jones interactions (see Table S5). In contrast, the classical electrostatic interactions
stabilize the RS and TS in solution (ΔΔGEL-Rmv, RSliq→gas = 0.49 eV, ΔΔGEL-Rmv, TSliq→gas = 1.25 eV). The difference in classical stabilization can be attributed
to the significant change in partial charges of the QM system going
from RS to TS (see Table S3a). In particular,
the charge of the cleaved hydrogen atom has transitioned from 0.47
e in RS to −0.16 e in TS, explaining the 0.76 eV difference
in solvent stabilization due to classical electrostatic interactions.
Overall, the electrostatic interaction effect is, however, altered
by the nonclassical electrostatic interactions from section “II-to-III”.
The latter effect is ignored in molecular embedding calculations (ΔΔGII-to-III, RSliq→gas = −0.05 eV, ΔΔGII-to-III, TSliq→gas = −0.21 eV). Therefore,
we conclude that electrostatic embedding of the QM/MM system is crucial
in any hybrid QM/MM approach for metallic reaction systems.
Figure 2
(Average) free-energy
profiles for aqueous-phase effects on the
desorption (ΔΔGliq→gas = −ΔΔGAdsorbategas→liq) of (a) reactant and transition
states of O–H bond cleavage of ethylene glycol over a Cu(111)
surface at 423 K, (b) CO molecule over Cu(111) and Pt(111) surfaces
at 298 K, (c) ethylene glycol molecule over Cu(111) and Pt(111) surfaces
at 423 K, and (d) phenol molecule over Cu(111) and Pt(111) surfaces
at 298 K. ΔΔG (ΔΔGAdsorbateliq→gas) is the aqueous-phase effect on the low coverage
desorption of an adsorbate. See Figure for more information about the physical meaning of
states Iopt,0, I, II, III, IV, IVopt. “Remove
electrostatic” and “remove Lennard-Jones” represent
the removal of classical electrostatic and Lennard-Jones interactions
between an adsorbate and the water molecules, respectively. For the
magnitude of each contribution, see Tables and S5. We note
that the jump at the beginning of the free-energy profiles corresponds
to the transition of state Iopt,0 to state Iopt in Figure . There
is no change in the liquid-phase system but only in the gas-phase
system and hence, this is technically not an FEP step.
(Average) free-energy
profiles for aqueous-phase effects on the
desorption (ΔΔGliq→gas = −ΔΔGAdsorbategas→liq) of (a) reactant and transition
states of O–H bond cleavage of ethylene glycol over a Cu(111)
surface at 423 K, (b) CO molecule over Cu(111) and Pt(111) surfaces
at 298 K, (c) ethylene glycol molecule over Cu(111) and Pt(111) surfaces
at 423 K, and (d) phenol molecule over Cu(111) and Pt(111) surfaces
at 298 K. ΔΔG (ΔΔGAdsorbateliq→gas) is the aqueous-phase effect on the low coverage
desorption of an adsorbate. See Figure for more information about the physical meaning of
states Iopt,0, I, II, III, IV, IVopt. “Remove
electrostatic” and “remove Lennard-Jones” represent
the removal of classical electrostatic and Lennard-Jones interactions
between an adsorbate and the water molecules, respectively. For the
magnitude of each contribution, see Tables and S5. We note
that the jump at the beginning of the free-energy profiles corresponds
to the transition of state Iopt,0 to state Iopt in Figure . There
is no change in the liquid-phase system but only in the gas-phase
system and hence, this is technically not an FEP step.
Table 2
Contributions to Aqueous-Phase Effect
on the Free Energy (in eV) of Low Coverage Desorption (ΔΔGAdsorbateliq→gas = –ΔΔGAdsorbategas→liq) of Ethylene Glycol at 423 K (See Figure c), Carbon Monoxide at 298
K (See Figure b),
Phenol at 298 K (See Figure d) over the (111) Facets of Pt and Cu Catalysts, and of Benzene
at 298 K over the Pt(111) Surface (See Figure S6)a
surface
adsorbate
Iopt,0-to-Iopt
Iopt-to-I (to OPT adsorbate in liquid)
I-to-II (remove electrostatic potential)
II-to-III (electrostatic embedding)
III-to-IV (remove
Lennard-Jones potential)
IV-to-IVopt (to OPT site in gas)
Cu(111)
ethylene glycol@423 K
0.04
0.07 ± 0.00
0.49 ± 0.00
–0.05 ± 0.01
–0.64 ± 0.00
–0.05 ± 0.00
carbon monoxide@298 K
0.04
0.00 ± 0.00
0.00 ± 0.00
0.00 ± 0.00
–0.30 ± 0.02
–0.04 ± 0.00
phenol@298 K
0.02
–0.02 ± 0.00
0.12 ± 0.00
–0.04 ± 0.01
–0.89 ± 0.01
–0.01 ± 0.00
Pt(111)
ethylene glycol@423 K
0.01
–0.01 ± 0.00
0.46 ± 0.00
–0.02 ± 0.01
–0.72 ± 0.01
–0.14 ± 0.00
carbon monoxide@298 K
0.16
0.00 ± 0.00
0.04 ± 0.00
–0.01 ± 0.00
–0.37 ± 0.02
–0.16 ± 0.01
phenol@298 K
0.37
–0.01 ± 0.00
0.40 ± 0.00
–0.07 ± 0.02
–1.02 ± 0.01
–0.45 ± 0.00
benzene@298 K
0.37
0.00 ± 0.00
0.28 ± 0.00
–0.06 ± 0.02
–0.99 ± 0.06
–0.43 ± 0.00
All numbers contain a 95% confidence
interval based on limited water sampling obtained by performing multiple
independent simulations.
Finally, when considering the vibrational contributions,
the overall
aqueous solvent effect on the adsorption free energy (ΔΔGAdsorbategas→liq) is 0.14 ± 0.01 eV for the RS and −0.48
± 0.03 eV for the TS, such that the solvent effect on the activation
barrier (ΔΔGliq‡) is −0.62 ± 0.03
eV. This agrees very well with our previous study, where we used eSMS
for surface reactions and found ΔΔGliq‡,eSMS =
−0.56 ± 0.04 eV.[25]
Phenol Adsorption on Pt(111) at 298 K in Liquid Water
Using the proposed QM/MM-FEP scheme, we computed the solvent effect
on the adsorption free energy of phenol at low coverage (ΔΔGPhgas→liq (θPh = 0)) and at 298 K to be 0.78 ± 0.01
eV. To compare our result to the experimental work from Singh et al.,[23,71] we used the adsorption model from Nitta et al.[72,73] that considers the ability of adsorbates to cover multiple active/metal
sites and that can be derived from statistical mechanics. According
to the experimental work, only hydrogen and phenol are present in
the aqueous phase and can adsorb on the Pt surface, hencewhere θPh, θH, and θ* are the surface coverages of phenol, hydrogen,
and free site (covered by water), respectively, and n indicates the number of sites that a phenol molecule can occupy
when adsorbed on the surface. We note that we have defined the “surface
coverage of species i” asi.e., the “real” surface coverage
is nθ. Using statistical mechanics and performing some
algebra, we reach the following equation for the adsorption isotherm
(see the Supporting Information for the
full derivation)where Kgas (θPh = 0) is gas-phase adsorption equilibrium constant of phenol
at low coverage (at 298 K: ΔHPhgas = −200 kJ/mol,[74] ΔSPhgas = −14.7R[75]), KH,Ph is Henry’s
constant for phenol in water (at 298 K: KH,Ph = 5 × 10–4 bar/M[76]), CPh is the concentration of phenol
in the aqueous phase, γH is a constant taking into
account a hydrogen coverage effect (the γH parameter
represents the hydrogen (or any other species) surface coverage relative
to the free site coverage, e.g., γH = 0 is the zero
H coverage approximation and γH = 10 means the H
coverage is 10 times as large as the free site coverage), αPh,Phliq is a constant
associated with adsorbed phenol–phenol lateral interactions
in liquid, R is the gas constant, T is the system temperature, and finally ΔΔGPhgas→liq(θPh = 0) is the solvent effect on the low coverage
phenol adsorption defined asWe note here that ΔGads,Phl and
ΔGads,Phg–l are the adsorption free energies of phenol in the aqueous phase
from its solvated state in solution and from its free state in the
gas phase, respectively, and ΔGPhsolvation is the
solvation free energy of phenol, which can be obtained from Henry’s
constant at relevant temperatures.[76]Next, we fitted eq to the experimental data at different phenol concentrations at 298
K to extract ΔΔGPhgas→liq(θPh = 0) and αPh,Phliq. Figure shows the best fits for different n and γH that are experimentally not known in liquid water. A change
of γH from 0 to 1 only changes ΔΔGPhgas→liq(θPh = 0) by less than 0.10 eV; however, for a larger
γH (high hydrogen coverage) such as 10 (10 times
higher hydrogen coverage relative to the free site coverage), this
change is about 0.25 eV. Experimental work claims γH < 1.0 since the partial pressure of hydrogen is quite low. Furthermore,
the plots in Figure indicate that the fits with lower n predict the
higher concentration data better, while a higher n leads to better fits at a low phenol concentration (see also Figure S8). We attribute this observation and
the fact that, for a fixed n value, we fit a negative
lateral phenol–phenol interaction parameter αPh,Phliq to different
phenol orientations on the surface at low and high coverages. At low
coverage, phenol adsorbs horizontally parallel to the surface, while
increasing the phenol coverage forces the adsorbed phenol molecules
to slant upward to occupy less space on the surface for additional
adsorbed phenol molecules (see Figure S9). Fortunately, ΔΔGPhgas→liq(θPh = 0) is not very sensitive to the n value and we
conclude that independent of these intricacies, the experimental ΔΔGPhgas→liq(θPh = 0) value (1.14 eV) is in good agreement with
our computational predictions (0.78 eV) of a strong endergonic solvent
effect. Aqueous solvation effects are indeed large for phenol adsorption
on Pt(111) with significant consequences for the metal catalyst design
for conversion of similar reactants. In this context, we note that
using a stronger adsorbing force field for the Pt–water interaction
will lead to a reduced difference between the computational prediction
and experimental measurement. Interestingly, the computationally predicted
low coverage free energy of phenol adsorption in liquid water, ΔGadsg–l ≈ −0.8 eV, is even closer to the experimentally measured
one (between −0.5 and −0.6 eV), as PBE-D3 with harmonic
approximation slightly underpredicts the gas-phase adsorption free
energy relative to the best experimental prediction.
Figure 3
Fits of eq (adsorption
isotherm) to the experimental data (green circles) of the aqueous-phase
phenol adsorption on a Pt(111) catalyst surface at 298 K from Singh
et al.[23,71] (see Figures S10–S12 for similar plots at different temperatures). The γH parameter represents the hydrogen surface coverage relative to the
free site coverage (γH = 0 shows zero H coverage
approximation and γH = 10 means the H coverage is
10 times as large as the free site coverage), n represents
the number of sites a phenol molecule occupies when adsorbed on the
surface, α (αPh,Phliq) is a constant associated to the phenol–phenol
lateral interactions on the surface in water, and ΔΔG (ΔΔGPhgas→liq (θPh = 0)) is the aqueous-phase effect on the low coverage phenol adsorption
on the surface. SSR is the sum of squared residuals, which shows the
error associated with each fit.
Fits of eq (adsorption
isotherm) to the experimental data (green circles) of the aqueous-phase
phenol adsorption on a Pt(111) catalyst surface at 298 K from Singh
et al.[23,71] (see Figures S10–S12 for similar plots at different temperatures). The γH parameter represents the hydrogen surface coverage relative to the
free site coverage (γH = 0 shows zero H coverage
approximation and γH = 10 means the H coverage is
10 times as large as the free site coverage), n represents
the number of sites a phenol molecule occupies when adsorbed on the
surface, α (αPh,Phliq) is a constant associated to the phenol–phenol
lateral interactions on the surface in water, and ΔΔG (ΔΔGPhgas→liq (θPh = 0)) is the aqueous-phase effect on the low coverage phenol adsorption
on the surface. SSR is the sum of squared residuals, which shows the
error associated with each fit.
Benzene Adsorption on Pt(111) at 298 K in Liquid Water
In the gas phase, benzene adsorbs on Pt terrace sites with its molecular
plane parallel to the surface, and the most energetically favored
adsorption site was found to be the bridge 30 conformation (Figure S7h), which agrees well with previous
experimental[77] and theoretical studies.[78] Singh et al.[22] measured
aqueous-phase benzene adsorption over a Pt(111) electrode surface[79] and concluded that at ∼50% coverage of
benzene (i.e., 0.125 ML or 0.1 ML benzene coverage, assuming each
benzene occupies four or five sites, respectively), the free energy
of adsorption of benzene in the aqueous phase from its solvated state
(C6H6(l) + *(l) ↔ C6H6*(l)) is approximately −14 kJ/mol. To calculate the
adsorption free energy of benzene in the aqueous phase from its free
state in the gas phase (C6H6(g) + *(l) ↔
C6H6*(l)), we can utilize Henry’s law
constant for benzene at 298 K (KH = 5
bar M–1),[22] ΔGsolvation = −RT ln KH = +4 kJ/mol. Hencewhere ΔGadg–l is the free energy of adsorption of benzene in the aqueous phase
from its gas-phase reference state. To compute the solvent effect
on the benzene adsorption free energy, we also need to estimate the
free energy of benzene adsorption in the gas phase (C6H6(g) + *(g) ↔ C6H6*(g)) such thatwhere ΔΔGgas→liq is the solvent effect on benzene adsorption.
Campbell et al.[77] studied the gas-phase
heat of adsorption of benzene over the Pt(111) surface at 300 K using
single crystal adsorption calorimetry (SCAC) and reported that the
heat of adsorption of benzene follows a quadratic expression in coverage
up to 0.14 ML coverage, ΔHadsg = 197 – 314θ –
3546θ2 kJ/mol. Hence, at 0.125 ML coverage, the heat
of adsorption of benzene in the gas phase is computed to be −102.34
kJ/mol. At 0.1 ML coverage, the gas-phase heat of adsorption becomes
−130.14 kJ/mol. The entropy loss of an adsorbed molecule can
also be calculated utilizing Campbell’s expressions,[80] ΔSads = −0.3Sgas – 3.3R = −0.11 kJ/(mol·K),
where the standard entropy of gas-phase benzene at 298 K is Sgas = −269.01 J/(mol·K).[81] This leads to a free energy of benzene adsorption
(assuming 0.125 ML coverage) in the gas phase of ΔGadsg = ΔHads – TΔSads = −70.12 kJ/mol. At 0.1 ML coverage,
the adsorption free energy is computed to be −97.91 kJ/mol.
Finally, we can employ eq to compute the solvent effect on the adsorption free energy
of benzene at 0.125 ML coverageAt 0.1 ML coverage, this becomesUsing our QM/MM-FEP scheme, we computed the
solvent effect on the adsorption free energy of benzene at 298 K to
be 0.82 ± 0.06 eV, which is again in very good agreement with
the aforementioned experimental prediction. We note that we used the
TIP4P water model[82] for benzene calculations
and the TIP3P water model[83] for phenol
calculations. Given that both water models generally predict very
similar results for biological systems, it is instructive to observe
that also in our simulations, good agreements with the experiment
are observed at room temperature independent of the specific water
model (that admittedly use an identical water geometry).
Aqueous-Phase Effect across Adsorbates and Metals
To
elucidate the significance of these large, computed and measured,
solvation effects for the Pt–phenol system for various other
catalytic processes, we computed the aqueous solvation effect on the
adsorption free energies (ΔΔGAdsorbategas→liq = ΔGAdsorbateg–l – ΔGAdsorbategas) of four different adsorbates, ethylene glycol (EG), carbon monoxide
(CO), benzene, and phenol (Ph), over the (111) surface facet of Cu
and Pt. In addition to our QM/MM-FEP calculations, we also used two
different well-known implicit solvation methods, iSMS[84] and VASPsol[85,86] (see Table ). Positive solvent effects on the adsorption
free energies indicate that liquid water destabilizes the adsorbate.
In this regard, the calculations at 298 K indicate that an aqueous
phase destabilizes all adsorbed species and that the impact is most
pronounced for phenol and benzene and smallest for CO, irrespective
of the metal surface (ΔΔGPhgas→liq ≈
ΔΔGBenzenegas→liq > ΔΔGCOgas→liq). We attribute the destabilization of the adsorbates on the surface
primarily to the solvent cavity formation energy and the desire of
water molecules to adsorb on a metal surface.
Table 1
Aqueous-Phase Effect on the Free Energy
of Low Coverage Adsorption (ΔΔGAdsorbategas→liq = ΔGAdsorbateg–l – ΔGAdsorbategas) in eV for Ethylene Glycol over Cu(111) and Pt(111) at 423 K, for
CO on Cu(111) and Pt(111) at 298 K, for Phenol over Cu(111) and Pt(111)
at 298 K, and for Benzene over Pt(111) at 298 Ka
ΔΔGAdsorbategas→liq
adsorbate/surface/T (K)
ΔGAdsorbategas
ΔGAdsorbateg–l,QM/MM-FEP
QM/MM-FEP
iSMS
VASPsol
ethylene glycol/Cu(111)/423
0.45
0.59 ± 0.01
0.14 ± 0.01
0.02
–0.15
ethylene glycol/Pt(111)/423
0.35
0.80 ± 0.02
0.45 ± 0.02
–0.19
–0.21
carbon monoxide/Cu(111)/298
–0.22
0.07 ± 0.01
0.29 ± 0.01
–0.03
–0.02
carbon monoxide/Pt(111)/298
–1.24
–0.89 ± 0.03
0.35 ± 0.03
0.01
–0.05
phenol/Cu(111)/298
–0.59
0.26 ± 0.01
0.85 ± 0.01
–0.19
–0.22
phenol/Pt(111)/298
–1.61
–0.83 ± 0.01
0.78 ± 0.02
–0.41
–0.47
benzene/Pt(111)/298
–1.55
–0.73 ± 0.06
0.82 ± 0.06
–0.42
–0.41
The aqueous phase results are based
on the proposed scheme in this work (QM/MM-FEP) and two implicit solvation
schemes: iSMS and VASPsol. For the QM/MM-FEP calculations, the 95%
confidence interval (based on limited water sampling and multiple
independent simulations) is also given.
The aqueous phase results are based
on the proposed scheme in this work (QM/MM-FEP) and two implicit solvation
schemes: iSMS and VASPsol. For the QM/MM-FEP calculations, the 95%
confidence interval (based on limited water sampling and multiple
independent simulations) is also given.Furthermore, the metal identity also plays a key role
in the solvation
effect, primarily through an indirect influence of the solvent environment
on the electronic structure of the metal atoms that in turn affects
the stability of the adsorbed species.[25] To elucidate the root cause for the different solvent effects across
the metals and the adsorbates, we developed a linear model for describing
the variability of the solvation free energy of adsorption (s is the standard deviation
and the bar sign shows mean value) in which f1 and f2 are the number of hydrogen
bonds (H bond) between the adsorbate and water molecules (we employed
a geometric definition in which a hydrogen bond exists if the distance
between the donor oxygen (Od) and the acceptor oxygen (Oa), ROO, is less than 3.2 Å and the angle ∠HOdOa is smaller than 20°; see Figure S13) and number of surface sites occupied by the adsorbate
(#Site), respectively (see Table S6). Based
on the best fit parameters (α1 = −0.44, α2 = 0.86), we conclude that different solvent effects arise
primarily from the size of the molecule and partially from the different
H-bonding between the adsorbate and water molecules. We note that
we also tested the net charge on the adsorbate, number of waters displaced
by the adsorbate, and gas-phase adsorption energy as possible descriptors,
but we found the best fit using the H-bond and #Site. The number of
displaced water molecules has previously been proposed as a meaningful
descriptor,[22] and it is related to the
size of the molecule or the #Site descriptor. We show in Table S7 the number of displaced waters by adsorption
of CO, phenol, and benzene over Pt(111) at 298 K, 1.88 ± 0.71,
5.46 ± 0.97, and 4.43 ± 0.49, respectively, which indicates
a correlation of the number of displaced water molecules and the destabilization
in adsorption free energies in solution. Possibly, the correlation
with the number of displaced water molecules is worse than the #Site
descriptor because of the larger uncertainties in our predicted number
of displaced water molecules.
Analysis of the Specific Contributions to the Solvation Free
Energy of Adsorption
Figure illustrates the free-energy profiles of the aqueous
solvent effect on the desorption of the various adsorbates. The profiles
are comprised of five subsections: Iopt,0-to-I, I-to-II
(remove electrostatic potential), II-to-III (electrostatic embedding),
III-to-IV (remove Lennard-Jones potential), and IV–IVopt (To OPT site in gas), whose individual values are listed in Tables and S5.All numbers contain a 95% confidence
interval based on limited water sampling obtained by performing multiple
independent simulations.
Iopt,0-to-I
This includes steps Iopt,0-to-Iopt and Iopt-to-I. The former depends
on how much the adsorbate distorts the coordinates of the surface
metal atoms upon gas-phase adsorption. It means this contribution
is larger for adsorbates that bind to the surface more strongly. The
contribution of step Iopt-to-I is often very small since
the gas and liquid optimized coordinates are often similar. For EG,
CO, benzene, and phenol on Pt(111), the solvent effect of this contribution
is essentially zero (within the error bars) for all species.
Classical Electrostatic Contribution to the Solvent Effect (I-to-II)
Removal of the classical electrostatic interactions between the
adsorbate and the liquid water molecules generally increases the total
free energy of the system, i.e., the classical electrostatic interactions
stabilize all adsorbed species. As expected, this effect is most dominant
for ethylene glycol, somewhat smaller for phenol, and least relevant
for CO, which is attributed to the fact that attractive forces between
charged species decrease the energy of the system, while repulsive
forces between charged species have the opposite effect. In this context,
perturbing charges of the adsorbate atoms from their original magnitude
to zero decreases the attractive forces between the adsorbate and
the water molecules and in turn increases the energy of the total
system.
Nonclassical Electrostatic Effects due to Changes in Polarization
by the Solvent (II-to-III)
As described above, removal of
the nonclassical electrostatic contribution of the water molecules
changing the electronic structure of the quantum system usually decreases
the free energy of the system in the desorption process shown in Figures and 2, increasing the adsorbate stabilization from the classical
electrostatic contributions.
Lennard-Jones Contribution to the Solvent Effect (III-to-IV)
Removing the LJ interactions between the adsorbed species and the
water molecules generally decreases the free energy of the system
as shown in Table and Figure . Slow
removal of the LJ interaction energy leads to a reduction of the water
cavity for the adsorbates. Cavity formation is generally an endergonic
process and given that any adsorbate requires a similar-sized water
cavity on any metal surface, we found this LJ removal contribution
to be almost independent of the metal surface (see Table ). This again explains why larger
adsorbates that require larger water cavities are often also more
destabilized on a metal surface.
Transition of Metal–Cluster Coordinates (IV–IVopt) Contribution to the Solvent Effect
This contribution
is significant for adsorption of molecules that bind strongly to the
surface in the gas phase and thus distort the coordinates of the surface
metal atoms upon adsorption. For EG, CO, benzene, and phenol on Pt(111),
the zero-point corrected adsorption energies, −0.35, −1.73,
−2.23, and −2.29 eV, respectively, correlate with this
contribution to the overall solvent effect on adsorption of 0.14,
0.16, 0.43, and 0.45 eV, respectively. We note that although the magnitude
of this contribution is similar to that of Iopt,0-to-Iopt, both their physical meaning and computations involved
are different. This transition occurs in the presence of water and
requires FEP steps, while the Iopt,0-to-Iopt contribution is only the difference between the self-consistent
field (SCF) energy of the gas-phase optimized free site (metal slab)
and the single-point SCF energy of the metal slab, which is obtained
by removing the adsorbate from the optimized metal–adsorbate
slab.
Implicit (iSMS and VASPsol) vs Explicit (QM/MM-FEP) Solvation
Models
Finally, we compare the results of the solvent effect
on the adsorption free energies of EG, CO, benzene, and phenol over
Pt(111) and Cu(111) computed with our QM/MM-FEP scheme against two
different implicit solvation schemes: VASPsol and our iSMS methodology. Table shows that both implicit
solvation methods fail to capture the true solvent effect, probably
because they underestimate the endergonic cavity formation energy.
In contrast, our explicit solvation scheme agrees quite well with
experimental data probably because the metal–water force field
is specifically optimized for this free-energy contribution.[87] Interestingly, both implicit solvation schemes
predict similar solvation free energies at 298 K, the temperature
for which the VASPsol parameters have been optimized. While iSMS permits
a straightforward change in the system temperature, we could only
adjust the dielectric constant for water with temperature in VASPsol
and otherwise used the default VASPsol parameters. Thus, at 423 K,
the solvation free-energy predictions deviate significantly between
the two implicit solvation methods, and iSMS predicts an endergonic
solvent effect of 0.02 eV for EG adsorption on Cu(111) at 423 K, which
agrees at least qualitatively with the value of 0.14 ± 0.01 eV
predicted using our QM/MM scheme. To improve implicit solvation models
for metallic surface systems, we recommend focusing on the cavity
formation energy description.
Enthalpic and Entropic Contributions: Van’t Hoff Plots
To compute the enthalpic and entropic contributions to the solvent
effect on the adsorption free energies, we repeated our explicit solvation
calculations (QM/MM-FEP) for CO and phenol on Pt(111) at five different
temperatures within the temperature interval of 285–353 K and
constructed van’t Hoff plots shown in Figure . The results indicate that the enthalpic
and entropic contributions to the solvation free energy of adsorption
are comparable for phenol and that phenol adsorption on Pt(111) in
liquid water is destabilized both enthalpically and entropically (ΔΔHPhgas→liq = 0.45 ± 0.10 eV, −TΔΔSPhgas→liq@298 K = 0.33 ± 0.08 eV).
For CO adsorption, our error bars for the free energy of solvation
are too large to unambiguously determine the enthalpic and entropic
contributions with a van’t Hoff plot (ΔΔHCOgas→liq = 0.13 ± 0.15 eV, −TΔΔSCOgas→liq@298 K = 0.22 ± 0.15 eV). Still, it appears that the entropic
solvation effect is not negligible relative to the enthalpic contribution.
Heenen et al.[88] also investigated the aqueous-phase
CO adsorption over Pt(111) using AIMD simulations and reported ΔΔHCOgas→liq = −0.15 ± 0.12 eV. In another study, Bodenschatz et
al.[89] investigated the aqueous-phase CO
adsorption over Pt(111) surface using DFT and MD simulations and reported
ΔΔHCOgas→liq = −0.01 ± 0.09 eV.
Although the enthalpic contribution in CO adsorption in these two
studies is negative, while ours is positive, we emphasize that the
error bars in all of these simulations are too large to conclusively
determine the sign of the solvation effect on the enthalpy. Here,
we add that AIMD-based methods have significant uncertainties originating
from the limited configuration space sampling that are difficult to
estimate.
Figure 4
Temperature dependence of the aqueous-phase effect on the free
energy of low coverage adsorption of phenol and carbon monoxide over
a Pt(111) surface (ΔΔG = ΔΔGAdsorbategas→liq(θAdsorbate = 0)). The error
bars indicate 95% confidence intervals based on limited water sampling
and multiple (three) independent simulations.
Temperature dependence of the aqueous-phase effect on the free
energy of low coverage adsorption of phenol and carbon monoxide over
a Pt(111) surface (ΔΔG = ΔΔGAdsorbategas→liq(θAdsorbate = 0)). The error
bars indicate 95% confidence intervals based on limited water sampling
and multiple (three) independent simulations.
Phenol on Pt(111): Experimental vs Computational
Singh
et al.[22,24,71] recently also
studied adsorption of aqueous phenol at four different temperatures
(283, 288, 298, 314 K) to acquire experimental enthalpic and entropic
solvation contributions. We also fitted eq to their measured data (see Figures and S10–S12) and Table shows
the extracted ΔΔGPhgas→liq(θPh = 0) values at different temperatures. Overall, the agreement between
the computed (QM/MM-FEP) and experimental solvation free energies
of adsorption is good for the low coverage adsorption free energy
of phenol on Pt(111) at all temperatures. However, the experimental
solvation enthalpies and entropies of phenol adsorption in water disagree
with our computational data. Large enthalpic solvation effects are
predicted that are reduced by entropic contributions (ΔΔHPhgas→liq = 1.83 eV, ΔΔSPhgas→liq = 2.30 meV/K).
In our opinion, the solvation effect on the enthalpy and entropy of
adsorption is too large and an artifact of the small experimental
temperature interval in the van’t Hoff plot together with sizable
errors of ∼0.1 eV of the experimental solvation effects on
the Gibbs free energies of adsorption. Specifically, in the small
temperature interval from 283 to 314 K, the experimentally extracted
ΔΔGPhgas→liq value differs by only 0.08 eV
(see Table ), which
is smaller than the error bar of ∼0.1 eV, making it impractical
to even predict the sign of the solvation effect on the entropy of
adsorption. A consequence of this small temperature window in the
van’t Hoff plot is that the apparent experimentally extracted
enthalpy of adsorption from the gas phase to an adsorbed phenol in
liquid water (ΔHads,Phg–l) is barely exothermic, while
the entropy of adsorption (ΔSads,Phg–l) appears to increase.
In contrast, when using either DFT computed or experimentally measured
gas-phase enthalpies and entropies of adsorption together with our
QM/MM predicted enthalpies and entropies of solvation, we predict
sizable phenol enthalpies of adsorption of −1.62 to −1.86
eV and (as expected) negative entropies of adsorption of −2.37
to −3.42 meV/K.
Table 3
Temperature Dependence of the Aqueous-Phase
Effect on Free Energy (ΔΔGPhgas→liq),
Enthalpy (ΔΔHPhgas→liq), and Entropy (ΔΔSPhgas→liq) of Low Coverage Phenol Adsorption on the Pt(111) Catalyst Surfacea
T (K)
ΔΔGPhgas→liq (eV)
ΔΔHPhgas→liq (eV)
ΔΔSPhgas→liq (meV/K)
ΔHads,Phg–l (eV)
ΔSads,Phg–l (meV/K)
experimental
283
1.16 (1.44)
1.83 (1.82)
2.30 (1.28)
–0.25
(−0.26)
1.03 (0.01)
288
1.15 (1.43)
298
1.14 (1.44)
314
1.08 (1.39)
QM/MM-FEP
285
0.77 ± 0.01
0.45 ± 0.10
–1.10 ± 0.28
–1.86 ± 0.10 [−1.62 ± 0.10]
–3.42 ± 0.28 [−2.37 ± 0.28]
298
0.78 ± 0.02
315
0.80 ± 0.01
335
0.82 ± 0.02
353
0.85 ± 0.01
Experimental energy and entropy
data obtained by fitting eq (n = 5 and γH = 10; the
numbers in parentheses in the experimental row obtained using n = 5 and γH = 0.1 in fitting) to the raw
adsorption data from Singh et al.[22,23,71] The γH parameter represents the
hydrogen surface coverage relative to the free site coverage (γH = 0 shows zero H coverage approximation and γH = 10 means the H coverage is 10 times as large as the free site
coverage), n represents the number of sites a phenol
molecule occupies when adsorbed on the surface. Computational data
obtained by the QM/MM-FEP scheme proposed in this study. ΔHads,Phg–l and ΔSads,Phg–l are the enthalpy and entropy of phenol
adsorption in liquid water from its free state in the gas phase (Ph(g)+ n*(liq) ↔ Ph* (liq)),
respectively (ΔΔZPhgas→liq = ΔZPhg–l – ΔZPhgas, Z ≡ G, H, S). Numbers in bracket [ ]
in the QM/MM-FEP row were calculated using the experimental gas-phase
enthalpy and entropy of phenol adsorption on the Pt(111) catalyst
surface (ΔHPhgas = −200 kJ/mol,[74] ΔSPhgas = −14.7R[75]).
Experimental energy and entropy
data obtained by fitting eq (n = 5 and γH = 10; the
numbers in parentheses in the experimental row obtained using n = 5 and γH = 0.1 in fitting) to the raw
adsorption data from Singh et al.[22,23,71] The γH parameter represents the
hydrogen surface coverage relative to the free site coverage (γH = 0 shows zero H coverage approximation and γH = 10 means the H coverage is 10 times as large as the free site
coverage), n represents the number of sites a phenol
molecule occupies when adsorbed on the surface. Computational data
obtained by the QM/MM-FEP scheme proposed in this study. ΔHads,Phg–l and ΔSads,Phg–l are the enthalpy and entropy of phenol
adsorption in liquid water from its free state in the gas phase (Ph(g)+ n*(liq) ↔ Ph* (liq)),
respectively (ΔΔZPhgas→liq = ΔZPhg–l – ΔZPhgas, Z ≡ G, H, S). Numbers in bracket [ ]
in the QM/MM-FEP row were calculated using the experimental gas-phase
enthalpy and entropy of phenol adsorption on the Pt(111) catalyst
surface (ΔHPhgas = −200 kJ/mol,[74] ΔSPhgas = −14.7R[75]).
Conclusions
In this study, we have developed an explicit
solvation scheme,
based on hybrid QM/MM-FEP calculations, for quantifying solvation
effects on adsorption free energies for heterogeneous catalysis applications.
To numerically verify the proposed scheme, the solvent effect on the
activation free energy of O–H bond cleavage in EG over Cu(111)
has been computed through two adsorption free energy of solvation
calculations (reactant and transition states) and by performing conventional
eSMS calculations for surface reactions. Using the adsorption calculations,
we predict a solvation effect on the activation free energy of −0.62
± 0.03 eV, which agrees very well with our conventional eSMS
calculations (ΔΔGliq‡ = −0.56 ±
0.04 eV) and which highlights that the sampling error is similarly
small in the new scheme that has the added benefit of being able to
describe adsorption events.Next, we computed solvation free
energies of phenol and benzene
adsorption on Pt(111) and reanalyzed experimental data for solvation
free energies of phenol and benzene adsorption on this surface using
multiple adsorption isotherm models. Our explicit solvation calculations
predict an endergonic solvation free energy of 0.78 ± 0.02 eV
for phenol and 0.82 ± 0.06 eV for benzene, which are in very
good agreement with measurements to within the experimental and force
field uncertainties. Implicit solvation schemes such as VASPsol and
iSMS fail to capture the true solvent effect, probably because they
underestimate the endergonic cavity formation energy. To elucidate
the significance of these large, computed and measured, solvation
effects for the Pt–phenol and the Pt–benzene system
for various other catalytic processes, we computed the aqueous solvation
effect on the adsorption free energies of carbon monoxide, ethylene
glycol, and phenol over the Pt(111) and Cu(111) surfaces. Irrespective
of the metal surface, the water environment destabilized all three
adsorbed species with the largest impact on phenol and benzene and
smallest for CO (ΔΔGPhgas→liq ≈ ΔΔGBenzenegas→liq > ΔΔGCOgas→liq),
which is attributed primarily to the size of the molecule (number
of sites occupied) and the corresponding solvent cavity formation
and partially to different H-bonding between the adsorbate and water
molecules.
Methods
To describe the potential energy surface of
a metal–adsorbate
system during desorption with a hybrid QM/MM scheme, adsorbate, active
site, and its immediate metal neighbors are treated from first principles
(called QM system/subsystem in this study), while the bulk of the
solvent molecules and the “nonreactive” part of the
simulation system (metal atoms far away from the adsorbate) are described
by classical force fields (called MM system/subsystem in this study).
Here, we explain why we need to use different software in our QM/MM
scheme. First, the interaction between metal surfaces and adsorbates
in vacuum can be described well by periodic planewave DFT calculations
(e.g., VASP[60,61]). Electrons flow freely in metals,
which leads to long-range interactions that can typically not be described
by cluster model DFT calculations. In the presence of liquid water
molecules, the metal–adsorbate system gets polarized by the
solvent. Fortunately, this polarization is short-ranged and thus,
it can be described by periodic electrostatic embedded cluster method
(PEECM[65]) calculations,[20] as implemented in the TURBOMOLE[62−64] program package,
of a small metal-cluster–adsorbate system.[62−64] To avoid overcounting
of interactions, another nonperiodic DFT cluster calculation has to
be performed in the absence of the (periodic) solvent with the TURBOMOLE
program package. In principle, the polarization of QM atoms by the
water point charges can also be computed with periodic DFT codes (although
not with VASP); however, due to the long-range water–water
interactions, very large metal slabs containing thousands of metal
atoms would be necessary, which is very slow and therefore not done
here. Next, to explain the classical solvent interactions (electrostatic
and van der Waals) within the solvent and with the QM subsystem, classical
molecular dynamics simulations must be performed (e.g., DL_POLY[90]). The following sections detail the calculation
methods employed in each of the aforementioned program packages.
Planewave DFT Calculations
Gas-phase DFT calculations
were carried out employing periodic boundary conditions and using
the Vienna Ab Initio Simulation Package (VASP 5.4.4).[60,61] The frozen-core, all-electron projector augmented-wave (PAW)[91] method was utilized to avoid the singularities
of Kohn–Sham wavefunctions at the nuclear positions. The exchange-correlation
energy is calculated within the generalized gradient approximation
(GGA)[92] using the Perdew–Burke–Ernzerhof
(PBE)[93,94] functional. For phenol adsorption, we used
Grimme’s DFT-D3 methodology[95] as
implemented in VASP to describe the van der Waals interactions. Brillouin
zone integrations have been performed with a 4 × 4 × 1 Monkhorst–Pack[96]k-point grid, and electronic
wavefunctions at each k-point were expanded using
a discrete planewave basis set with kinetic energies limited to 400
eV. For phenol adsorption, we increased the energy cutoff to 450 eV
although for all practical purposes, energies are already converged
with a cutoff of 400 eV. Fractional occupancies of bands were allowed
within a window of 0.10 eV using a first-order Methfessel–Paxton[97] smearing method, which permitted us to calculate
the entropic contributions due to accurate smearing. The modified
version of the Makov–Payne[98] method
with Harris corrections was applied to the stress tensor and forces
to calculate dipole and quadrupole corrections (along the surface
normal) to the total energy. Using the supercell approach, a 4 ×
4 unit cell with four layers of metal atoms, in which the bottom two
layers were fixed, while the top two layers were relaxed, has been
constructed employing a 15 Å vacuum on top of the surface, which
restricted the interaction between the periodic images along the surface
normal. Self-consistent field (SCF) calculations were converged to
1.0 × 10–7 eV. A force criterion of 0.02 eV
Å–1 was used on relaxed atoms for geometry
optimizations. The transition-state structure of the O–H bond
cleavage of ethylene glycol (EG) over a Cu(111) surface model was
located using a combination of climbing-image nudged elastic band[99,100] and dimer[101,102] methods. Finally, the minima
and the first-order saddle points were validated by computing the
Hessian matrix and vibrational spectra.
Periodic Electrostatic Embedded Cluster and Nonperiodic Cluster
Calculations
Cluster model DFT calculations in a water point
charge field and in vacuum have been carried out using the TURBOMOLE
7.2 program package.[62−64] We used a cluster model consisting of two layers
with a total number of 51 metal atoms. Convergence of the total QM/MM
system energy with respect to the lateral size and depth of the cluster
geometry can be found elsewhere.[59] To represent
the adsorbate atoms and the metal atoms, an improved version of the
default TURBOMOLE basis sets (def-bases) with split valence and polarization
functions (def2-SVP)[103,104] was used. Pt atoms were represented
using scalar relativistic effective core potentials (ECPs) in conjunction
with split valence basis sets augmented by polarization functions.[104,105] Exchange-correlation effects were calculated using the PBE functional[93,94] (for phenol adsorption, Grimme’s DFT-D3 methodology[95] was used). Finally, the RI-J approximation with
auxiliary basis sets was used to approximate the Coulomb integrals.[106,107] Single-point energy calculations were performed with an SCF energy
convergence criterion of 1.0 × 10–7 Hartree,
and a Gauss–Chebyshev type spherical grid, m4, was employed
to perform the numerical integrations.[63]
Molecular Dynamics (MD) Simulations
The DL_POLY 4.03
molecular simulation program package[90] was
utilized for the MD simulations. Using the supercell approach, the
initial 4 × 4 unit cell for each clean surface metal was augmented
laterally to a 16 × 20 surface with further vacuum added in the Z-direction resulting in a simulation box containing 1280
metal atoms. As a result, a simulation box size of 44.98 Å ×
48.69 Å × 49.01 Å for a Pt(111) surface and 41.04 Å
× 44.43 Å × 49.01 Å for a Cu(111) surface were
achieved. The QM cluster atoms were then substituted into the constructed
surface. The simulation box height was selected based on the work
from Behler et al.[108] who found that simulations
of metal–water interfaces should contain a water layer of ∼40
Å height. Subsequently, the experimental saturated liquid water
density of ∼1.0 g/cm3 at 298 K for CO, benzene,
and phenol adsorption calculations on Pt(111) and Cu(111) surfaces
and of ∼0.92 g/cm3 at 423 K for O–H bond
cleavage’s calculations of ethylene glycol (EG) on Cu(111)
as well as EG adsorption on Pt(111) were achieved by packing the simulation
box of the Pt(111) and Cu(111) surfaces with ∼3000 and ∼2400
water molecules, respectively. All metal and adsorbate atoms were
kept fixed, while the geometry of water molecules was constricted
to that of TIP3P[83] geometry with the RATTLE
algorithm,[109] a velocity version of the
SHAKE algorithm,[110] in conjunction with
the velocity Verlet (VV) integrator[111] to
solve Newton’s equations of motion. The force field parameters
of liquid water were obtained from the TIP3P model (we used the TIP4P/2005
water model[82] for the benzene calculations
as we are currently in the process of studying solvation effects on
benzene adsorption at elevated temperatures where the TIP4P/2005 water
model is better at reproducing the water phase behavior—at
room temperature we do not expect significant deviations in simulation
results between water models as the metal–water interaction
potential has been developed independent of the specific water model
and both water models are commonly used for the simulation of room-temperature
phenomena). The Lennard-Jones parameters were obtained from the OPLS
force field[112−114] for EG, benzene, and phenol and from Straub
et al.[115] for CO. In addition to the OPLS
parameters, the Lennard-Jones parameters from the combined B3LYP/6-31_G*/AMBER
Potential[116] were used for the hydrogen
atoms of EG. Lennard-Jones parameters for hydrogen atoms are important
in QM/MM optimizations that permit hydrogen atoms to approach water
molecules and leave the protective environment of a neighboring carbon
or oxygen atom. The metal–water interaction was represented
by a Lennard-Jones metal potential.[87] The
LJ cross-term of the intermolecular parameters are calculated by Lorentz–Berthelot
mixing rules through equations and . All Lennard-Jones parameters are included
in Table S1. For O–H bond breaking
of EG on the Cu(111) surface, and EG adsorption on the Pt(111) surface,
the charges for the QM atoms were estimated using the natural population
analysis (NPA),[66] while for CO, benzene,
and phenol adsorptions on the Pt(111) and Cu(111) surfaces, the DDEC6[67] (a refinement of the density-derived electrostatic
and chemical (DDEC) approach) charge model was used (to compare the
performance of NPA and DDEC6 in our scheme, we also repeated the calculations
of CO adsorption on Pt(111) with the NPA charge model. See page S3 of the Supporting Information for a discussion
on the selection of the charge model).To describe the interaction
of the TIP3P (TIP4P/2005 for the benzene calculations) water point
charges with the quantum chemically described cluster model, we employed
the periodic electrostatic embedded cluster method (PEECM)[65] as implemented in TURBOMOLE. Simulations were
carried out in a canonical ensemble (NVT) with the Nosé–Hoover
thermostat[117,118] with a 1 ps relaxation time
constant. We selected the NVT ensemble over the NPT ensemble since
the system is asymmetric and the dimensions in two directions are
constant and controlled by the metal slab. We note that all ensembles
lead to the same results in the limit of large systems, and we previously
showed that our simulation system is sufficiently large for obtaining
converged results.[44] Electrostatic interactions
were accounted for using the Smoothed Particle Mesh Ewald (SPME) method[119] with automatic parameter optimization with
default SPME precision. A 12 Å cutoff radius was adopted for
the van der Waals interactions and the transition between short- and
long-range electrostatic interactions. If not specified differently,
all systems were equilibrated for 250 ps and sampled for 1000 ps (1
ns) using a 1 fs timestep to obtain 1000 MM conformations, which are
1 ps apart, for each experiment. To optimize structures in an aqueous-phase
environment, we utilized the fixed-size ensemble approximation with
5000 MM conformations (5 ns sampling) recorded every 1 ps.