Literature DB >> 36173581

Targeted Manipulation of Histone Modification in Medaka Embryos.

Hiroto S Fukushima1, Hiroyuki Takeda1, Ryohei Nakamura2.   

Abstract

Recent development of targeted manipulation of histone modification enables us to experimentally and directly test the functional relevance of histone modifications accumulated at specific genomic regions. In particular, dCas9 epigenome editing has been widely used for site-specific manipulation of epigenetic modification. Here, we describe how to apply dCas9 epigenome editing in fish (medaka, Oryzias latipes) embryos and how to analyze induced changes in histone modification.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  ChIP; Chromatin; Epigenome editing; Fish; H3K27me3; Histone modification; In vivo; Medaka

Mesh：

Substances：

Year:  2023        PMID： 36173581     DOI： 10.1007/978-1-0716-2724-2_20

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  29 in total

Review 1.  CRISPR technologies for precise epigenome editing.

Authors:  Muneaki Nakamura; Yuchen Gao; Antonia A Dominguez; Lei S Qi
Journal:  Nat Cell Biol       Date:  2021-01-08       Impact factor: 28.824

2.  Locus-specific epigenetic remodeling controls addiction- and depression-related behaviors.

Authors:  Elizabeth A Heller; Hannah M Cates; Catherine J Peña; Haosheng Sun; Ningyi Shao; Jian Feng; Sam A Golden; James P Herman; Jessica J Walsh; Michelle Mazei-Robison; Deveroux Ferguson; Scott Knight; Mark A Gerber; Christian Nievera; Ming-Hu Han; Scott J Russo; Carol S Tamminga; Rachael L Neve; Li Shen; H Steve Zhang; Feng Zhang; Eric J Nestler
Journal:  Nat Neurosci       Date:  2014-10-27       Impact factor: 24.884

3.  Cell-Type-Specific Epigenetic Editing at the Fosb Gene Controls Susceptibility to Social Defeat Stress.

Authors:  Peter J Hamilton; Dominika J Burek; Sonia I Lombroso; Rachael L Neve; Alfred J Robison; Eric J Nestler; Elizabeth A Heller
Journal:  Neuropsychopharmacology       Date:  2017-05-02       Impact factor: 7.853

4.  Epigenetic editing of the Dlg4/PSD95 gene improves cognition in aged and Alzheimer's disease mice.

Authors:  Fernando J Bustos; Estibaliz Ampuero; Nur Jury; Rodrigo Aguilar; Fahimeh Falahi; Jorge Toledo; Juan Ahumada; Jaclyn Lata; Paula Cubillos; Berta Henríquez; Miguel V Guerra; Jimmy Stehberg; Rachael L Neve; Nibaldo C Inestrosa; Ursula Wyneken; Marco Fuenzalida; Steffen Härtel; Miguel Sena-Esteves; Lorena Varela-Nallar; Marianne G Rots; Martin Montecino; Brigitte van Zundert
Journal:  Brain       Date:  2017-12-01       Impact factor: 13.501

5.  Cell-Type-Specific Role of ΔFosB in Nucleus Accumbens In Modulating Intermale Aggression.

Authors:  Hossein Aleyasin; Meghan E Flanigan; Sam A Golden; Aki Takahashi; Caroline Menard; Madeline L Pfau; Jacob Multer; Jacqueline Pina; Kathryn A McCabe; Naemal Bhatti; Georgia E Hodes; Mitra Heshmati; Rachael L Neve; Eric J Nestler; Elizabeth A Heller; Scott J Russo
Journal:  J Neurosci       Date:  2018-06-11       Impact factor: 6.167

6.  Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.

Authors:  Isaac B Hilton; Anthony M D'Ippolito; Christopher M Vockley; Pratiksha I Thakore; Gregory E Crawford; Timothy E Reddy; Charles A Gersbach
Journal:  Nat Biotechnol       Date:  2015-04-06       Impact factor: 54.908

7.  Locus-specific editing of histone modifications at endogenous enhancers.

Authors:  Eric M Mendenhall; Kaylyn E Williamson; Deepak Reyon; James Y Zou; Oren Ram; J Keith Joung; Bradley E Bernstein
Journal:  Nat Biotechnol       Date:  2013-09-08       Impact factor: 54.908

8.  Targeted in vivo epigenome editing of H3K27me3.

Authors:  Hiroto S Fukushima; Hiroyuki Takeda; Ryohei Nakamura
Journal:  Epigenetics Chromatin       Date:  2019-03-13       Impact factor: 4.954

9.  Efficient genome editing in zebrafish using a CRISPR-Cas system.

Authors:  Woong Y Hwang; Yanfang Fu; Deepak Reyon; Morgan L Maeder; Shengdar Q Tsai; Jeffry D Sander; Randall T Peterson; J-R Joanna Yeh; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

10.  Optical control of mammalian endogenous transcription and epigenetic states.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro Trevino; Patrick D Hsu; Matthias Heidenreich; Le Cong; Randall J Platt; David A Scott; George M Church; Feng Zhang
Journal:  Nature       Date:  2013-08-23       Impact factor: 49.962
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