Upon coordination to metal centers, tetradentate ligands based on the 6,6'-bis(2″-aminopyridyl)-2,2'-bipyridine (bapbpy) structure form helical chiral complexes due to the steric clash between the terminal pyridines of the ligand. For octahedral ruthenium(II) complexes, the two additional axial ligands bound to the metal center, when different, generate diastereotopic aromatic protons that can be distinguished by NMR. Based on these geometrical features, the inversion barrier of helical [RuII(L)(RR'SO)Cl]+ complexes, where L is a sterically hindered bapbpy derivative and RR'SO is a chiral or achiral sulfoxide ligand, was studied by variable-temperature 1H NMR. The coalescence energies for the inversion of the helical chirality of [Ru(bapbpy)(DMSO)(Cl)]Cl and [Ru(bapbpy)(MTSO)(Cl)]Cl (where MTSO is (R)-methyl p-tolylsulfoxide) were found to be 43 and 44 kJ/mol, respectively. By contrast, in [Ru(biqbpy)(DMSO)(Cl)]Cl (biqbpy = 6,6'-bis(aminoquinolyl)-2,2'-bipyridine), increased strain caused by the larger terminal quinoline groups resulted in a coalescence temperature higher than 376 K, which pointed to an absence of helical chirality inversion at room temperature. Further increasing the steric strain by introducing methoxy groups ortho to the nitrogen atoms of the terminal pyridyl groups in bapbpy resulted in the serendipitous discovery of a ring-closing reaction that took place upon trying to make [Ru(OMe-bapbpy)(DMSO)Cl]+ (OMe-bapbpy = 6,6'-bis(6-methoxy-aminopyridyl)-2,2'-bipyridine). This reaction generated, in excellent yields, a chiral complex [Ru(L″)(DMSO)Cl]Cl, where L″ is an asymmetric tetrapyridyl macrocycle. This unexpected transformation appears to be specific to ruthenium(II) as macrocyclization did not occur upon coordination of the same ligand to palladium(II) or rhodium(III).
Upon coordination to metal centers, tetradentate ligands based on the 6,6'-bis(2″-aminopyridyl)-2,2'-bipyridine (bapbpy) structure form helical chiral complexes due to the steric clash between the terminal pyridines of the ligand. For octahedral ruthenium(II) complexes, the two additional axial ligands bound to the metal center, when different, generate diastereotopic aromatic protons that can be distinguished by NMR. Based on these geometrical features, the inversion barrier of helical [RuII(L)(RR'SO)Cl]+ complexes, where L is a sterically hindered bapbpy derivative and RR'SO is a chiral or achiral sulfoxide ligand, was studied by variable-temperature 1H NMR. The coalescence energies for the inversion of the helical chirality of [Ru(bapbpy)(DMSO)(Cl)]Cl and [Ru(bapbpy)(MTSO)(Cl)]Cl (where MTSO is (R)-methyl p-tolylsulfoxide) were found to be 43 and 44 kJ/mol, respectively. By contrast, in [Ru(biqbpy)(DMSO)(Cl)]Cl (biqbpy = 6,6'-bis(aminoquinolyl)-2,2'-bipyridine), increased strain caused by the larger terminal quinoline groups resulted in a coalescence temperature higher than 376 K, which pointed to an absence of helical chirality inversion at room temperature. Further increasing the steric strain by introducing methoxy groups ortho to the nitrogen atoms of the terminal pyridyl groups in bapbpy resulted in the serendipitous discovery of a ring-closing reaction that took place upon trying to make [Ru(OMe-bapbpy)(DMSO)Cl]+ (OMe-bapbpy = 6,6'-bis(6-methoxy-aminopyridyl)-2,2'-bipyridine). This reaction generated, in excellent yields, a chiral complex [Ru(L″)(DMSO)Cl]Cl, where L″ is an asymmetric tetrapyridyl macrocycle. This unexpected transformation appears to be specific to ruthenium(II) as macrocyclization did not occur upon coordination of the same ligand to palladium(II) or rhodium(III).
The interaction between inorganic compounds
and biomolecules such
as proteins or nucleic acids has been widely studied[1−7] since the discovery of the anticancer properties of cisplatin.[8,9] Especially, the interaction with DNA has gathered wide attention[10,11] as more and more platinum-based analogues of cisplatin have been
reported, with improved properties such as oxaliplatin or satraplatin.[12] One method to generate specific interaction
between inorganic compounds and DNA is to use chiral scaffolds. Octahedral
metal complexes have the potential to be chiral, and several synthetic
routes have been reported, where one enantiomer of an inorganic compound
is enriched or even a single enantiomer is selectively formed.[13,14] These chiral complexes offer improved characteristics regarding
DNA binding, such as higher DNA-binding constants,[15,16] increased luminescence quantum yields upon binding onto DNA, higher
degrees of DNA photocleavage,[17−19] or improved threading intercalation
into DNA.[20] One notable compound is [Ru(bpy)2(dppz)]2+, which was originally reported by the
group of Barton for its “light switch” properties. This
chiral complex is non-emissive in water but becomes luminescent upon
intercalation of the dppz moiety into double-stranded DNA.[21] Later work reported improved luminescence for
the delta enantiomer upon binding to mismatch DNA, while the lambda
enantiomer showed preference for abasic sites.[22]So far, most chiral complexes discussed in the bioinorganic
literature
relate to point chirality, where the stereogenic center is either
the metal atom itself and/or one of the carbon atoms of a ligand.
Other forms of chirality, however, exist. For example, helical chirality
offers a fascinating range of compounds known in organic chemistry
as helicenes; their properties have been reviewed comprehensively
elsewhere.[23,24] Helicenes consist of ortho-fused
aromatic rings that cannot adopt a flat planar conformation due to
the steric hindrance of the terminal rings; these molecules therefore
adopt a helical structure, which is inherently chiral and can exist
as two enantiomers noted P and M.[25] The
inversion barrier between these two forms rapidly increases upon extension
of the aromatic system with activation energies of 96.3 kJ/mol for
[5]helicine[26] and 151.5 kJ/mol for [6]helicine.[27] A recent trend in this field is the coordination
of helicene-containing ligands to metal centers, which has been shown
to alter the properties of the helicenes.[28−30] For example,
the coordination of helical ligands to iridium compounds resulted
in a light-green phosphorescence with unusually long lifetimes. Recently,
the group of Crassous reported the synthesis and structural characterization
of a range of helicene-like ligands coordinated to ruthenium, forming
metal complexes based on the [Ru(bpy)3]2+ scaffold
but with an extended π conjugation system.[31] The same group even reported the synthesis and crystal
structure of an enantio-enriched binuclear ruthenium complex linked
by a helical ligand containing two bpy-like moieties. Another type
of helical chiral metal complexes are those based on the non-chiral
6,6′-bis(2″-aminopyridyl)-2,2′-bipyridine ligand
(bapbpy).[32] Upon metal coordination, this
type of ligands can no longer adopt a flat conformation due to the
steric clash between its terminal pyridines, which imposes a helical
conformation to the tetrapyridyl structure (Figure ). Typically, single-crystal X-ray structures
of these helicenoid complexes show both helical enantiomers present
in the crystal lattice.[31] As we recently
found that bapbpy-based ruthenium[33,34] or platinum[35] complexes can interact with DNA and considering
that the ease at which chiral inversion of the helix occurs had remained
unknown up to now, we engaged in this work into determining the barrier
of inversion of the helical chirality of such molecules.
Figure 1
Coalescence
energies (ΔG⧧) for the inversion
of the helical chirality of [Ru(bapbpy)(DMSO)(Cl)]+.
Coalescence
energies (ΔG⧧) for the inversion
of the helical chirality of [Ru(bapbpy)(DMSO)(Cl)]+.Considering that the helicity of these complexes
is a direct consequence
of the steric strain between the terminal pyridyl groups of the bapbpy
ligand, we synthesized ruthenium(II) bapbpy-based derivatives with
various levels of steric strain on these terminal pyridines (Figure ) and studied the
rate of interconversion between the two helical enantiomers using
variable-temperature 1H NMR. We explored this helical inversion
both on chiral complexes of the type [Ru(L)(DMSO)Cl]Cl ([1]Cl and [2]Cl, with L = bapbpy or L = 6,6′-bis(aminoquinoline)-2,2′-bipyridine
= biqbpy, respectively), where DMSO is the non-chiral ligand dimethylsulfoxide,
and on their analogues [Ru(L)(MTSO)Cl]Cl ([3]Cl-[4]Cl with L = bapbpy and biqbpy, respectively) and [Ru(biqbpy)(EtOHPy)2](PF6)2 ([5](PF6)2), where MTSO and EtOHPy are the enantiomerically pure
chiral ligands (R)-methyl p-tolylsulfoxide
and (R)-(+)-α-methyl-4-pyridinemethanol, respectively.
In the latter cases, the enantiopure nature of the axial ligand(s)
generated diastereomers upon coordination to the helical chiral complexes
that could be distinguished by NMR. Finally, we report the serendipitous
discovery of a macrocyclization reaction taking place when the most
sterically hindered ligand of the series, L = 6,6′-bis(6-methoxy-aminopyridyl)-2,2′-bipyridine
(OMe-bapbpy), was coordinated to ruthenium(II).
Figure 2
Chemical structure of
the compounds used in the helical inversion 1H NMR study.
Chemical structure of
the compounds used in the helical inversion 1H NMR study.
Results
Synthesis
The known achiral tetradentate ligands bapbpy
and biqbpy were reacted with the precursor [Ru(DMSO)4Cl2] to form racemic mixtures of the chiral complexes [1]Cl and [2]Cl, respectively. This reaction was
achieved by a straightforward overnight reflux at 80 °C in ethanol
to afford the products in 68 and 96% yield, respectively. The DMSO
axial ligand was further substituted with the enantiomeric pure sulfoxide
ligand MTSO to afford mixtures of diastereoisomer complexes of compounds
[3]Cl and [4]Cl, respectively. To complete
our investigations on the chirality of these structures, we finally
substituted both axial ligands with chiral pyridine EtOHPy to afford
compound [5](PF6)2 as a mixture
of epimers (P,R,R and M,R,R) that
differ in only one stereo-center.Single crystals suitable for
X-ray structure determination for [3]PF6 and
[5](PF6)2 were obtained by vapor
diffusion of diethylether into a methanol solution containing the
metal compound (0.2 mg/mL), in the presence or in the absence, respectively,
of a drop of 55% HPF6 in water. The crystal structures
are shown in Figure and a selection of bond lengths and angles is reported in Table . Both structures
show the chiral helically distorted conformation of the tetradentate
ligand. The crystal lattice of [3]PF6 contained
both the (P,R) and (M,R) diastereomers and that of [5](PF6)2 contained both the (P,R,R) and (M,R,R) epimers (Figure S1). The N1N3N4N6 dihedral angle, which is one measure of the helical
distortion, was 9.9(6)° for [3]+ and
16.6(4)° for [5]2+. Clearly,
the extended aromatic system of the biqbpy ligand, compared to bapbpy,
resulted in an increase of in helical distortion of the ligand upon
coordination to ruthenium(II).
Figure 3
Displacement ellipsoid plots (50% probability
level) for [3]PF6 and [5](PF6)2 at 110(2) and 173(2) K, respectively. Counterions
and hydrogens
have been omitted for clarity.
Table 1
Selected Bond Distances (Å) and
Angles (°) Found in the Crystal Structures of [3]PF6, [5](PF6)2, [6]OTf, [7](OTf)·MeOH, and [8](OTf)2
compound
[3]+b
[5]2+c
[6]+b
[7]+
[8]2+b
M–N1
2.098(9)
2.146(8)
2.089(7)
2.123(9)
2.078(2)
M–N3
2.031(9)
2.023(8)
2.033(6)
2.027(10)
2.065(2)
M–N4
2.022(8)
2.020(8)
2.031(7)
2.012(9)
1.991(2)
M–N6
2.102(9)
2.180(8)
2.051(6)
2.089(11)
1.977(2)
M–S1
2.207(2)
2.214(2)
2.192(3)
M–Cl1
2.430(2)
2.421(2)
2.456(3)
C1–O2–C20
124.9(7)
127.1(10)
C5–N2–C6
135.5(9)
132.0(5)
134.9(7)
136.6(10)
130.3(3)
C15–N5–C16
130.3(3)
132.5(9)
127.8(7)
131.6(11)
132.5(3)
N1–M–N4
172.5(3)
165.3(3)
171.2(3)
168.6(4)
162.15(10)
N3–M–N6
165.1(3)
167.7(3)
169.8(3)
173.4(8)
165.34(10)
τ4a
0.1(6)
0.1(9)
0.1(3)
0.1(3)
0.2(3)
distortion
10.8(4)
16.6(4)
1.2(2)
1.4(0)
20.8(9)
The coordination angles N1–M1–N4
and N3–M1–N6 were used to calculate τ4.[39]
Consists of two crystallographically
independent formular units for the structure. The bond distance and
angles are given for molecule A.
Consists of four crystallographically
independent formular units for the structure. The bond distance and
angles are given for molecule A.
Displacement ellipsoid plots (50% probability
level) for [3]PF6 and [5](PF6)2 at 110(2) and 173(2) K, respectively. Counterions
and hydrogens
have been omitted for clarity.The coordination angles N1–M1–N4
and N3–M1–N6 were used to calculate τ4.[39]Consists of two crystallographically
independent formular units for the structure. The bond distance and
angles are given for molecule A.Consists of four crystallographically
independent formular units for the structure. The bond distance and
angles are given for molecule A.The room-temperature 1H NMR spectra of
the ruthenium
complexes already offer an intriguing insight into their chiral structure
and dynamics (Figure ). The helical chiral, racemic complex [1]Cl showed
only seven aromatic signals, indicating that on the NMR time scale,
this complex has an average plane of symmetry perpendicular to the
average plane of the babpbpy ligand. By contrast, upon substitution
of the non-chiral axial DMSO ligand with the chiral, enantiomerically
pure MTSO ligand, all aromatic signals assigned to the bapbpy ligand
were doubled in [3]Cl, which was consistent with the
formation of diastereotopic protons, while the two aromatic MTSO signals
indicate the presence of only one species. Overall, the doubling of
the babpy-based proton peaks in [3]+ can be
attributed to the loss of the plane of symmetry in the complex concomitant
with the substitution of the achiral sulfoxide DMSO with the chiral
MTSO. The fact that one single species is observed in the room-temperature 1H NMR spectrum of [3]Cl, while its crystal structure
contains both diastereoisomers, leads to the conclusion that the helicity
inversion due to the switching of the position of the terminal pyridines
is rapid on NMR time scales at room temperature, rendering the separation
of these diastereomers impossible.
Figure 4
1H NMR spectra of [1]+ and [3]+ in methanol-d4,
[2]+ and [4]+ in DMSO-d6 and [5]2+ in acetone-d6. The blue-colored peaks are assigned to the
tetradentate ligands, the red peaks are assigned to the chiral ligand,
the green peaks are assigned to the bridging amine, and the black
peaks are unassigned.
1H NMR spectra of [1]+ and [3]+ in methanol-d4,
[2]+ and [4]+ in DMSO-d6 and [5]2+ in acetone-d6. The blue-colored peaks are assigned to the
tetradentate ligands, the red peaks are assigned to the chiral ligand,
the green peaks are assigned to the bridging amine, and the black
peaks are unassigned.Interestingly, the biqbpy analogue [2]Cl showed 18
aromatic signals at room temperature in solution, indicating that,
unlike [1]Cl, this complex has no average plane of symmetry:
the chemical environment of the terminal quinolines on the side of
the DMSO versus chloride axial ligands (i) is different enough to
be distinguished and (ii) cannot exchange on the NMR time scale at
room temperature. In other words, each pair of protons of the biqbpy
ligand that are equivalent by symmetry in the free ligand, and would
remain equivalent in a hypothetical planar conformation tetracoordinated
to a metal center, becomes diastereotopic in the real, helical complex.
In the absence of rapid exchange of the helicity of the complex, they
can be distinguished by NMR. Biqbpy has hence increased strain, compared
to bapbpy, with regard to helix inversion, which can be interpreted
as a cause of the larger size of the quinoline groups, compared to
pyridine groups in [1]+. The substitution
of the achiral DMSO ligand in [2]+ with the
chiral sulfoxide MTSO, to give [4]+, led according
to 1H NMR to the formation of one major and one minor diastereoisomer,
with a diastereoisomeric excess of ∼50. The symmetry here was
very low as well, which pointed to the absence of inversion of the
helix at room temperature. For example, four amine peaks can be clearly
distinguished near 11.6 ppm. As a note, diastereomers are distinct
species with a priori different physical properties that one expects
to be separable on achiral high-performance liquid chromatography
(HPLC) columns. Disappointingly, we were unable to separate these
two diastereoisomers, neither on an achiral preparative nor on a chiral
semi-prep Astec CYCLOBOND I 2000 DMP column. The labile chloride ligand
proved problematic as it was rapidly hydrolyzed with the aqueous component
of the HPLC eluents and further substituted with MeCN, effectively
rendering any eluents containing H2O or MeCN dysfunctional.
Other eluent systems were tried but did not yield the desired separation.
Still, we were able to identify two species when an analytical sample
was measured on the chiral semi-prep DMP column, with 0.1 M NH4Cl in MeOH as an eluent, as seen in Figure S2. Finally, in the NMR spectrum of [5](PF6)2 (Figure ), only nine peaks were assigned to the biqbpy ligand and
two peaks for the axial pyridines (EtOHPy) as the complex has a C2
rotational symmetry axis. Each molecule has three chiral centers,
and the crystal structure shows the presence of both the P and M epimers.
Although at a first glance the 1H NMR seemed to show only
one species in the aromatic region, in the aliphatic region, it showed
two doublets overlapping at 1.09 ppm, which are assigned to diastereomeric
methyl groups of the coordinated EtOHPy. The 13C NMR spectrum
also showed two peaks almost overlapping at 65.7 ppm for the CH chiral
carbon atom of the axial ligands. These results confirm the formation
of two closely related epimers, even though the chiral centers are
too far apart to directly influence each other, and most aromatic
signals for the epimers seem to overlap. Also, in this case, the separation
of these two epimers could not be achieved.Clearly, upon coordination
to the metal, the helicity of the bapbpy
ligand switches back and forth quickly at room temperature, while
that of biqbpy is blocked. To measure the inversion barriers for both
types of structures, variable-temperature 1H NMR spectra
were recorded for compounds [1]+, [2]+, and [3]+ (Figure ). The spectra of [1]+ and [3]+ showed a doubling
of the number of peaks as the temperature decreased. Thus, as the
temperature was lowered, the interconversion of both terminal pyridines
in the helical complexes became slow, compared to NMR time scales,
leading to vanishing of the average plane of symmetry of the bapbpy
ligand in both enantiomers and to the observation of 1:1 pairs of
diastereoisomeric bapbpy protons for compound [1]+. For compound [3]+, the same phenomenon
resulted in the blocking of the interconversion of the two diastereomers,
below which their protons became distinguishable as well. The integrals
of both diastereoisomers were roughly 1:1, showing that these diastereomers
had similar Gibbs free energies. The coalescence energy of [1]+ was found to be 43 kJ/mol, determined from
the doublet at 8.25 ppm and at a corresponding coalescence temperature
of 206 K.[36] For compound [3]+, 44 kJ/mol was found from the singlet at 2.5 ppm and
at a coalescence temperature of 216 K. Both values are significantly
lower than the 96.3 kJ/mol reported for [5]helicine, demonstrating
that comparatively very rapid interconversion occurs at room temperature.
The contribution of the different sulfoxide was minimal, which indicated
that the coalescence energy was mainly determined from the size of
the pyridyl group and not from the size of the sulfoxide substituents.
Figure 5
(a) Variable-temperature 1H NMR of [1]+ in methanol-d4 from 296 to 176
K. (b) [3]+ in methanol-d4 from 296 to 196 K. (c) [2]+ in
DMSO-d6 from 296 to 376 K.
(a) Variable-temperature 1H NMR of [1]+ in methanol-d4 from 296 to 176
K. (b) [3]+ in methanol-d4 from 296 to 196 K. (c) [2]+ in
DMSO-d6 from 296 to 376 K.For compound [2]+, the
coalescence temperature
was dramatically increased, compared to that of [1]+ and [3]+. When the temperature was
increased up to 376 K, which was the limit of our spectrometer, 18
diastereotopic protons could still be seen, pointing to an absence
of exchange of the terminal quinolines even at such high temperatures.
Overall, the increased size of the quinolyl groups in [2]+ resulted in a significant increase in the coalescence
energy of this complex, compared to that of [1]+. This coalescence energy must be higher than 79 kJ/mol, which is
the value calculated based on the chemical shift of the two triplets
at 6.37 and 6.29 ppm and at a coalescence temperature of 376 K.Attempts to prepare a helical compound with increased steric strain
generated by methoxy groups in ortho-position to the N atoms of the
terminal pyridyl groups of bapbpy produced unexpected results. When
reacting OMe-bapbpy with [Ru(DMSO)4Cl2] under
the same conditions as those used to make [1]Cl and [3]Cl, a solid was obtained ([6]Cl) that could
initially not be identified by 1H NMR. Single crystals
suitable for X-ray structure determination were obtained, which allowed
identification of the product (Figure ). According to this crystal structure, the product
resulted not only from ligand coordination but also from a subsequent
ring-closing reaction, which was accompanied by the removal of one
of the methoxy groups, and the methylation of one of the bridging
amines. In the X-ray structure of [6]OTf, the resulting
dissymmetric macrocycle (macro) ligand was coordinated to ruthenium,
generating four symmetry-unequivalent pyridyl rings (Scheme ). This structure was further
confirmed by NMR and high-resolution mass spectroscopy (HRMS) ([M
+ MeCN–2Cl–H]+ calcd m/z = 588.07510, found m/z = 588.07561) analyses of the product (see full characterization
in the Experimental Part). This reaction was
robust and reproducible, affording the macrocycle in high yield (∼75%).
We hypothesize the following mechanism for the formation of the macrocycle
in [6]+. The close proximity of the two facing
methoxy groups arising from the coordination of the OMe-bapbpy ligand
to ruthenium(II) might facilitate an intramolecular nucleophilic aromatic
substitution via an oxonium ion intermediate, which would subsequently
transfer a methyl group, probably in a bimolecular reaction, to the
facing amine bridge, thereby forming the final dissymmetric macrocycle.
Figure 6
Displacement
ellipsoid plots (50% probability level) of the crystal
structures of [6]OTf, [7](OTf)·MeOH,
and [8](OTf)2 at 110(2) K. Counterions, hydrogens,
and lattice solvent molecules have been omitted for clarity.
Scheme 1
Synthetic Route Toward Compounds [6]+, [7]+, and [8]2+
(a) [Ru(DMSO)4(Cl)2], EtOH, 85 °C. (b) [Pd(1,5-cyclooctadiene)Cl2], EtOH, 85 °C. (c) MTSO, MeOH, 75 °C.
Displacement
ellipsoid plots (50% probability level) of the crystal
structures of [6]OTf, [7](OTf)·MeOH,
and [8](OTf)2 at 110(2) K. Counterions, hydrogens,
and lattice solvent molecules have been omitted for clarity.
Synthetic Route Toward Compounds [6]+, [7]+, and [8]2+
(a) [Ru(DMSO)4(Cl)2], EtOH, 85 °C. (b) [Pd(1,5-cyclooctadiene)Cl2], EtOH, 85 °C. (c) MTSO, MeOH, 75 °C.The dissymmetric nature of the macrocycle in [6]+ also caused the ruthenium complex to be chiral-at-metal
as
the metal center was bound in this structure to six non-equivalent
heteroatoms. In the crystal structure of [6]OTf, both
enantiomers were found as the structure was centrosymmetric. When
the chiral sulfoxide MTSO ligand was coordinated to this scaffold,
to afford [7]Cl, the number of peaks in the 1H NMR spectrum of [7]Cl roughly doubled, which is consistent
with the dissymmetric nature of the ring and the formation of a 1:1
mixture of diastereoisomers. Although we were unable to separate these
diastereoisomers, we did obtain a crystal structure of [7](OTf)(MeOH) (Figure ), which also showed the presence of both diastereoisomers in the
crystal packing. As a note, dissymmetric macrocyclic ligands have
been reported in particular for preparing chiral catenanes and other
topologically non-obvious mechanically interlocked molecules,[37,38] but they are often challenging to make. Here, the macrocycle was
obtained in a straightforward manner and in good yields, although
the presence of the coordinated ruthenium center prevents threading
of any molecular building block into the ring.Finally, to further
investigate the role of the metal in this unexpected
cyclization reaction, we investigated the coordination of the OMe-bapbpy
ligand to the palladium(II) precursor dichloro(1,5-cyclooctadiene)platinum(II)
using otherwise identical reaction conditions. Palladium(II) is a
d8 metal center usually affording square-planar complexes
deprived of axial ligands. Surprisingly, this reaction resulted in
the simple coordination of the tetrapyridyl ligand to the complex
without ring closure, to afford complex [8]2+. The identity of complex [8]2+ was supported
by NMR, mass spectrometry(ES-MS [Pd(OMe-bapbpy)-H+]+ calcd m/z = 505.0, found m/z 504.9), and single crystal X-ray crystallography
of [8](OTf)2 (Figure ), which clearly showed an increase in helical
strain caused by the terminal methoxy groups, with a N1N3N4N6 dihedral
angle that was twice higher (20.8(9)°) than that found in the
bapbpy complex [3]+. Even though macrocycle
formation did not occur with palladium(II), this crystal structure
also demonstrated the close spatial proximity between the two methoxy
groups upon binding of the four pyridyl groups to the metal, with
a O2–C1 distance between the “top” oxygen O1
and “bottom” oxygen O2 of 3.01(7) Å. To see if
the axial ligands of the ruthenium(II) precursor were pivotal in the
macrocycle formation, we also reacted the OMe-bapbpy ligand with a
Rh(III) precursor (RhCl3 3H2O) under otherwise
identical conditions. Here as well, 1H NMR and electrospray
ionization mass spectrometry (ESI-MS) of the product showed simple
coordination of the ligand to rhodium(III) (ES-MS [Rh(OMe-bapbpy)(Cl)2]+ calc m/z =
573.0, found m/z = 572.9), without
formation of any macrocycle. This result indicated that the presence
of the two axial ligands on ruthenium(II) was not the only reason
for the facilitated macrocycle formation in [6]+, and that the macrocyclization reaction was specific to
the chemical reactivity of ruthenium(II).
Conclusions
In this work, we report the synthesis of
helical ruthenium compounds
with various levels of steric strain ortho to the terminal pyridyl
rings of bapbpy-like ligands. The coordination of an enantiomerically
pure (R)-sulfoxide axial ligand confirmed that the
terminal pyridines of [3]+ can freely interconvert
at room temperature. Variable-temperature NMR allowed the determination
of coalescence temperature and energy for both complexes [1]+ and [3]+ (43 and 44 kJ/mol,
respectively). In [2]+, the terminal quinolines
cannot exchange at room temperature, and heating up to 376 K did not
allow to overcome such steric clash. Coordination of the chiral sulfoxide
ligand MTSO led to the formation of one major and one minor species,
but they could not be separated on HPLC, essentially due to the labile
character of the trans-chloride ligand. Finally,
we report the serendipitous discovery of a robust macrocycle-forming
reaction when the methoxy-functionalized OMebapbpy ligand was reacted
with ruthenium(II). This reactivity is specific to ruthenium(II) as
palladium(II) and rhodium(III) precursors did not result in macrocycle
formation but instead led to the simple coordination of the OMebapbpy
ligand.
Experimental part
All commercially available reagents were
ordered from Sigma-Aldrich and were used as received. Bapbpy,[32] biqbpy,[40] ()-methyl p-tolyl
sulfoxide (MTSO),[41] and compound [1]Cl[33] were prepared according
to literature procedures. All reactions were carried out under a N2 atmosphere. Filters used were Whatman regenerated cellulose
membrane filters, RC60 membrane circles, diam. 47 mm, pore size 1
μm. NMR spectra were recorded on a Bruker, AV-500 spectrometer.
HPLC purifications were attempted on a nonchiral column Jupiter 4u
Protea 90A, ASXIA and a chiral CYCLOBOND I 2000 DMP column. ESI-MS
spectra were recorded by using a MSQ Plus spectrometer in the positive
ionization mode. HRMS spectra were recorded on a Waters XEVO-G2 XSQ-TOF
mass spectrometer equipped with an electrospray ion source in the
positive mode (source voltage 3.0 kV, desolvation gas flow 900 L/h,
temperature 250 °C) with resolution R = 22,000
(mass range m/z = 50–2000)
and 200 pg/uL Leu-enkephalin (m/z = 556.2771) as a “lock mass”.
OMe-bapbpy
6,6′-Dibromo-2,2′-bipyridine
(3.0 g, 10 mmol), Pd(dba)2 (295 mg, 0.51 mmol), (Rac)-BINAP (500 mg,
0.80 mmol), and potassium t-butoxide (4.2 g, 38 mmol)
were added to a flask containing toluene (300 mL). Afterward, 2-amino-6-methoxypyridine
(3.1 mL, 29 mmol) was added, and the reaction was refluxed overnight
at 110 °C. The next day, the reaction was allowed to cool down
to room temperature, after which water (150 mL) was added. The mixture
was stirred for 1 h, after which it was filtered, and the solid washed
with water (2 × 25 mL). The solid residue was finally dried under
vacuum to afford the title compound as a beige-colored solid. Yield:
3.6 g, 8.9 mmol, 90%. 1H NMR (500 MHz, DMSO): δ 9.66
(s, 2H), 7.89–7.80 (m, 4H), 7.75 (d, J = 6.7
Hz, 2H), 7.64 (t, J = 7.9 Hz, 2H), 7.49 (d, J = 7.9 Hz, 2H), 6.31 (d, J = 7.9 Hz, 2H),
3.89 (s, 6H). 13C NMR (126 MHz, DMSO): δ 162.36 (Cq),
153.69 (Cq), 153.53 (Cq), 152.49 (Cq), 140.39 (CH), 138.33 (CH), 112.43
(CH), 112.08 (CH), 103.10 (CH), 100.70 (CH), 53.02 (CH3). HRMS [M + H]+: 401.17205 (calculated), 401.17204 (measured).
[2]Cl (42 mg, 0.08
mmol) and MTSO (0.17 g, 1.1 mmol) were added to degassed methanol
(15 mL). The solution was refluxed for 3 days at 75 °C under
a N2 atmosphere. After concentration in vacuo, the solid
residue was sonicated in ethyl acetate (15 mL) and filtered and washed
with diethyl ether (2 × 50 mL) to obtain the title compound [4]Cl as a dark-brown powder. Yield: 45 mg 0.06, 75%. HRMS
[M – 2Cl–H]+: 695.11704 (calculated) 695.11677
(measured). Elem. Anal. Calcd. for [C36H30Cl2N6ORuS]: C, 56.40; H, 3.94; N, 10.96. Found: C,
56.28; H, 3.93; N, 10.94.
[5](PF6)2
[2]Cl (53 mg, 0.08 mmol) and (R)-4-(1-hydroxyethyl)pyridine
(0.45 g, 3.6 mmol) were added to a flask containing deoxygenated demineralized
water (45 mL). The solution was stirred for 1 day at 80 °C under
a N2 atmosphere. The suspension was filtered, and saturated
aqueous KPF6 solution (5 mL) was added to the filtrate,
after which a precipitate formed. This precipitate was filtered, washed
with water (2 × 20 mL), and dried under vacuo to obtain the compound
as dark-brown/red solid. Yield: 0.68 g, 0.07 90%. 1H NMR
(500 MHz, acetone): δ 8.52–8.39 (m, 3H), 8.34 (dd, J = 7.9, 0.9 Hz, 1H), 8.19 (t, J = 8.0
Hz, 1H), 7.90 (d, J = 8.3 Hz, 1H), 7.80 (d, J = 8.8 Hz, 1H), 7.68 (dd, J = 7.9, 1.6
Hz, 1H), 7.15 (d, J = 8.9 Hz, 1H), 7.11 (d, J = 6.2 Hz, 1H), 6.91 (t, J = 7.4 Hz, 1H),
6.38–6.30 (m, 1H), 4.61 (d, J = 6.8 Hz, 1H),
4.44 (s, 1H), 1.10 (dd, J = 6.5, 4.1 Hz, 3H). 13C NMR (126 MHz, acetone): δ 156.77 (Cq), 155.49 (Cq),
153.76 (CH), 152.49 (Cq), 149.83 (Cq), 147.82 (Cq), 138.46 (CH), 136.43
(CH), 127.54 (CH), 127.24 (CH), 126.95 (CH), 124.48 (Cq), 123.94 (CH),
121.56 (CH), 117.44 (CH), 115.68 (CH), 115.48 (CH), 65.73, 65.68,
23.08 (CH3). HR-MS [M – 2(PF6)]2+: 394.10808 (calculated), 394.10743 (measured). Elem. Anal. Calcd.
for [C42H38F12N8O2P2Ru] + 0.2 KPF6: C, 45.26; H, 3.44;
N, 10.05. Found: C, 45.54; H, 3.31; N, 9.36.
[6]Cl
The ligand OMe-bapbpy (0.16 g, 0.41
mmol) and [Ru(DMSO)4(Cl)2] (0.20 g, 0.41 mmol)
were added to a flask containing deoxygenated EtOH (25 mL). The solution
was refluxed over the weekend at 85 °C under a N2 atmosphere.
Afterward, the mixture was concentrated in vacuo and re-precipitated
from MeOH (10 mL) and an excess of diethyl ether (50 mL), filtered
and washed with diethyl ether (2 × 50 mL), and dried overnight
in vacuo to obtain [6]Cl as an orange-red solid. Yield:
0.21 g, 0.37, 84%.1H NMR (500 MHz, DMSO): δ
11.92 (s, 1H), 8.46 (d, J = 7.2 Hz, 1H), 8.37 (d, J = 7.0 Hz, 1H), 8.22 (dd, J = 8.4, 7.8
Hz, 1H), 8.12 (dt, J = 9.3, 8.2 Hz, 2H), 7.98 (t, J = 8.0 Hz, 1H), 7.69 (d, J = 7.5 Hz, 1H),
7.64 (d, J = 7.6 Hz, 1H), 7.39–7.32 (m, 2H),
7.14 (d, J = 7.0 Hz, 1H), 6.93 (d, J = 6.8 Hz, 1H), 3.75 (s, 3H), 2.53 (s, 3H), 2.40 (s, 3H). 13C NMR (126 MHz, DMSO): δ 156.46 (Cq), 156.15 (Cq), 155.07 (Cq),
154.82 (Cq), 154.26 (Cq), 154.07 (Cq), 149.29 (Cq), 148.69 (Cq), 140.86
(CH), 140.07 (CH), 137.69 (CH), 137.27 (CH), 116.90 (CH), 116.54 (CH),
115.56 (CH), 114.19 (CH), 112.31 (CH), 109.03 (CH), 108.22 (CH), 104.74
(CH), 44.55 (CH3), 43.83 (CH3), 43.31 (CH3). HRMS [M + MeCN–2Cl–H]+: 588.07510 (calculated), 588.07561 (measured). Elem. Anal.
Calcd. for [C23H22Cl2N6O2RuS] + 1.4 H2O: C, 42.91; H, 3.88; N, 13.06.
Found: C, 42.88; H, 3.64; N, 12.96.
[7]Cl
[6]Cl (0.11 g, 0.17
mmol) and MTSO (0.54 g, 3.5 mmol) were added to degassed methanol
(25 mL). The solution was refluxed for 3 days at 75 °C under
a N2 atmosphere. The reaction mixture was concentrated
in vacuo, and ethyl acetate (10 mL) was added. The suspension was
then sonicated for 20 min at room temperature in a Brandson 3510 ultrasonic
cleaner. The suspension was filtered, and the solid fraction was dried
overnight in vacuo to obtain the title compound as yellow solid. Yield:
0.10 mg, 0.15 mmol, 87%. 1H NMR (500 MHz, DMSO): δ
8.40 (d, J = 7.9 Hz, 1H), 8.37–8.29 (m, 2H),
8.23 (d, J = 7.7 Hz, 1H), 8.19–8.01 (m, 6H),
7.98 (t, J = 8.0 Hz, 1H), 7.92 (t, J = 8.0 Hz, 1H), 7.59–7.45 (m, 5H), 7.39 (d, J = 7.9 Hz, 1H), 7.33 (d, J = 8.3 Hz, 1H), 7.26 (t, J = 9.1 Hz, 2H), 7.12 (d, J = 8.0 Hz, 1H),
7.11–6.98 (m, 6H), 6.93 (d, J = 7.9 Hz, 1H),
6.81 (d, J = 7.8 Hz, 1H), 6.64 (d, J = 8.0 Hz, 2H), 6.58 (d, J = 8.0 Hz, 2H), 3.63 (s,
3H), 3.54 (s, 3H), 2.90 (s, 3H), 2.78 (s, 3H), 2.70 (s, 2H), 2.54
(s, 1H), 2.37 (s, 2H), 2.24 (d, J = 2.5 Hz, 6H).
HR-MS [M – Cl]+: 664.10707 (calculated), 664.10640
(measured). Elem. Anal. Calcd. for [C29H26Cl2N6O2RuS] + 0.5 H2O: C, 49.50;
H, 3.87; N, 11.94. Found: C, 48.93; H, 3.71; N, 12.17.
[8](Cl)2
The ligand OMe-bapbpy
(71 mg, 0.18 mmol) and [Pd(1,5-cyclooctadiene)(Cl)2] (50
mg, 0.18 mmol) were added to a one-necked round-bottom flask containing
deoxygenated EtOH (25 mL). The solution was refluxed over the weekend
at 85 °C under a N2 atmosphere. To ensure that no
side products were removed, the reaction mixture was concentrated
in vacuo and afforded in [8](Cl)2 in quantitative
yield. 1H NMR (500 MHz, DMSO): δ 12.98 (s, 1H), 8.28
(dd, J = 8.5, 7.6 Hz, 1H), 8.18 (d, J = 6.6 Hz, 1H), 8.13 (t, J = 8.1 Hz, 1H), 7.88 (d, J = 7.4 Hz, 1H), 7.45 (d, J = 7.2 Hz, 1H),
6.72 (d, J = 7.3 Hz, 1H), 3.41 (s, 3H). 13C NMR (126 MHz, DMSO): δ 163.17 (Cq), 154.24 (Cq), 146.79 (Cq),
146.13 (Cq), 143.88 (CH), 141.64 (CH), 117.22 (CH), 116.12 (CH), 107.01
(CH), 98.87 (CH), 56.62 (CH3). ES-MS [M – 2Cl–H]+: 505.0 (calculated) 504.9 (measured).
[9](Cl)
The ligand OMe-bapbpy (96 mg,
0.24 mmol) and [Rh(Cl)3]3H2O (50 mg, 0.19 mmol)
were added to one-necked round-bottom flask containing deoxygenated
EtOH (25 mL). The solution was refluxed over the weekend at 85 °C
under a N2 atmosphere. To ensure that no side products
were removed, the reaction mixture was concentrated in vacuo and was
analyzed without further purification and afforded [Rh(OMe-bapbpy)(Cl)2]Cl in quantitative yield. 1H NMR (500 MHz, DMSO):
δ 11.80 (s, 1H), 8.31 (d, J = 7.6 Hz, 1H),
8.20 (t, J = 8.0 Hz, 1H), 8.03 (t, J = 8.1 Hz, 1H), 7.59 (d, J = 8.4 Hz, 1H), 7.18 (d, J = 8.0 Hz, 1H), 6.65 (d, J = 8.2 Hz, 1H),
3.40 (s, 3H). ES-MS [M – Cl]+: 573.0 (calculated)
572.9 (measured).
Authors: Sylvestre Bonnet; Maxime A Siegler; José Sánchez Costa; Gábor Molnár; Azzedine Bousseksou; Anthony L Spek; Patrick Gamez; Jan Reedijk Journal: Chem Commun (Camb) Date: 2008-09-29 Impact factor: 6.222
Authors: Catherine A J Hooper; Lucia Cardo; James S Craig; Lazaros Melidis; Aditya Garai; Ross T Egan; Viktoriia Sadovnikova; Florian Burkert; Louise Male; Nikolas J Hodges; Douglas F Browning; Roselyne Rosas; Fengbo Liu; Fillipe V Rocha; Mauro A Lima; Simin Liu; David Bardelang; Michael J Hannon Journal: J Am Chem Soc Date: 2020-11-20 Impact factor: 15.419
Authors: V H S van Rixel; B Siewert; S L Hopkins; S H C Askes; A Busemann; M A Siegler; Sylvestre Bonnet Journal: Chem Sci Date: 2016-04-25 Impact factor: 9.825
Authors: Vincent H S van Rixel; Anja Busemann; Mathijs F Wissingh; Samantha L Hopkins; Bianka Siewert; Corjan van de Griend; Maxime A Siegler; Tiziano Marzo; Francesco Papi; Marta Ferraroni; Paola Gratteri; Carla Bazzicalupi; Luigi Messori; Sylvestre Bonnet Journal: Angew Chem Int Ed Engl Date: 2019-05-28 Impact factor: 15.336
Authors: Anja Busemann; Ingrid Flaspohler; Xue-Quan Zhou; Claudia Schmidt; Sina K Goetzfried; Vincent H S van Rixel; Ingo Ott; Maxime A Siegler; Sylvestre Bonnet Journal: J Biol Inorg Chem Date: 2021-08-10 Impact factor: 3.358
Authors: Daniel W Armstrong; Jeongjae Yu; Houston D Cole; Sherri A McFarland; Jordan Nafie Journal: J Pharm Biomed Anal Date: 2021-06-29 Impact factor: 3.571