| Literature DB >> 36161303 |
Jie Zhou1, Zezhong Liu1,2, Guangxu Zhang1, Wei Xu1, Lixiao Xing1, Lu Lu1, Qian Wang1, Shibo Jiang1.
Abstract
The newly emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with high transmission rates and striking immune evasion have posed a serious challenge to the application of current first-generation SARS-CoV-2 vaccines. Other sarbecoviruses, such as SARS-CoV and SARS-related coronaviruses (SARSr-CoVs), have the potential to cause outbreaks in the future. These facts call for the development of variant-proof SARS-CoV-2, pan-sarbecovirus or pan-β-CoV vaccines. Several novel vaccine platforms have been used to develop vaccines with broad-spectrum neutralizing antibody responses and protective immunity to combat the current SARS-CoV-2 and its variants, other sarbecoviruses, as well as other β-CoVs, in the future. In this review, we discussed the major target antigens and protective efficacy of current SARS-CoV-2 vaccines and summarized recent advances in broad-spectrum vaccines against sarbecoviruses and β-CoVs.Entities:
Keywords: COVID-19; RBD; SARS-CoV-2; pan-sarbecovirus; pan-β-coronavirus; vaccines
Year: 2022 PMID: 36161303 PMCID: PMC9538210 DOI: 10.1002/jmv.28172
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Figure 1Spike protein of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2). Sequence diagram and structure diagram of S protein. S protein contains S1 and S2 subunits. The left (three RBDs, down S trimer) and the right (one RBD, up S trimer) were shown as surface in Cryo‐EM resolved structures (modified from 6ZGE and 6ZGG). CTD, C terminal domain; HR, heptad repeat; NTD, N terminal domain; RBD, receptor binding domain.
WHO Emergency Use Listing and Prequalification (EUL/PQ)‐approved vaccines and their antigens
| Vaccine | Manufacturer | Antigen | Type of vaccine | Reference |
|---|---|---|---|---|
| CoronaVac/PiCoVacc | Sinovac, National Institute for Communicable Disease Control and Prevention, China | Whole virus (CN2 strain) | Inactivated virus | [ |
| BBIBP‐CorV | Beijing Institute of Biological Products, Sinopharm and Institute of Viral Disease Control and Prevention, China | Whole virus (HB02 strain) | Inactivated virus | [ |
| Covaxin/BBV152 | Bharat Biotech and Indian Council of Medical Research | Whole virus (NIV‐2020‐770) | Inactivated virus | [ |
| BNT16B2 | BioNTech, Fosun Pharma, and Pfizer, Germany | S‐2P | LNP‐mRNA | [ |
| mRNA‐1273 | Moderna, National Institute of Allergy and Infectious Diseases, USA | S‐2P | LNP‐mRNA | [ |
| ChAdOx1 nCoV‐19/AZD1222 | The University of Oxford, and AstraZeneca, UK | Full‐length S | Nonreplicating viral vector | [ |
| Convidecia™ Ad5‐nCoV | CanSino Biological Inc. and Beijing Institute of Biotechnology, China | Full‐length S | Nonreplicating viral vector | [ |
| Ad26. COV2‐S | Johnson & Johnson, USA | S‐2P | Nonreplicating viral vector | [ |
| NVX‐CoV2373 | Novavax, USA | S‐2P | Protein‐based | [ |
Figure 2Severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) RBD‐specific binding footprints of neutralizing antibodies. RBD (RBM) top face, inner face and outer face were shown in the left with teal RBM. Sequence conservation was calculated by the ConSurf Database. RBD‐specific binding interface footprints of four classifications of neutralizing antibody regions were colored in teal in the right. For each class of antibody binding region (RBD1‐4), the footprints of two representative antibodies on the RBD are shown. RBD, receptor binding domain; RBM, receptor binding motif.
Figure 3Currently utilized severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) vaccine types. Six types of currently used vaccines against the COVID‐19 pandemic. Illustration created by the authors using BioRender (http://www.biorender.com).
Variant‐proof COVID‐19 vaccines
| Variant‐proof COVID‐19 vaccines | Properties | Species immunized | Dose | Neutralization assay method | Neutralizing and cross‐neutralizing activity for SARS‐CoV‐2 and its variants | Reference |
|---|---|---|---|---|---|---|
| Multivalent COVID‐19 inactivated vaccine | HB02 + Delta + Omicron trivalent inactivated vaccine | Mice |
Day 0‐prime Day 21‐boost | Microplate CPE (micro‐cytopathogenic efficiency) assay |
WT(HB02): GM NT50 up to ~3271 Beta: GM NT50 up to ~1753 Delta: GM NT50 up to ~1544 Omicron (B.1): GM NT50 up to ~2072 | [ |
| ZF2001 | Tandem‐repeat dimeric RBD (Wuhan‐Hu‐1) with alum‐based adjuvant | Human (in clinical phase 3) |
Month 0‐prime Month 1‐boost Month 4–6‐boost | VSV‐ΔG‐GFP based SARS‐CoV‐2 pseudovirus neutralization assay |
WT: pVNT50 ~390 Alpha: pVNT50 ~536 Beta: pVNT50 ~323 Gamma: pVNT50 ~418 Delta: pVNT50 ~407 Omicron: (BA.2: pVNT50 ~629 BA.2.12.1: pVNT50 ~457 BA.4/BA.5: pVNT50 ~270) Epsilon: pVNT50 ~529 Eta: pVNT50 ~310 Kappa: pVNT50 ~262 | [ |
| RBD‐NP | Multivalent SARS‐CoV‐2 RBD nanoparticle (RBD‐NP) with AS03‐adjuvanted |
Rhesus macaques Pigtail macaques |
Day 0‐prime Day 21‐boost
Day 0‐prime Day 28‐boost Day 168‐boost | HIV‐based SARS‐CoV‐2 pseudovirus neutralization assay |
WT(D614G): GM NT50 up to ~103 Alpha: GM NT50 up to ~103 Beta: GM NT50 up to ~102 Gamma: GM NT50 up to ~102
WT(D614G): GM NT50 up to ~2 × 104 Alpha: GM NT50 up to ~2 × 104 Beta: GM NT50 up to ~8 × 103 | [ |
| SpFN | A stabilized S trimer with stabilizing prolines (K986P, V987P), removal of the furin cleavage site (RRAS to GSAS) ormation on the ferritin scaffold with ALFQ‐adjuvanted | Mice |
Day 0‐prime Day 21‐boost Day 42‐boost | HIV‐based SARS‐CoV‐2 pseudovirus neutralization assay |
WT(Wuhan): GM NT50 up to ~104 Alpha: GM NT50 up to ~2 × 103 Beta: GM NT50 up to ~2 × 103 | [ |
|
circRNARBD‐Delta (circular RNA) | A covalently closed ring RNA molecules encoding trimeric SARS‐CoV‐2 Delta‐RBD | Mice |
Day 0‐prime Day 14‐boost | VSV‐based SARS‐CoV‐2 pseudovirus neutralization assay |
WT: GM NT50 up to ~104 Alpha: GM NT50 up to ~104 Beta: GM NT50 up to ~103 Delta: GM NT50 up to ~1.4 × 105 Omicron: GM NT50 up to ~ 4.7 × 103 | [ |
| VFLIP‐X | A circRNA encoding the full‐length engineered VFLIP S protein possessing native‐like glycosylation with substitutions of six amino acids (D614G, K417N, L452R, T478K, E484K, and N501Y). | Mice |
Day 0‐prime Day 21‐boost |
Microneutralization assay of infectious SARS‐CoV‐2 variant Lentivirus‐based pseudovirus neutralization assay |
Infectious SARS‐CoV‐2 variants: WT: NT50 up to ~102 Alpha: NT50 up to ~103 Beta: NT50 up to ~103 Delta: NT50 up to ~102 Omicron: NT50 up to ~102 Pseudovirus: B.1: pVNT50 up to ~103 Epsilon: pVNT50 up to ~102 Mu: pVNT50 up to ~102 Lambda: pVNT50 up to ~102 Omicron: pVNT50 up to ~103 | [ |
Abbreviations: CTD, C terminal domain; HR, heptad repeat; NTD, N terminal domain; RBD, receptor binding domain; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2.
Figure 4Potent efficacy of pan‐sarbecovirus vaccine CF501/RBD‐Fc. CF501 is a small‐molecule STING agonist. severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) receptor binding domain (RBD)‐Fc adjuvanted with CF501 elicited potent and durable neutralizing antibody and T cell responses, broad neutralizing activity against sarbecoviruses, and durable protective immunity in mice, rabbits, and nonhuman primates.
Pan‐sarbecovirus (β‐CoV‐B) vaccines
| Pan‐sarbecovirus vaccines | Properties | Animal immunized | Dose | Analysis method | Neutralizing and cross‐neutralizing activity against sarbecovirus | Reference | |
|---|---|---|---|---|---|---|---|
| CF501/RBD‐Fc | SARS‐CoV‐2 RBD conjugated with a human IgG Fc fragment (RBD‐Fc) and a STING agonist CF501 as an adjuvant |
Mice Rabbits Rhesus macaques |
Day 0‐prime Day 14‐boost Day 28‐boost
Day 0‐prime Day 14‐boost Day 28‐boost Day 42‐boost
Day 0‐prime Day 21‐boost Day 115‐boost |
HIV‐based pseudovirus neutralization assay Cell‐cell fusion assay |
SARS‐CoV‐2: GM NT50 up to ~104 SARS‐CoV: GM NT50 up to ~102 Rs3367: GM NT50 up to ~103 WIV1: GM NT50 up to ~102 RsSHC014: IT50 up to ~103
SARS‐CoV‐2: GM NT50 up to ~103 SARS‐CoV: GM NT50 up to ~103 Rs3367: GM NT50 up to ~104 WIV1: GM NT50 up to ~103 RsSHC014: IT50 up to ~103
SARS‐CoV: GM NT50 up to ~103 Rs3367: GM NT50 up to ~104 WIV1: GM NT50 up to ~104 |
| |
| Mosaic‐sarbecovirus RBD‐NPs | Equimolar mixture of RBD of SARS‐CoV‐2, SARS‐CoV, WIV1, and RaTG13 were added to nanoparticles | Mice |
Day 0‐prime Day 21‐boost |
MLV‐based SARS‐CoV‐2 and SARS‐CoV pseudovirus neutralization assay VZV‐based RsSHC014 pseudovirus neutralization assay |
SARS‐CoV‐2(D614G): GM NT50 up to ~103 SARS‐CoV: GM NT50 up to ~103 RsSHC014: GM NT50 up to ~102 |
| |
| Cocktail‐sarbecovirus RBD‐NPs | Independently assembled nanoparticles, each displaying a single RBD from SARS‐CoV‐2, SARS‐CoV, WIV1, or RaTG13 | Mice |
Day 0‐prime Day 21‐boost |
MLV‐based SARS‐CoV‐2 and SARS‐CoV pseudovirus neutralization assay VZV‐based SHC014 pseudovirus neutralization assay |
SARS‐CoV‐2(D614G): GM NT50 up to ~103 SARS‐CoV: GM NT50 up to ~103 RsSHC014: GM NT50 up to ~102 |
| |
| Mosaic‐8b | Nanoparticle presenting the SARS‐2 Beta RBD and seven other sarbecovirus RBDs (RaTG13, RsSHC014, and Rs4081 pang17, RmYN02, Rf1, and WIV1) |
Mice cynomolgus macaques |
Day 0‐prime Day 28‐boost
Day 0‐prime Day 28‐boost Day 92‐boost | HIV‐based pseudovirus neutralization assay |
SARS‐CoV‐2(Wuhan‐hu‐1): GM NT50 up to ~102 SARS‐CoV: GM NT50 up to ~103 WIV1: GM NT50 up to ~104 RsSHC014: GM NT50 up to ~104
SARS‐CoV: ID50 up to ~103 WIV1: ID50 up to ~103 RsSHC014: ID50 up to ~104 |
| |
| SARS‐CoV‐2 RBD‐scNP | SARS‐CoV‐2 RBD sortase A‐conjugated ferritin nanoparticle formulated with the TLR7/8 agonist 3M‐052‐aqueous formulation (3M‐052‐AF) plus Alum | Cynomolgus macaque |
Day 0‐prime Day 28‐boost Day 56‐boost | Live virus neutralization assays. |
SARS‐CoV‐2: ID50 up to ~104 SARS‐CoV: ID50 up to ~103 WIV1: ID50 up to ~103 RsSHC014: ID50 up to ~102 |
| |
| Chimeric spike mRNA vaccines | Nucleoside‐modified mRNA‐lipid nanoparticle (LNP) vaccines expressing chimeric spikes that contain admixtures of different RBD, NTD, and S2 modular domains from HKU3‐1, SARS‐CoV, SARS‐CoV‐2, or RsSHC014 | Mice |
Day 0‐prime Day 21‐boost | Nanoluciferase‐expressing‐based recombinant live viruses neutralization assay. |
SARS‐CoV‐2: logID50 up ~102 SARS‐CoV: logID50 up ~104 WIV1: logID50 up ~103 RsSHC014: logID50 up ~103 |
| |
Abbreviations: CTD, C terminal domain; HR, heptad repeat; NTD, N terminal domain; RBD, receptor binding domain; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2.
Figure 5Strategies of protein nanoparticle vaccines and antigen chimera vaccines for broad‐spectrum neutralization. (A) Three representative types of selfassembled nanoparticles for antigen delivery. Spy‐tagged antigen was conjugated with a Spycather003‐mi3, forming nanoparticles. I53‐50A and I53‐50B could assemble into virus‐like particle (VLP) nanoparticles after mixing. Helicobacter pylori‐derived ferritin conjugated with antigens could form 24‐mer or 60‐mer nanoparticles. (B) Four types of genetically fused S chimera trimer were shown above, and S protein was generally divided into 3 parts, N terminal domain (NTD), receptor binding domain (RBD), and others (CTD and S2). For each part, one type of coronavirus was filled in with specific colors. Yellow stands for SARS‐CoV, teal for severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2), gray for HKU3‐1 and green for RsSHC014. Chimera 1 contained SARS‐CoV (RBD)—HKU3‐1 (NTD)—SARS‐CoV‐2 (Others); chimera 2 contained SARS‐CoV‐2 (RBD)—SARS‐CoV (NTD)—SARS‐CoV (Others); chimera 3 contained SARS‐CoV (RBD)—SARS‐CoV‐2 (NTD)—SARS‐CoV‐2 (Others) and chimera 4 contained RsSHC014 (RBD)—SARS‐CoV‐2 (NTD)—SARS‐CoV‐2 (Others).
Figure 6Corresponding differences in immunization reactions between inhalation and intramuscular route. Intramuscular immunization induces antigen‐directed innate and adaptive responses and activates T and B cell responses. IgG+ plasma cells are generated, differentiated and maturated to create anti‐antigen neutralization antibodies. Apart from these immunological responses, inhalation immunization also induces tissue‐resident T cells and IgA+ B cells for circulating mucosal IgA antibodies.