| Literature DB >> 36160343 |
Aleksandra Bożyk1, Paweł Krawczyk1, Katarzyna Reszka2, Kinga Krukowska2, Agnieszka Kolak3, Sławomir Mańdziuk3, Kamila Wojas-Krawczyk1, Rodryg Ramlau4, Janusz Milanowski1.
Abstract
Introduction: Detection of abnormalities in the KRAS, NRAS and BRAF genes is extremely important for proper qualification of colorectal cancer (CRC) patients for therapy with anti-EGFR (epidermal growth factor receptor) monoclonal antibodies. However, data about prevalence of mutations in these genes, in different localizations of CRC tumors, are limited. Material and methods: We examined the frequency of mutations in the KRAS, NRAS and BRAF genes in 500 Caucasian CRC patients (200 women and 300 men, median age 66 years). DNA was isolated from formalin-fixed, paraffin-embedded (FFPE) tissues using a Qiagen QIAamp DNA FFPE-kit. Analysis of mutations was carried out using the KRAS/BRAF, NRAS and BRAF Mutation Analysis Kit for Real-Time PCR (EntroGen) with the Cobas 480 real-time PCR apparatus (Roche Diagnostics).Entities:
Keywords: BRAF; KRAS; NRAS; colorectal cancer
Year: 2021 PMID: 36160343 PMCID: PMC9479594 DOI: 10.5114/aoms/109170
Source DB: PubMed Journal: Arch Med Sci ISSN: 1734-1922 Impact factor: 3.707
Patient characteristics
| Population characteristics | Population, | Lack of mutations, | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Presence of mutations, | Codon | Presence of mutations, | Codon | Codon 600 | |||||||||||
| 12 | 13 | 59 | 61 | 117 | 146 | 12 | 13 | 61 | 146 | Presence of mutations, | |||||
| All | 500 (100) | 266 (100) | 190 (100) | 144 | 28 | 1 | 7 | 2 | 8 | 20 (100) | 4 | 2 | 13 | 1 | 24 (100) |
| Gender: | |||||||||||||||
| Women | 200 (40) | 89 (33.5) | 92 (48.4) | 71 | 12 | 0 | 3 | 2 | 4 | 6 (30) | 2 | 0 | 4 | 0 |
|
| Men |
|
|
| 73 | 16 | 1 | 4 | 0 | 4 |
| 2 | 2 | 9 | 1 | 11 (46) |
| Age [years]: | |||||||||||||||
| ≥ 66 |
|
|
| 76 | 15 | 0 | 5 | 1 | 5 | 8 (40) | 2 | 0 | 5 | 1 |
|
| < 66 | 233 (46.6) | 122 (45.9) | 88 (46.3) | 68 | 13 | 1 | 2 | 1 | 3 |
| 2 | 2 | 8 | 0 | 11 (46) |
| Tumor localization: | |||||||||||||||
| Cecum | 37 (7.4) | 14 (5.3) | 18 (9.4) | 12 | 2 | 0 | 2 | 1 | 1 | 0 (0) | 0 | 0 | 0 | 0 | 5 (21) |
| Ascending colon | 39 (7.8) | 12 (4.5) | 22 (11.6) | 15 | 4 | 0 | 2 | 0 | 1 | 2 (10) | 1 | 0 | 1 | 0 | 3 (12.5) |
| Transverse colon | 17 (3.4) | 5 (1.9) | 8 (4.2) | 5 | 1 | 0 | 1 | 0 | 1 | 0 (0) | 0 | 0 | 0 | 0 | 4 (16.7) |
| Hepatic flexure | 9 (1.8) | 4 (1.5) | 4 (2.1) | 3 | 1 | 0 | 0 | 0 | 0 | 0 (0) | 0 | 0 | 0 | 0 | 1 (4.2) |
| Splenic flexure | 22 (4.4) | 17 (6.4) | 3 (1.6) | 2 | 1 | 0 | 0 | 0 | 0 | 1 (5) | 0 | 0 | 1 | 0 | 1 (4.2) |
| Descending colon | 10 (2) | 4 (1.5) | 5 (2.6) | 5 | 0 | 0 | 0 | 0 | 0 | 1 (5) | 1 | 0 | 0 | 0 | 0 (0) |
| Sigmoid colon | 102 (20.4) | 63 (23.7) | 33 (17.5) | 25 | 6 | 1 | 1 | 0 | 0 | 3 (15) | 0 | 1 | 2 | 0 | 3 (12.5) |
| Rectosigmoid flexure | 53 (10.6) | 34 (12.7) | 16 (8.4) | 12 | 2 | 0 | 0 | 0 | 2 | 2 (10) | 0 | 0 | 2 | 0 | 1 (4.2) |
| Rectum |
|
|
| 43 | 7 | 0 | 0 | 1 | 2 |
| 1 | 1 | 6 | 1 |
|
| Small intestine | 4 (0.8) | 1 (0.4) | 2 (1.1) | 1 | 0 | 0 | 1 | 0 | 0 | 1 (5) | 0 | 0 | 1 | 0 | 0 (0) |
| Ileocecal valve | 4 (0.8) | 2 (0.8) | 2 (1.1) | 2 | 0 | 0 | 0 | 0 | 0 | 0 (0) | 0 | 0 | 0 | 0 | 0 (0) |
| Metastases | 53 (10.6) | 26 (9.8) | 24 (12.5) | 19 | 4 | 0 | 0 | 0 | 1 | 1 (5) | 1 | 0 | 0 | 0 | 2 (8.3) |
Figure 1Frequency of mutations in particular codons of the KRAS gene
Figure 2Frequency of mutations in particular codons of the NRAS gene
Relationship between occurrence of mutations in the KRAS, NRAS and BRAF genes and sex, age, and tumor localization in colorectal cancer (CRC) patients
| Patient characteristics |
| % | Mutation status |
| % |
|---|---|---|---|---|---|
| All | 500 | 100 | Lack of mutation | 266 | 53.2 |
| Presence of mutation | 234 | 46.8 | |||
| Age [years]: | |||||
| ≥ 66 | 267 | 53.4 | Lack of mutation | 144 | 53.9 |
| Presence of mutation | 123 | 46.1 | |||
| < 66 | 233 | 46.6 | Lack of mutation | 122 | 52.4 |
| Presence of mutation | 111 | 47.6 | |||
| 0.72, 0.24 | |||||
| Gender: | |||||
| Women | 200 | 40 | Lack of mutation | 89 | 44.5 |
| Presence of mutation | 111 | 55.5 | |||
| Men | 300 | 60 | Lack of mutation | 177 | 59.0 |
| Presence of mutation | 123 | 41.0 | |||
|
| |||||
| Tumor localization: | |||||
| Small intestine | 4 | 0.8 | Lack of mutation | 1 | 25.00 |
| Presence of mutation | 3 | 75.00 | |||
| Other localizations | 496 | 99.2 | Lack of mutation | 265 | 53.43 |
| Presence of mutation | 231 | 46.57 | |||
| | 0.2564, 1.288 | ||||
| Ileocecal valve | 4 | 0.8 | Lack of mutation | 2 | 50.00 |
| Presence of mutation | 2 | 50.00 | |||
| Other localizations | 496 | 99.2 | Lack of mutation | 264 | 53.23 |
| Presence of mutation | 232 | 46.77 | |||
| | 0.8962, 0.017 | ||||
| Cecum | 37 | 7.4 | Lack of mutation | 14 | 37.84 |
| Presence of mutation | 23 | 62.16 | |||
| Other localizations | 463 | 92.6 | Lack of mutation | 252 | 54.43 |
| Presence of mutation | 211 | 45.57 | |||
| | 0.0516, 3.787 | ||||
| Ascending colon | 39 | 7.8 | Lack of mutation | 12 | 30.77 |
| Presence of mutation | 27 | 69.23 | |||
| Other localizations | 461 | 92.2 | Lack of mutation | 254 | 55.10 |
| Presence of mutation | 207 | 44.90 | |||
| |
| ||||
| Hepatic flexure | 9 | 1.80 | Lack of mutation | 4 | 44.44 |
| Presence of mutation | 5 | 55.56 | |||
| Other localizations | 491 | 98.2 | Lack of mutation | 262 | 53.36 |
| Presence of mutation | 229 | 46.64 | |||
| | 0.5953, 0.282 | ||||
| Transverse colon | 17 | 3.40 | Lack of mutation | 5 | 29.41 |
| Presence of mutation | 12 | 70.59 | |||
| Other localizations | 483 | 96.6 | Lack of mutation | 261 | 54.04 |
| Presence of mutation | 222 | 45.96 | |||
| |
| ||||
| Splenic flexure | 22 | 4.4 | Lack of mutation | 17 | 77.27 |
| Presence of mutation | 5 | 22.73 | |||
| Other localizations | 478 | 95.6 | Lack of mutation | 249 | 52.09 |
| Presence of mutation | 229 | 47.91 | |||
| |
| ||||
| Descending colon | 10 | 2 | Lack of mutation | 4 | 40.00 |
| Presence of mutation | 6 | 60.00 | |||
| Other localizations | 490 | 98 | Lack of mutation | 262 | 53.47 |
| Presence of mutation | 228 | 46.53 | |||
| | 0.3981, 0.714 | ||||
| Sigmoid colon | 102 | 20.4 | Lack of mutation | 63 | 61.76 |
| Presence of mutation | 39 | 38.24 | |||
| Other localizations | 398 | 79.6 | Lack of mutation | 203 | 51.00 |
| Presence of mutation | 195 | 49.00 | |||
| | 0.05202, 3.775 | ||||
| Rectosigmoid flexure | 53 | 10.60 | Lack of mutation | 34 | 64.15 |
| Presence of mutation | 19 | 35.85 | |||
| Other localizations | 447 | 89.4 | Lack of mutation | 232 | 51.90 |
| Presence of mutation | 215 | 48.10 | |||
| | 0.0910, 2.856 | ||||
| Rectum | 150 | 30 | Lack of mutation | 84 | 56.00 |
| Presence of mutation | 66 | 44.00 | |||
| Other localizations | 350 | 70 | Lack of mutation | 182 | 52.00 |
| Presence of mutation | 168 | 48.00 | |||
| | 0.4113, 0.675 | ||||
| Metastases | 53 | 10.60 | Lack of mutation | 26 | 49.05 |
| Presence of mutation | 27 | 50.95 | |||
| Other localizations | 447 | 89.4 | Lack of mutation | 240 | 53.69 |
| Presence of mutation | 207 | 46.31 | |||
| | 0.5224, 0.409 | ||||
| Right side of large intestine | 97 | 20.95 | Lack of mutation | 34 | 35.06 |
| Presence of mutation | 63 | 64.94 | |||
| Left side of large intestine | 366 | 79.05 | Lack of mutation | 205 | 59.25 |
| Presence of mutation | 141 | 40.75 | |||
| |
| ||||
Relationship between occurrence of mutations in the KRAS, NRAS and BRAF genes and tumor localization in colorectal cancer (CRC) patients. *Lack of any examined mutations (wild type)
| Gene status |
| % | Mutations |
| % |
|---|---|---|---|---|---|
| Right side of large intestine | 84 | 20.84 | Lack of mutations* | 34 | 40.48 |
| Presence of mutations | 50 | 59.52 | |||
| Left side of large intestine | 319 | 79.16 | Lack of mutations* | 205 | 64.26 |
| Presence of mutations | 114 | 35.74 | |||
| 0.00007871, 15.589 | |||||
| Right side of large intestine | 36 | 14 | Lack of mutations* | 34 | 94.45 |
| Presence of mutations | 2 | 5.55 | |||
| Left side of large intestine | 221 | 86 | Lack of mutations* | 205 | 92.76 |
| Presence of mutations | 16 | 7.24 | |||
| 0.7133, 0.135 | |||||
| Right side of large intestine | 45 | 17.24 | Lack of mutations* | 34 | 75.56 |
| Presence of mutations | 11 | 24.44 | |||
| Left side of large intestine | 216 | 82.76 | Lack of mutations* | 205 | 94.91 |
| Presence of mutations | 11 | 5.09 | |||
| 0.0000213, 18.069 | |||||
Figure 3Differences in colorectal cancer (CRC) localization in patients without KRAS, NRAS or BRAF gene mutations (A) and in patients with mutations in the KRAS, NRAS or BRAF genes (B)