| Literature DB >> 36140787 |
Sergey Moiseev1,2, Ekaterina Tao1, Alexey Moiseev1,2, Nikolay Bulanov1, Ekaterina Filatova1, Victor Fomin1, Dominique P Germain3,4,5,6.
Abstract
BACKGROUND: Fabry disease (FD, OMIM #301500) is a rare, progressive, X-linked, inherited genetic disease caused by a functional deficiency of lysosomal α-galactosidase, leading to the accumulation of glycosphingolipids in virtually all of the body's cell types and fluids. Patients with rare genetic diseases and non-specific symptoms often experience substantial diagnostic delays, which can negatively impact the prompt initiation of treatment. If FD is not treated specifically, end organ damage (such as chronic renal failure, hypertrophic cardiomyopathy with arrhythmia, and strokes) impairs quality of life and reduces life expectancy. PATIENTS AND METHODS: For 83 consecutive patients with FD referred to the Russian reference center for lysosomal storage diseases, family trees were built and genetic testing (cascade genotyping) was offered to family members.Entities:
Keywords: Fabry disease; cascade genotyping; early diagnosis; family screening; rare diseases
Mesh:
Substances:
Year: 2022 PMID: 36140787 PMCID: PMC9498688 DOI: 10.3390/genes13091619
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Demographic and clinical characteristics of the 83 probands with Fabry disease.
| Parameters | Males ( | Females ( |
|
|---|---|---|---|
| Age, years | 37 [30.5;47.5] | 38 [31;64] | 0.33 |
| Age at symptom onset, years | 10 [6;14] | 12 [9;14] | <0.01 |
| Age at diagnosis, years | 33 [27;45] | 31 [26;41] | 0.38 |
| Diagnostic delay, years | 21 [13;32] | 21 [19;28] | 0.05 |
| Early manifestations, | |||
| Neuropathic pain | 51 (70.8) | 7 (63.6) | 0.43 |
| Angiokeratoma | 35 (48.6) | 3 (27.3) | 0.16 |
| Anhidrosis/hypohidrosis | 47 (65.3) | 3 (27.3) | 0.02 |
| Gastrointestinal disorders | 19 (26.4) | 0 | 0.05 |
| Renal involvement, | |||
| Albuminuria/proteinuria | 62 (86.1) | 9 (81.8) | 0.49 |
| eGFR 15–60 mL/min/1.73 m2 | 4 (5.6) | 2 (18.2) | 0.18 |
| End-stage renal disease | 38 (52.8) | 1 (9.1) | 0.01 |
| Dialysis | 35 (48.6) | 1 (9.1) | 0.01 |
| Kidney transplantation | 3 (4.2) | 0 | 0.65 |
| Cardiac involvement, | |||
| LVH (echocardiography and/or MRI) | 52 (72.2) | 3 (27.3) | 0.01 |
| Clinically significant arrythmias | 8 (11.1) | 2 (18.2) | 0.39 |
| Cerebrovascular disease, | |||
| White matter lesions on MRI | 36/61 (59.0) | 3 (27.3) | 0.05 |
| Stroke | 17 (23.6) | 1 (9.1) | 0.26 |
| Ophthalmological signs, | |||
| Cornea verticillata | 36/51 (70.6) | 6 (75.0) | 0.25 |
| Cataract | 10/51 (19.6) | 1 (9.1) | 0.37 |
| Pathogenic variants, | |||
| Missense | 43 (59.7) | 2 (18.2) | 0.01 |
| Nonsense | 11 (15.2) | 4 (36.4) | 0.11 |
| Other | 18 (25.0) | 5 (27.3) | 0.15 |
| Low or absent AGAL activity, | 64/64 (100.0) | 4/10 (40.0) | <0.01 |
| Median lyso-GL3, ng/mL | 101 | 7.2 | 0.05 |
| Death, | 11 (15.3) | 0 | 0.19 |
Age (in years) is quoted as the median [IQR]; AGAL = α-galactosidase; eGFR = estimated glomerular filtration rate; LVH = left ventricular hypertrophy.
Pedigree analysis in 83 probands with Fabry disease.
| Parameters | Values |
|---|---|
| Total number of family members | 659 |
| Median (range) number of relatives per family | 7 (1–26) |
| Tested for Fabry disease, | 331 (50.3) |
| Not tested for Fabry disease, | 328 (49.7) |
| Poor communication between family members | 234 |
| Refused genetic testing | 30 |
| Testing is pending | 64 |
| Diagnosed with Fabry disease, | 165 (49.8) |
| Males | 51 |
| Females | 114 |
| Children (age < 18) | 30 |
| Symptomatic | 107 |
| Mean ± standard deviation number of affected relatives per proband | 2.0 ± 0.2 |
List of GLA pathogenic variants identified in Russian patients diagnosed with Fabry disease (n = 97 males and 195 females).
| Proband n° | Gender | Age of Diagnosis | A-GAL Activity | Pathogenic | Tested Relatives | Diagnosed | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cDNA Changes | Protein Changes | Type | Consequence | Active Site | CLINVAR ID | |||||||
| One Letter Code | Three Letter Code | |||||||||||
|
| Female | 26 | - | c.679C>T | p.R227* | p.Arg227Ter | SNV | Nonsense | - | 10733 | 2 | 2 |
|
| Female | 35 | - | c.679C>T | p.R227* | p.Arg227Ter | SNV | Nonsense | - | 10733 | 3 | 3 |
|
| Female | 41 | - | c.680G>A | p.R227Q | p.Arg227Gln | SNV | Missense | Yes | 10732 | 9 | 4 |
|
| Female | 31 | - | c.946delG | p.V316* | p.Val316Ter | Small deletion | Stop codon | - | NR | 1 | 1 |
|
| Female | 58 | - | c.101A>G | p.N34S | p.Asn34Ser | SNV | Missense | - | 10724 | 3 | 2 |
|
| Female | 28 | - | c.658C>T | p.R220* | p.Arg220Ter | SNV | Nonsense | No | 167140 | 14 | 5 |
|
| Female | 22 | - | c.334C>T | p.R112C | p.Arg112Cys | SNV | Missense | No | 92550 | 4 | 4 |
|
| Female | 26 | - | c.901C>T | p.R301* | p.Arg301Ter | SNV | Nonsense | - | 92570 | 7 | 0 |
|
| Female | 67 | - | c.1287_1288dup | p.*430fs | - | Duplication | Frameshift | No | NR | 1 | 0 |
|
| Female | 64 | - | c.375delC | p.H125Qfs*5 | p.His125Glnfs*5 | Small deletion | Frameshift | - | NR | 0 | 0 |
|
| Female | 66 | - | c.1000-1G>A | - | - | Consensus Splice Site Mutation | Unknown | - | 222111 | 12 | 4 |
|
| Male | 49 | ↓ | c.901C>T | p.R301* | p.Arg301Ter | SNV | Nonsense | - | 92570 | 3 | 0 |
|
| Male | 44 | ↓↓ | c.337delT | p.F113Ffs*17 | p.Phel113fs*17 | Small deletion | Frameshift | - | NR | 0 | 0 |
|
| Male | 49 | ↓ | c.161T>C | p.L54P | p.Leu54Pro | SNV | Missense | No | NR | 2 | 2 |
|
| Male | 30 | ↓↓ | c.723dupT | p.S241Yfs*8 | p.Ser241Tyrfs*8 | Small insertion | Frameshift | - | 222373 | 5 | 3 |
|
| Male | 33 | ↓ | c.658C>T | p.R220* | p.Arg220Ter | SNV | Nonsense | - | 167140 | 7 | 0 |
|
| Male | 36 | ↓↓ | c.496C>G | p.L166V | p.Leu166Val | SNV | Missense | No | NR | 3 | 0 |
|
| Male | 44 | ↓↓ | c.612G>C | p.W204C | p.Trp204Cys | SNV | Missense | No | NR | 0 | 0 |
|
| Male | 42 | ↓ | c.644A>G | p.N215S | p.Asn215Ser | SNV | Missense | No | 10730 | 5 | 4 |
|
| Male | 45 | ↓↓ | c.19G>T | p.E7* | p.Glu7Ter | SNV | Nonsense | - | 92547 | 1 | 1 |
|
| Male | 31 | ↓ | c.1166C>T | p.P389L | p.Pro389Leu | SNV | Missense | No | NR | 1 | 1 |
|
| Male | 49 | ↓ | c.982G>C | p.G328R | p.Gly328Arg | SNV | Missense | No | 198053 | 0 | 0 |
|
| Male | 52 | ↓ | c.166T>A | p.C56S | p.Cys56Ser | SNV | Missense | No | NR | 1 | 1 |
|
| Male | 23 | ↓ | c.36C>A | p.C12* | p.Cys12Ter | SNV | Nonsense | - | 1323004 | 0 | 0 |
|
| Male | 33 | ↓↓ | - | p.Y134R | p.Tyr134Arg | Missense | Yes | NR | 2 | 1 | |
|
| Male | 42 | ↓ | c.508G>C | p.D170H | p.Asp170His | SNV | Missense | Yes (Nucleophile) | NR | 2 | 1 |
|
| Male | 49 | ↓↓ | c.547G>A | p.G183S | p.Gly183Ser | SNV | Missense | No | 222281 | 1 | 1 |
|
| Male | 37 | ↓↓ | c.717A>G | p.I239M | p.Ile239Met | SNV | Missense | No | 925251 | 12 | 3 |
|
| Male | 18 | ND | c.128G>T | p.G43V | p.Gly43Val | SNV | Missense | No | 928954 | 9 | 2 |
|
| Male | 31 | ND | c.1056C>T | p.Q386* | p.Gln386Ter | SNV | Nonsense | - | NR | 7 | 7 |
|
| Male | 31 | ↓↓ | c.127G>A | p.G43S | p.Gly43Ser | SNV | Missense | No | 290742 | 3 | 3 |
|
| Male | 29 | ↓ | c.818T>C | p.F273S | p.Phe273Ser | SNV | Missense | No | 222425 | 6 | 0 |
|
| Male | 30 | ↓↓ | c.370_377del | p.V124Qfs*14 | p.Val124Glnfs*14 | Small deletion | Frameshift | - | NR | 4 | 1 |
|
| Male | 26 | ↓↓ | c.548-2A>G | - | - | Consensus Splice site Mutation | Unknown | - | 92554 | 11 | 5 |
|
| Male | 16 | ND | c.1085_1098del14 | p.P362Hfs*8 | p.Pro362Hisfs*8 | Small deletion | Frameshift | - | NR | 7 | 1 |
|
| Male | 38 | ↓↓ | c.422C>T | p.T141I | p.Thr141Ile | SNV | Missense | No | 285570 | 2 | 2 |
|
| Male | 29 | ↓↓ | c.550T>G | p.Y184D | p.Tyr184Asp | SNV | Missense | No | 997944 | 6 | 6 |
|
| Male | 14 | ↓↓ | c.539_547del9insC | p.L180_G183del9insC | p.Leu180_Glydel9insC | Small deletion/small insertion | Frameshift | - | NR | 6 | 2 |
|
| Male | 48 | ↓↓ | c.145C>G | p.R49G | p.Arg49Gly | SNV | Missense | - | NR | 1 | 1 |
|
| Male | 18 | ↓↓ | c.513A>G | p.K168R | p.Lys168Arg | SNV | Missense | Yes | NR | 4 | 1 |
|
| Male | 12 | ↓↓ | c.1163T>A | p.L388H | p.Leu388His | SNV | Missense | No | NR | 4 | 1 |
|
| Male | 30 | ↓↓ | c.902G>T | p.R301L | p.Arg301Leu | SNV | Missense | No | NR | 7 | 5 |
|
| Male | 48 | ↓↓ | c.493G>T | p.D165Y | p.Asp165Tyr | SNV | Missense | No | NR | 3 | 0 |
|
| Male | 52 | ↓↓ | c.203T>C | p.L68P | p.Leu68Pro | SNV | Missense | No | NR | 7 | 0 |
|
| Male | 53 | ↓↓ | c.334C>T | p.R112C | p.Arg112Cys | SNV | Missense | No | 92550 | 4 | 4 |
|
| Male | 7 | ND | c.782G>T | p.G261V | p.Gly261Val | SNV | Missense | No | 222387 | 3 | 3 |
|
| Male | 27 | ↓↓ | c.161T>C | p.L54P | p.Leu54Pro | SNV | Missense | No | NR | 11 | 0 |
|
| Male | 15 | ↓↓ | c.334C>T | p.R112C | p.Arg112Cys | SNV | Missense | No | 92550 | 2 | 0 |
|
| Male | 21 | ↓↓ | c.844A>C | p.T282P | p.Thr282Pro | SNV | Missense | No | NR | 4 | 2 |
|
| Male | 54 | ↓↓ | c.109G>A | p.A37T | p.Ala37Thr | SNV | Missense | No | 1324470 | 2 | 0 |
|
| Male | 31 | ↓↓ | c.847C>T | p.Q283* | p.Gln283Ter | SNV | Nonsense | - | 180843 | 9 | 3 |
|
| Male | 30 | ↓↓ | c.1277_1278delAA | p.K426Rfs* | p.Lys426Argfs* | Small deletion | Frameshift | - | 10772 | 3 | 2 |
|
| Male | 42 | ↓ | c.679C>T | p.R227* | p.Arg227Ter | SNV | Nonsense | - | 10733 | 3 | 0 |
|
| Male | 42 | ↓↓ | c.1197G>A | p.W399* | p.Trp399Ter | SNV | Nonsense | - | NR | 2 | 1 |
|
| Male | 48 | ↓↓ | c.1021G>A | p.E341K | p.Glu341Lys | SNV | Missense | No | 222125 | 14 | 9 |
|
| Male | 30 | ND | c.444T>G | p.S148R | p.Ser148Arg | SNV | Missense | No | 633251 | 7 | 5 |
|
| Male | ? | ↓↓ | c.572T>A | p.L191Q | p.Leu191Gln | SNV | Missense | No | NR | 0? | 0? |
|
| Male | 52 | ↓↓ | c.1072_1074delGAG | p.E358del | p.Glu358del | Small in frame deletion | Unknown | - | 180844 | 1 | 0 |
|
| Male | 31 | ↓↓ | c.442_450delAGTTTTGGA | p.S148_G150del | p.Ser148_Gly150del | Small in frame deletion | Unknown | - | NR | 8 | 5 |
|
| Male | 19 | ↓↓ | c.804A>C | p.L268F | p.Leu268Phe | SNV | Missense | No | NR | 1 | 1 |
|
| Male | 51 | ↓ | c.717A>G | p.I239M | p.Ile239Met | SNV | Missense | No | 925251 | 2 | 1 |
|
| Male | 50 | ↓ | c.758T>C | p.I253T | p.Ile253Thr | SNV | Missense | No | 180021 | 2 | 1 |
|
| Male | 36 | ↓↓ | c.1133G>A | p.C378Y | p.Cys378Tyr | SNV | Missense | No | NR | 17 | 12 |
|
| Male | 31 | ↓ | c.786delG | p.W262* | p.Trp262Ter | Small deletion | Stop codon | - | NR | 3 | 3 |
|
| Male | 15 | ↓↓ | c.521G>A | p.C174Y | p.Cys174Tyr | SNV | Missense | No | NR | 4 | 3 |
|
| Male | 32 | ND | c.227T>C | p.M76T | p.Met76Thr | SNV | Missense | No | NR | 5 | 4 |
|
| Male | 41 | ↓ | c.1025G>A | p.R342Q | p.Arg342Gln | SNV | Missense | No | 10742 | 5 | 1 |
|
| Male | 54 | ↓↓ | c.658C>T | p.R220* | p.Arg220Ter | SNV | Nonsense | - | 167140 | 2 | 2 |
|
| Male | 20 | ↓ | c.949del | p.A350Vfs*2 | p.Ala350Valfs*2 | Small deletion | Frameshift | - | NR | 3 | 3 |
|
| Male | 20 | ↓↓ | c.658C>T | p.R220* | p.Arg220Ter | SNV | Nonsense | - | 167140 | 3 | 0 |
|
| Male | 43 | ↓↓ | c.901C>T | p.R301* | p.Arg301Ter | SNV | Nonsense | - | 92570 | 1 | 1 |
|
| Male | 38 | ↓↓ | c.1049delC | p.A350Vfs*2 | p.Ala350Valfs*2 | Small deletion | Frameshift | - | 92538 | 2 | 2 |
|
| Male | 24 | ↓↓ | c.1033_1034del | p.S345Rfs*29 | p.Ser345Argfs*29 | Small deletion | Frameshift | - | 92538 | 0 | 0 |
|
| Male | 48 | ↓↓ | c.983G>C | p.G328A | p.Gly328Ala | SNV | Missense | - | 10740 | 1 | 1 |
|
| Male | 46 | ↓↓ | c.644A>G | p.N215S | p.Asn215Ser | SNV | Missense | No | 10730 | 1 | 1 |
|
| Male | 39 | ↓↓ | c.869T>C | p.M290T | p.Met290Thr | SNV | Missense | No | 684855 | 1 | 3 |
|
| Male | 30 | ↓↓ | c.551A>G | p.Y184C | p.Tyr184Cys | SNV | Missense | No | NR | 2 | 2 |
|
| Male | 28 | ↓↓ | c.614C>G | p.P205R | p.Pro205Arg | SNV | Missense | No | NR | 1 | 1 |
|
| Male | 17 | ND | c.44C>A | p.A15E | p.Ala15Glu | SNV | Missense | No | NR | 1 | 1 |
|
| Male | 57 | ↓↓ | c.269G>A | p.C90Y | p.Cys90Tyr | SNV | Missense | No | NR | 2 | 2 |
|
| Male | 15 | ND | c.680G>A | p.R227Q | p.Arg227Gln | SNV | Missense | Yes | 10732 | 6 | 4 |
|
| Male | 34 | ↓↓ | c.671A>G | p.N224S | p.Asn224Ser | SNV | Missense | No | 222365 | 3 | 2 |
|
| Male | 25 | ↓ | c.269G>A | p.C90Y | p.Cys90Tyr | SNV | Missense | No | NR | 2 | 0 |
* For Missense variant only. ND: not done, ↓: significantly below cut-off level, ↓↓: zero or close to zero. NR = not reported.