| Literature DB >> 36140746 |
Kai Yang1, Yan Liu1, Jue Wu2, Jing Zhang3, Hua-Ying Hu4, You-Sheng Yan1, Wen-Qi Chen3, Shu-Fa Yang1, Li-Juan Sun5, Yong-Qing Sun1,5, Qing-Qing Wu5, Cheng-Hong Yin1.
Abstract
INTRODUCTION: Osteogenesis imperfecta (OI) is a rare mendelian skeletal dysplasia with autosomal dominant or recessive inheritance pattern, and almost the most common primary osteoporosis in prenatal settings. The diversity of clinical presentation and genetic etiology in prenatal OI cases presents a challenge to counseling yet has seldom been discussed in previous studies.Entities:
Keywords: CANT1; COL1A1; COL1A2; Osteogenesis imperfecta; RMRP
Mesh:
Substances:
Year: 2022 PMID: 36140746 PMCID: PMC9498730 DOI: 10.3390/genes13091578
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Clinical information of the ten recruited cases.
| Case No. | Maternal Age (Years) | Gestational Age with Initial Diagnosis * | Clinical History * | Fetal Sample for WES |
|---|---|---|---|---|
| 1 | 28 | 23W4D | G1P0; Ultrasound examination revealed that the long bones of the fetus’s limbs were short and curved; Fetus aborted at 24W1D. | Umbilical cord |
| 2 | 35 | 22W6D | G1P0; Fetal femur, tibia and fibula were initially found to be short and curved; Fetus aborted at 23W5D. | Umbilical cord |
| 3 | 26; 27 (two pregnancies) | 22W; 20W6D (two pregnancies) | G3P0; Two affected pregnancies: (1) The right femur was initially found to be “telephone like” at 22W; Both femurs were identified as short and curved at 24W; Fetus aborted at 25W; (2) Both femurs were identified as short and curved at 20W6D; Fetus aborted at 32W; (3) Still pregnant before submission. | Amniotic fluid; Umbilical cord |
| 4 | 36 | 20W1D | G2P1 (A normal daughter at 5years old); Limb long bones short and curved, some of the ribs recessed inward at 20W1D; Fetus aborted at 23W. | Umbilical cord |
| 5 | 26 | 20W2D | G1P0; Limb long bones short and curved at 20W2D; Fetus aborted at 25W; Autopsy revealed blue staining of the sclera and a thin, soft skull. | Umbilical cord |
| 6 | 38 | 20W5D | G2P0 (One miscarriage 5 years ago); The fetus was found to have short and curved limb long bones and left foot varus at 20W5D; Fetus aborted at 23W3D. | Umbilical cord |
| 7 | 31 | 16W | G1P0; The fetus was found presenting with short limb long bones, dysplasia of tibiofibula and ulnar flexure, poor ossification of the skull, abnormal knee bending, bilateral short choroid plexusat 16W; Fetus aborted at 17W1D. | Umbilical cord; Skin tissue |
| 8 | 35 | 13W4D | G1P0; NT (nuchal translucency) thickening (6.0 mm), anasarca, limb long bones short and curved, abnormal ankle joint and foot posture at 13W4D; Fetus aborted at 17W. | Amniotic fluid; Umbilical cord |
| 9 | 30 | 16W1D | G2P0; Limb long bones short at 16W1D; Definitive ultrasound diagnosis was made at 22 weeks; Fetus aborted at 23W. The next pregnancy was via pre-implantation diagnosis and is now with normal phenotype at 30W. | Amniotic fluid |
| 10 | 29 | 20W4D | G1P0; Limb long bones short and curved at 20W4D; Fetus aborted at 23W. | Umbilical cord |
* W: weeks; D: days; G: gravida; P: para; A: abortus.
Figure 1The representative clinical images of fetuses in this study. (A) The left humerus (left image) and right femur (right image) of fetus in Case 1 appeared curved at angled. (B) The X-ray image of induced fetus in Case 2 showed typical OI indications (short and curved femur, tibia and fibula). (C) Case 3: left and middle, the 3D reconstruction of the curved femur and the in utero curve of femur of the second fetus; right, the X-ray image of the first induced fetus in this family. (D) The X-ray image of induced fetus in Case 5. (E) The X-ray image of induced fetus in Case 6. (F) The X-ray image (left) and appearance (middle and right) of induced fetus in Case 7. (G) The X-ray images and appearance (farthest to the right) of induced fetus in Case 8. (H) The appearance of induced fetus in Case 9. Note: In accordance with the wishes of the affected families, clinical images of Cases 4 and 10 are not shown.
Figure 2The pedigree diagrams of Cases 1–6 (Families 1–6) and the variants in collagen genes (COL1A1/2) in Sanger sequencing form and their corresponding carrying status in each family. Note: Solid shapes represent mutation carriers; the arrow points to the probands; the diagonal line means dead.
Figure 3The pedigree diagrams of Cases 7–10 (Families 7–10) and the variants in collagen genes (COL1A1/2), CANT1 gene, and RMRP gene in Sanger sequencing or Bam form, and their corresponding carrying status in each family. Note: Solid shapes represent mutation carriers; the arrow points to the probands; the diagonal line means dead.
Information of the genetic variations identified in this study.
| Case No. | Gene * | DNA Variation | Protein Variation | HGMD * Rating (PMID) | Frequency in Three Databases * | Revel Prediction * | Pathogenicity Level * (Evidences) |
|---|---|---|---|---|---|---|---|
| 1 |
| c.1678G>A | p.Gly560Ser | DM (15741671) | -; -; - | 0.987 | P (pp2+pm2+pm5_strong+ |
| 2 |
| c.2101G>A | p.Gly701Ser | DM (17078022) | -; -; - | 0.991 | P (pp2+pm2+pm5_strong |
| 3 |
| c.3557C>T | p.Pro1186Leu | / | -; -; - | 0.555 | VUS (pp2+pm2+pm5) |
| 4 |
| c.856G>C | p.Gly286Arg | / | -; -; - | 0.988 | LP(pm2+pm5_strong+pp3) |
| 5 |
| c.1072G>A | p.Gly358Ser | DM (9240878) | -; -; - | 0.981 | LP(pm2+pm5_strong+pp3) |
| 6 |
| c.2198G>T | p.Gly733Val | DM (25086671) | -; -; - | 0.993 | VUS (pm2+pm5+pp3) |
| 7 |
| c.2295+1G>C | / | -; -; - | / | LP(pvs1+pm2) | |
|
| c.556G>A | p.Val186Ile | / | 0.001;0.002082;0.0029362 | 0.272 | VUS (pm2) | |
|
| c.-220G>A | / | / | -; -; - | / | VUS | |
| 8 |
| c.2300G>T | p.Gly767Val | / | -; -; - | 1.000 | LP(pp2+pm2+pm5+pp3) |
|
| n.39A>G | / | / | -; -; - | / | VUS | |
|
| n.23C>T | / | / | -; -; - | / | VUS | |
| 9 |
| c.2783G>A | p.Gly928Asp | / | -; -; - | 0.983 | LP (pm2+pp3) |
| 10 |
| c.3052G>A | p.Gly1018Ser | / | -; -; - | 0.960 | VUS (pm2+pp3+pm6) |
* Gene transcripts No.: COL1A1, NM_000088.3; COL1A2, NM_000089.3; CANT1, NM_001159773; RMRP, NR_003051.3; HGMD: Human Gene Mutation Database (Professional Version 2021.10); PMID: PubMed ID (https://pubmed.ncbi.nlm.nih.gov; accessed on 27 September 2020); Three databases: 1000g2015aug_eas (https://www.internationalgenome.org; accessed on 25 September 2020);ExAC_EAS (http://exac.broadinstitute.org; accessed on 25 September 2020); gnomAD_exome_EAS (http://gnomad.broadinstitute.org; accessed on 25 September 2020); Revel: An ensemble method for predicting the pathogenicity of missense variants on the basis of individual tools: MutPred, FATHMM, VEST, PolyPhen, SIFT, PROVEAN, MutationAssessor, MutationTaster, LRT, GERP, SiPhy, phyloP, and phastCons (http://dx.doi.org/10.1016/j.ajhg.2016.08.016); Pathogenicity level rating: By ACMG (The American College of Medical Genetics and Genomics); P: pathogenic; LP: likely pathogenic; VUS: variants of unknown significance.
Figure 4The evolutionaryconservatism of AA residues affected by nine missense variants in the COL1A1/2 genes identified in this study. (A) Conservatism of the residues in COL1A1 affected by missense variants detected in this study. (B) Conservatism of the residues in COL1A2 affected by missense variants detected in this study.