Literature DB >> 31414283

Mutation spectrum of COL1A1/COL1A2 screening by high-resolution melting analysis of Chinese patients with osteogenesis imperfecta.

Mingyan Ju1, Xue Bai2, Tianke Zhang3, Yunshou Lin4, Li Yang4, Huaiyu Zhou4, Xiaoli Chang2, Shizhen Guan2, Xiuzhi Ren5, Keqiu Li1, Yi Wang2, Guang Li6.   

Abstract

High-resolution melting (HRM) analysis has been shown to be a time-saving method for the screening of genetic variants. To increase the precision of the diagnosis of osteogenesis imperfecta (OI), we used HRM to explore COL1A1/COL1A2 mutations in 87 Chinese OI patients and to perform population-based studies of the relationships between their genotypes and phenotypes. Peripheral blood samples were collected from the 87 non-consanguineous probands. The coding regions and exon boundaries of COL1A1/COL1A2 were detected by HRM and confirmed by Sanger sequencing. The functional effects of mutations were predicted through bioinformatic tools. Mutations were detected in 70.3% of familial cases and 40% of sporadic cases (p < 0.01). Compared with COL1A1 mutations, patients with COL1A2 mutations were more prone to severe phenotypes. Helical mutations (caused by substitution of the glycine within the Gly-X-Y triplet domain) were more likely to occur in patients with type III and IV (p < 0.05). Haploinsufficiency mutations (caused by frameshift, nonsense, and splice-site mutations) appeared more frequently in patients with type I (p < 0.05). Compared with the Sanger sequencing and whole exome sequencing (WES), HRM was found to reduce total costs by 78%- 80% in patients who had a positive HRM separate melting curve. Our findings suggest that HRM would greatly benefit small and understaffed hospitals and laboratories, and would facilitate the accurate diagnosis and early treatment of OI in remote and less developed regions.

Entities:  

Keywords:  COL1A1/COL1A2; Chinese; HRM; Osteogenesis imperfecta; Phenotypes

Mesh:

Substances:

Year:  2019        PMID: 31414283     DOI: 10.1007/s00774-019-01039-3

Source DB:  PubMed          Journal:  J Bone Miner Metab        ISSN: 0914-8779            Impact factor:   2.626


  30 in total

1.  Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis.

Authors:  Gudrun H Reed; Carl T Wittwer
Journal:  Clin Chem       Date:  2004-08-12       Impact factor: 8.327

2.  Mutation analysis of COL1A1 and COL1A2 in patients diagnosed with osteogenesis imperfecta type I-IV.

Authors:  Rebecca Pollitt; Robert McMahon; Janice Nunn; Robert Bamford; Amal Afifi; Nicholas Bishop; Ann Dalton
Journal:  Hum Mutat       Date:  2006-07       Impact factor: 4.878

Review 3.  Next-generation sequencing: from basic research to diagnostics.

Authors:  Karl V Voelkerding; Shale A Dames; Jacob D Durtschi
Journal:  Clin Chem       Date:  2009-02-26       Impact factor: 8.327

4.  Next-generation sequencing: methodology and application.

Authors:  Ayman Grada; Kate Weinbrecht
Journal:  J Invest Dermatol       Date:  2013-08       Impact factor: 8.551

5.  Technology: The $1,000 genome.

Authors:  Erika Check Hayden
Journal:  Nature       Date:  2014-03-20       Impact factor: 49.962

6.  Chain conformation in the collagen molecule.

Authors:  R D Fraser; T P MacRae; E Suzuki
Journal:  J Mol Biol       Date:  1979-04-15       Impact factor: 5.469

7.  Mutational spectrum of type I collagen genes in Korean patients with osteogenesis imperfecta.

Authors:  Kwang-Soo Lee; Hae-Ryong Song; Tae-Joon Cho; Hyon J Kim; Tae-Mi Lee; Hyun-Seok Jin; Hyun-Young Park; Seongman Kang; Sung-Chul Jung; Soo Kyung Koo
Journal:  Hum Mutat       Date:  2006-06       Impact factor: 4.878

8.  Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons.

Authors:  Michael Liew; Robert Pryor; Robert Palais; Cindy Meadows; Maria Erali; Elaine Lyon; Carl Wittwer
Journal:  Clin Chem       Date:  2004-07       Impact factor: 8.327

Review 9.  Osteogenesis imperfecta.

Authors:  Francis H Glorieux
Journal:  Best Pract Res Clin Rheumatol       Date:  2008-03       Impact factor: 4.098

Review 10.  Osteogenesis imperfecta: clinical diagnosis, nomenclature and severity assessment.

Authors:  F S Van Dijk; D O Sillence
Journal:  Am J Med Genet A       Date:  2014-04-08       Impact factor: 2.802

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  3 in total

1.  Exome Sequencing Reveals a Phenotype Modifying Variant in ZNF528 in Primary Osteoporosis With a COL1A2 Deletion.

Authors:  Sini Skarp; Ji-Han Xia; Gong-Hong Wei; Minna Männikkö; Qin Zhang; Marika Löija; Alice Costantini; Lloyd W Ruddock; Outi Mäkitie
Journal:  J Bone Miner Res       Date:  2020-08-26       Impact factor: 6.741

Review 2.  The diagnostic protocol for hereditary spherocytosis-2021 update.

Authors:  Yangyang Wu; Lin Liao; Faquan Lin
Journal:  J Clin Lab Anal       Date:  2021-10-24       Impact factor: 2.352

3.  Prenatal Cases Reflect the Complexity of the COL1A1/2 Associated Osteogenesis Imperfecta.

Authors:  Kai Yang; Yan Liu; Jue Wu; Jing Zhang; Hua-Ying Hu; You-Sheng Yan; Wen-Qi Chen; Shu-Fa Yang; Li-Juan Sun; Yong-Qing Sun; Qing-Qing Wu; Cheng-Hong Yin
Journal:  Genes (Basel)       Date:  2022-09-02       Impact factor: 4.141

  3 in total

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