Literature DB >> 36130271

Intrinsically disordered regions of tristetraprolin and DCP2 directly interact to mediate decay of ARE-mRNA.

Vincent D Maciej1, Nevena Mateva1, Juliane Schwarz2,3, Theresa Dittmers1, Megha Mallick1, Henning Urlaub2,3, Sutapa Chakrabarti1.   

Abstract

The RNA-binding protein tristetraprolin (TTP) is a potent activator of mRNA decay, specifically for transcripts bearing AU-rich elements (AREs) in their 3'-untranslated regions. TTP functions as a mediator for mRNA decay by interacting with the decay machinery and recruiting it to the target ARE-mRNA. In this study, we report a weak, but direct interaction between TTP and the human decapping enzyme DCP2, which impacts the stability of ARE transcripts. The TTP-DCP2 interaction is unusual as it involves intrinsically disordered regions (IDRs) of both binding partners. We show that the IDR of DCP2 has a propensity for oligomerization and liquid-liquid phase separation in vitro. Binding of TTP to DCP2 leads to its partitioning into phase-separated droplets formed by DCP2, suggesting that molecular crowding might facilitate the weak interaction between the two proteins and enable assembly of a decapping-competent mRNA-protein complex on TTP-bound transcripts in cells. Our studies underline the role of weak interactions in the cellular interaction network and their contribution towards cellular functionality.
© The Author(s) 2022. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2022        PMID: 36130271      PMCID: PMC9561381          DOI: 10.1093/nar/gkac797

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  46 in total

1.  Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d.

Authors:  Brian P Hudson; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright
Journal:  Nat Struct Mol Biol       Date:  2004-02-08       Impact factor: 15.369

2.  Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping.

Authors:  Martin Fenger-Grøn; Christy Fillman; Bodil Norrild; Jens Lykke-Andersen
Journal:  Mol Cell       Date:  2005-12-22       Impact factor: 17.970

Review 3.  An Ancient Family of RNA-Binding Proteins: Still Important!

Authors:  Melissa L Wells; Lalith Perera; Perry J Blackshear
Journal:  Trends Biochem Sci       Date:  2017-01-14       Impact factor: 13.807

4.  P-Body Purification Reveals the Condensation of Repressed mRNA Regulons.

Authors:  Arnaud Hubstenberger; Maïté Courel; Marianne Bénard; Sylvie Souquere; Michèle Ernoult-Lange; Racha Chouaib; Zhou Yi; Jean-Baptiste Morlot; Annie Munier; Magali Fradet; Maëlle Daunesse; Edouard Bertrand; Gérard Pierron; Julien Mozziconacci; Michel Kress; Dominique Weil
Journal:  Mol Cell       Date:  2017-09-28       Impact factor: 17.970

5.  Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

Authors:  Robert McCoy Vernon; Paul Andrew Chong; Brian Tsang; Tae Hun Kim; Alaji Bah; Patrick Farber; Hong Lin; Julie Deborah Forman-Kay
Journal:  Elife       Date:  2018-02-09       Impact factor: 8.140

6.  Production of soluble MHC class II proteins with covalently bound single peptides.

Authors:  H Kozono; J White; J Clements; P Marrack; J Kappler
Journal:  Nature       Date:  1994-05-12       Impact factor: 49.962

7.  Analysis of P-body assembly in Saccharomyces cerevisiae.

Authors:  Daniela Teixeira; Roy Parker
Journal:  Mol Biol Cell       Date:  2007-04-11       Impact factor: 4.138

8.  Changes in conformational equilibria regulate the activity of the Dcp2 decapping enzyme.

Authors:  Jan Philip Wurm; Iris Holdermann; Jan H Overbeck; Philipp H O Mayer; Remco Sprangers
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

9.  GIGYF1/2 proteins use auxiliary sequences to selectively bind to 4EHP and repress target mRNA expression.

Authors:  Daniel Peter; Ramona Weber; Felix Sandmeir; Lara Wohlbold; Sigrun Helms; Praveen Bawankar; Eugene Valkov; Cátia Igreja; Elisa Izaurralde
Journal:  Genes Dev       Date:  2017-07-11       Impact factor: 11.361

10.  Recruitment of the 4EHP-GYF2 cap-binding complex to tetraproline motifs of tristetraprolin promotes repression and degradation of mRNAs with AU-rich elements.

Authors:  Rui Fu; Myanna T Olsen; Kristofor Webb; Eric J Bennett; Jens Lykke-Andersen
Journal:  RNA       Date:  2016-01-13       Impact factor: 4.942

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