Literature DB >> 36129290

Draft Genome Sequences of Robbsia andropogonis Isolated from Sorghum bicolor Exhibiting Bacterial Leaf Stripe in Australia.

Anthony J Young1, Henry W G Birt2, Robert D Hoelzle2, Paul G Dennis2.   

Abstract

Robbsia andropogonis causes leaf spots, streaks, or stripes on a wide range of commercially important crops. Here, we present the draft genome sequences of two isolates of R. andropogonis sourced from Sorghum bicolor displaying symptoms of bacterial leaf stripe disease in Australia.

Entities:  

Year:  2022        PMID： 36129290      PMCID： PMC9583791          DOI： 10.1128/mra.00247-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  11 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  First Report of Burkholderia andropogonis Causing Leaf Spots of Bougainvillea sp. in Hong Kong and Clover in Canada.

Authors:  X Li; S H De Boer
Journal:  Plant Dis       Date:  2005-10       Impact factor: 4.438

3.  GenBank.

Authors:  Eric W Sayers; Mark Cavanaugh; Karen Clark; James Ostell; Kim D Pruitt; Ilene Karsch-Mizrachi
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

4.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

5.  High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.

Authors:  Chirag Jain; Luis M Rodriguez-R; Adam M Phillippy; Konstantinos T Konstantinidis; Srinivas Aluru
Journal:  Nat Commun       Date:  2018-11-30       Impact factor: 14.919

6.  GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.

Authors:  Pierre-Alain Chaumeil; Aaron J Mussig; Philip Hugenholtz; Donovan H Parks
Journal:  Bioinformatics       Date:  2019-11-15       Impact factor: 6.937

7.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

9.  Untargeted Metabolomics Reveal Defensome-Related Metabolic Reprogramming in Sorghum bicolor against Infection by Burkholderia andropogonis.

Authors:  Charity R Mareya; Fidele Tugizimana; Lizelle A Piater; Ntakadzeni E Madala; Paul A Steenkamp; Ian A Dubery
Journal:  Metabolites       Date:  2019-01-02

10.  Molecular, Phenotypical, and Host-Range Characterization of Robbsia andropogonis Strains Isolated from Bougainvillea spp. in Mexico.

Authors:  Oscar Morales-Galván; Deepti Nigam; Anthony J Young; Alexander N Ignatov; Dimas Mejía-Sánchez; Luis Fernando Flores-López
Journal:  Plant Dis       Date:  2022-02-05       Impact factor: 4.438
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