Literature DB >> 31665464

GenBank.

Eric W Sayers1, Mark Cavanaugh1, Karen Clark1, James Ostell1, Kim D Pruitt1, Ilene Karsch-Mizrachi1.   

Abstract

GenBank® (www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public database that contains over 6.25 trillion base pairs from over 1.6 billion nucleotide sequences for 450 000 formally described species. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. Recent updates include a new version of Genome Workbench that supports GenBank submissions, new submission wizards for viral genomes, enhancements to BankIt and improved handling of taxonomy for sequences from pathogens. Published by Oxford University Press on behalf of Nucleic Acids Research 2019.

Entities:  

Mesh：

Year:  2020        PMID： 31665464      PMCID： PMC7145611          DOI： 10.1093/nar/gkz956

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  5 in total

1.  BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

Authors:  Tanya Barrett; Karen Clark; Robert Gevorgyan; Vyacheslav Gorelenkov; Eugene Gribov; Ilene Karsch-Mizrachi; Michael Kimelman; Kim D Pruitt; Sergei Resenchuk; Tatiana Tatusova; Eugene Yaschenko; James Ostell
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

2.  Database Resources of the National Center for Biotechnology Information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

3.  Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI.

Authors:  Stacy Ciufo; Sivakumar Kannan; Shobha Sharma; Azat Badretdin; Karen Clark; Seán Turner; Slava Brover; Conrad L Schoch; Avi Kimchi; Michael DiCuccio
Journal:  Int J Syst Evol Microbiol       Date:  2018-05-24       Impact factor: 2.747

4.  Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.

Authors:  Ruth E Timme; Hugh Rand; Martin Shumway; Eija K Trees; Mustafa Simmons; Richa Agarwala; Steven Davis; Glenn E Tillman; Stephanie Defibaugh-Chavez; Heather A Carleton; William A Klimke; Lee S Katz
Journal:  PeerJ       Date:  2017-10-06       Impact factor: 2.984

5.  GenBank.

Authors:  Eric W Sayers; Mark Cavanaugh; Karen Clark; James Ostell; Kim D Pruitt; Ilene Karsch-Mizrachi
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971
  5 in total
  105 in total

1.  Molecular storytelling for online structural biology outreach and education.

Authors:  David S Goodsell; Shuchismita Dutta; Maria Voigt; Christine Zardecki
Journal:  Struct Dyn       Date:  2021-03-05       Impact factor: 2.920

2.  IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses.

Authors:  Simon Roux; David Páez-Espino; I-Min A Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T B K Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y Neches; Tanja Woyke; Natalia N Ivanova; Emiley A Eloe-Fadrosh; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

3.  Comparison of Propionibacterium genomes: CRISPR-Cas systems, phage/plasmid diversity, and insertion sequences.

Authors:  Özge Kahraman-Ilıkkan
Journal:  Arch Microbiol       Date:  2022-06-28       Impact factor: 2.552

4.  A phylogenetic overview of the Hydnaceae (Cantharellales, Basidiomycota) with new taxa from China.

Authors:  Ting Cao; Ya-Ping Hu; Jia-Rui Yu; Tie-Zheng Wei; Hai-Sheng Yuan
Journal:  Stud Mycol       Date:  2021-12-23       Impact factor: 16.097

5.  Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA.

Authors:  Patrik Inderbitzin; Barbara Robbertse; Conrad L Schoch
Journal:  Phytobiomes J       Date:  2020-03-23

6.  PhasiRNAnalyzer: an integrated analyser for plant phased siRNAs.

Authors:  Yuhan Fei; Jiejie Feng; Rui Wang; Baoyi Zhang; Hongsheng Zhang; Ji Huang
Journal:  RNA Biol       Date:  2021-02-04       Impact factor: 4.652

7.  CheckV assesses the quality and completeness of metagenome-assembled viral genomes.

Authors:  Stephen Nayfach; Antonio Pedro Camargo; Frederik Schulz; Emiley Eloe-Fadrosh; Simon Roux; Nikos C Kyrpides
Journal:  Nat Biotechnol       Date:  2020-12-21       Impact factor: 54.908

8.  Analysis of Probiotic Bacteria Genomes: Comparison of CRISPR/Cas Systems and Spacer Acquisition Diversity.

Authors:  Özge Kahraman Ilıkkan
Journal:  Indian J Microbiol       Date:  2021-08-12       Impact factor: 2.461

9.  The Conservation of Chloroplast Genome Structure and Improved Resolution of Infrafamilial Relationships of Crassulaceae.

Authors:  Hong Chang; Lei Zhang; Huanhuan Xie; Jianquan Liu; Zhenxiang Xi; Xiaoting Xu
Journal:  Front Plant Sci       Date:  2021-07-01       Impact factor: 5.753

10.  GUNC: detection of chimerism and contamination in prokaryotic genomes.

Authors:  Askarbek Orakov; Anthony Fullam; Luis Pedro Coelho; Supriya Khedkar; Damian Szklarczyk; Daniel R Mende; Thomas S B Schmidt; Peer Bork
Journal:  Genome Biol       Date:  2021-06-13       Impact factor: 13.583
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.