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Literature DB >> 36129275

Complete Genome Sequence of NAH7-Harboring Pseudomonas putida Strain G7.

Abstract

Pseudomonas putida G7 (111) is an aerobic bacterial species discovered in soil known to harbor the naphthalene-degrading NAH7 plasmid. Here, we report the genome sequence of G7. The genome was assembled by Nanopore sequencing and consisted of a chromosome of 6.4 Mbp with a G+C content of 62.13%.

Entities: Chemical

Year: 2022 PMID： 36129275 PMCID： PMC9584282 DOI： 10.1128/mra.00394-22

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

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References

11 in total

1. Quantification of chemotaxis to naphthalene by Pseudomonas putida G7.

Authors: R B Marx; M D Aitken
Journal: Appl Environ Microbiol Date: 1999-07 Impact factor: 4.792

2. Chemotaxis of Pseudomonas spp. to the polyaromatic hydrocarbon naphthalene.

Authors: A C Grimm; C S Harwood
Journal: Appl Environ Microbiol Date: 1997-10 Impact factor: 4.792

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors: Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal: Bioinformatics Date: 2015-06-09 Impact factor: 6.937

4. Assembly of long, error-prone reads using repeat graphs.

Authors: Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal: Nat Biotechnol Date: 2019-04-01 Impact factor: 54.908

5. QUAST: quality assessment tool for genome assemblies.

Authors: Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal: Bioinformatics Date: 2013-02-19 Impact factor: 6.937

6. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase.

Authors: Masahiro Sota; Hirokazu Yano; Akira Ono; Ryo Miyazaki; Hidenori Ishii; Hiroyuki Genka; Eva M Top; Masataka Tsuda
Journal: J Bacteriol Date: 2006-06 Impact factor: 3.490

Complete Genome Sequence of NAH7-Harboring Pseudomonas putida Strain G7.

1. Quantification of chemotaxis to naphthalene by Pseudomonas putida G7.

2. Chemotaxis of Pseudomonas spp. to the polyaromatic hydrocarbon naphthalene.

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

4. Assembly of long, error-prone reads using repeat graphs.

5. QUAST: quality assessment tool for genome assemblies.

6. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase.

Review 7. Properties affecting transfer and expression of degradative plasmids for the purpose of bioremediation.

8. Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid.

9. MultiQC: summarize analysis results for multiple tools and samples in a single report.

10. NCBI prokaryotic genome annotation pipeline.