Marco Fusè1, Giovanna Longhi1,2, Giuseppe Mazzeo1, Stefano Stranges3,4, Francesca Leonelli5, Giorgia Aquila5, Enrico Bodo5, Bruno Brunetti6, Carlo Bicchi7, Cecilia Cagliero7, Julien Bloino8, Sergio Abbate1,2. 1. Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy. 2. Istituto Nazionale di Ottica (INO), CNR, Research Unit of Brescia, c/o CSMT, VIA Branze 45, 25123 Brescia, Italy. 3. Dipartimento di Chimica e Tecnologia del Farmaco, Università"La Sapienza", P.le A. Moro 5, 00185 Roma, Italy. 4. IOM-CNR, Laboratorio TASC, Basovizza, 34149 Trieste, Italy. 5. Dipartimento di Chimica, Università"La Sapienza", P.le A. Moro 5, 00185 Roma, Italy. 6. ISMN-CNR, Università La Sapienza, P.le A. Moro 5, 00185 Roma, Italy. 7. Dipartimento di Scienza e Tecnologia del Farmaco, Università degli Studi di Torino, Via Pietro Giuria 9,00124 Torino, Italy. 8. Scuola Normale Superiore, Piazza dei Cavalieri, 56125, Pisa, Italy.
Abstract
Vibrational circular dichroism (VCD) spectra and the corresponding IR spectra of the chiral isomers of methyloxirane and of methylthiirane have been reinvestigated, both experimentally and theoretically, with particular attention to accounting for anharmonic corrections, as calculated by the GVPT2 approach. De novo recorded VCD spectra in the near IR (NIR) range regarding CH-stretching overtone transitions, together with the corresponding NIR absorption spectra, were also considered and accounted for, both with the GVPT2 and with the local mode approaches. Comparison of the two methods has permitted us to better describe the nature of active "anharmonic" modes in the two molecules and the role of mechanical and electrical anharmonicity in determining the intensities of VCD and IR/NIR data. Finally, two nonstandard IR/NIR regions have been investigated: the first one about ≈2000 cm-1, involving mostly two-quanta bending mode transitions, the second one between 7000 and 7500 cm-1 involving three-quanta transitions containing CH-stretching overtones and HCC/HCH bending modes.
Vibrational circular dichroism (VCD) spectra and the corresponding IR spectra of the chiral isomers of methyloxirane and of methylthiirane have been reinvestigated, both experimentally and theoretically, with particular attention to accounting for anharmonic corrections, as calculated by the GVPT2 approach. De novo recorded VCD spectra in the near IR (NIR) range regarding CH-stretching overtone transitions, together with the corresponding NIR absorption spectra, were also considered and accounted for, both with the GVPT2 and with the local mode approaches. Comparison of the two methods has permitted us to better describe the nature of active "anharmonic" modes in the two molecules and the role of mechanical and electrical anharmonicity in determining the intensities of VCD and IR/NIR data. Finally, two nonstandard IR/NIR regions have been investigated: the first one about ≈2000 cm-1, involving mostly two-quanta bending mode transitions, the second one between 7000 and 7500 cm-1 involving three-quanta transitions containing CH-stretching overtones and HCC/HCH bending modes.
Anharmonicity is a very important issue
to deal with for the accurate
determination of several spectroscopically observable quantities,
pertaining to rotational spectroscopy,[1,2] to Raman and
Raman optical activity (ROA), and to vibrational circular dichroism
and infrared spectroscopies. In the last field, the seminal paper
by Overend, Moscowitz, and associates[3] first
discussed the perturbative treatment at second order through the Van
Vleck canonical S-transformation theory,[1] to obtain dipole and rotational strengths corrected with mechanical
anharmonic contributions; afterward the treatment has been extended
to account also for electric anharmonicity on a single Morse oscillator[4] and on two coupled oscillators.[5,6] The problem is tackled in a more general way within the Generalized
vibrational perturbation theory at the second order (GVPT2)[7−10] implemented in the latest versions of Gaussian.[11] The latter approach permits to account for both
electrical and mechanical anharmonicities and also to treat resonances,
be it of Fermi[12] or Darling–Dennison[13] types. Alternatively, the local-mode model is
a more approximate but efficacious approach, suitable to describe
the near-infrared (NIR) region, where only the large-amplitude and
thus quite anharmonic XH-stretching modes are considered, both in
the fundamental and overtone regions.[14−16] The two methods were
employed and the results were compared in a recent work from some
of us dealing with the IR, VCD, NIR, and NIR-VCD spectra of chiral
2,3-butanediol and 1,2-trans-cyclohexanediol.[17] Those two molecular systems have at least two
accessible conformations, with the risk that the effect of anharmonicity
is obscured by the conformational mobility, further complicated by
the solvent dependence. For this reason, we have decided to treat
conformationally rigid molecules, namely methyloxirane (propylene
oxide) and methylthiirane (propylene sulfide), with the aim of better
focusing onto the anharmonic effects. It is worth to mention that
other cases for rigid molecules were partially treated with the anharmonic
local mode approach, like camphor, (S)-dimethylallene
and epichlorohydrin,[18−20] and by VPT2 approach including methyloxirane in mid-IR
region[21,22] and camphor and α-pinene also in the
first overtone region.[23]Many vibrational
chiroptical data have been presented through the
years on the two molecules, especially for VCD[24−28] but also for ROA,[29,30] and some of
those data will be considered here, together with our own data, either
in the same regions or in the NIR region, for which no chiroptical
data had ever been presented, to the best of our knowledge. We would
also like to remind that the two molecules are important per
se; indeed, methyloxirane has been discovered in the interstellar
media as the first chiral molecule,[31] by
rotational spectroscopy. Referring to astrochemistry, we hope that
the investigations presented here for the NIR region may provide a
first suggestion to identify the presence of chiral molecules in the
atmosphere of planets, much in the same way as Daniel et al.[32] did to study the higher atmosphere of earth
through local mode NIR absorption spectroscopy of OH/NH-containing
species. Other forms of chiroptical methods have been employed on
methyloxirane, like measuring and calculating the specific optical
rotation (OR),[33−35] also as determined by cavity ring-down polarimetry,
allowing one to gain insight into structural and charge distribution
aspects. Furthermore, in the ionization regime PECD (PhotoElectron
Circular Dichroism) spectroscopy has been fruitfully applied to characterize
enantiomers of methyloxirane free molecules.[36−39] With the present study, a better
characterization of the Atomic Polar Tensors (APT) and Atomic Axial
Tensors (AAT) will be provided.[40] The presentation
of the results will proceed as follows. In the Experimental
and Theoretical Computational Methods section, we will report
comparatively the experimental VCD and IR spectra of the two compounds,
pointing out similarities and differences in the two cases. In the
same section we will briefly review the various computational approaches
to deal with anharmonicity, which we had previously employed. In the Results and Discussion section the comparison of
experimental and calculated VCD and IR/NIR spectra will be carried
out, separating the IR and NIR regions, which notoriously are affected
differently by anharmonic phenomena. The last section will contain the conclusions reached here on the two systems, with
some attention to future perspectives, both in terms of methodology
and of data.
Experimental and Theoretical/Computational Methods
Synthesis
In order to be able to carry out VCD measurements
in the higher overtone NIR regions, we needed enantiomerically pure
(R)-2-methylthiirane in substantial amount; thus,
we reproduced its synthesis as previously reported in literature,[26,41] obtaining (R)-2-methylthiirane from the conversion
of (S)-2-methyloxirane. A full description of the
synthetic procedure and the assessment of the optical purity is provided
in section S1 of the Supporting Information. Optical rotatory dispersion (ORD) and electronic circular dichrosim
(ECD) were also recorded (see Figures S4 and S5 in Supporting Information) and are in
agreement with the data already reported in the literature.[42−44] The two enantiomeric samples of methyloxirane were bought from Sigma-Aldrich
and Alfa Aesar and used as received.
Chiroptical Spectroscopic Methods
Several VCD measurements
are present in the literature for methyloxirane and methylthiirane,
both in the mid-IR and in the CH-stretching region.[24−28] However, some data in the literature are for the
neat liquid state and some other for solutions in organic solvents
(e.g., CCl4, CS2, H2O). In order
to be fully consistent, we decided to run our own spectra, always
working with CCl4 solutions. For the mid-IR and CH-stretching
regions, VCD measurements were carried out first with a JascoFVS4000
instrument and were repeated through the use of a JascoFVS6000 instrument.
The two apparatuses are similar, i.e., they are FTIR instruments with
added linear polarizer and ZnSe photoelastic modulator to achieve
VCD measurements. The alignment and calibration procedure is different
in the two cases, namely, it is more automatized and arranged through
software in the second instrument. Final results were quite similar
and we report data from the latest experiments. In both cases, a liquid
N2-cooled HgCdTe (MCT) detector was employed for the mid-IR
experiments (resolution 4 cm–1) and a liquid N2-cooled InSb detector for the CH-stretching fundamental region
(resolution 8 cm–1). Solutions were contained in
BaF2 100 μm path length cells for the mid-IR and
in quartz infrasil 1 mm path length cuvette for the CH-stretching
region; unless otherwise specified, the concentration was 0.2 M/CCl4. 6000 scans were accumulated for each spectrum, and the reported
data are averages over the accumulated spectra and the solvent spectra
run in the same conditions were subtracted. Special care was paid
to the region 1700–2300 cm–1, containing
very weak nonfundamental transitions: 500 μm-BaF2 cells were employed, the rest of the conditions being the same.
In the NIR region, we used a home-built dispersive instrument with
a −20 °C cooled InGaAs detector, working in the range
of 6250–12 500 cm–1, corresponding
ca. to a 1600–800 nm interval and an extended InGaAs detector
cooled at −30 °C in the range 5600–6250 cm–1, corresponding ca. to 1800–1600 nm.[20,45] In the first CH-stretching overtone region (1800–1600 nm)
2 mm quartz cuvettes were employed, while for the second overtone
(1300–1000 nm) region 2 cm quartz cuvettes were used. The concentration
was 1.9 M and the number of accumulated scans was 5 with absorption
baseline (ABL) spectra subtracted from CD spectra (see refs (45 and 20)) and solvent spectra run in the
same condition were subtracted out in the final stage. For the first
overtone region, presenting low signal-to-noise ratio, 48 scans were
accumulated. The resolution was 4.5 nm in all the NIR range, corresponding
to ≈15 cm–1 at 1700 nm and ≈30 cm–1 at 1200 nm.[45] The most
important and intense features of the IR and VCD spectra are reported
for both enantiomers of methyloxirane and for the (R)-enantiomer of methylthiirane in Figure , from the mid-infrared (top) to the CH-stretching
fundamental (second panel from top), to the first CH-stretching overtone
(third panel from top) to the second CH-stretching overtone (bottom).
Other regions were investigated and will be described in the following.
Before interpreting VCD and IR spectra through DFT calculations, it
may be worthwhile to just compare data for methyloxirane and methylthiirane,
evidencing the major different features in the two cases. Mid-IR spectra:
IR and VCD exhibit features with similar intensities, with the following
differences. IR bands at ca. 1360 and 1050 cm–1 (showing
positive and negative VCD respectively for (R)-methylthiirane)
are typical of methylthiirane, while the 1400 cm–1 strong IR band (with positive VCD for (R)-methyloxirane)
is typical of (R)-methyloxirane. Although only one
atom differentiates the two molecules, their IR and VCD spectra are
quite different. The largest observed g-ratio gets
close to 1 × 10–3 for certain bands, which
is rather large. The dissymmetry ratio g is defined
as g = Δϵ/ϵ, and its value is expected
to be of the order 10–5 in vibrational transitions.[46] Fundamental CH-stretching spectra: here, observed g-ratios are more standard, limited above to 10–4. The major difference in the spectra of the two molecules is the
fact that, overall, both IR and VCD in methylthiirane are weaker (by
ca. one-half) than those for methyloxirane. The spectral band-shapes
present also differences. The relative intensity of the highest frequency
band is significantly larger in methyloxirane with respect to the
most intense peak at ≈3000 cm–1. Furthermore,
the IR spectrum of methylthiirane appears spread on a wider range
of frequencies, suggesting participation from several close transitions.
The picture is somehow reverted in the VCD spectra, where methyloxirane
spectra are more structured. Nonetheless, some analogy between the
systems may still be found. In particular, referring to the (R)-configuration and moving from high to low wavenumbers,
a first weak negative band is followed by an intense positive signal
in both systems.
Figure 1
Experimental IR and VCD spectra of (R)-2-methylthiirane
and 2-methyloxirane (enantiomers R and S). From the top, mid-IR (850–1500 cm–1),
fundamental CH stretchings (2750–3050 cm–1), first overtone CH stretchings (5550–6250 cm–1), and second overtone CH stretchings (8100–9100 cm–1) spectroscopic regions are reported. The spectra have been recorded
in 0.2 M/CCl4 solutions.
Experimental IR and VCD spectra of (R)-2-methylthiirane
and 2-methyloxirane (enantiomers R and S). From the top, mid-IR (850–1500 cm–1),
fundamental CH stretchings (2750–3050 cm–1), first overtone CH stretchings (5550–6250 cm–1), and second overtone CH stretchings (8100–9100 cm–1) spectroscopic regions are reported. The spectra have been recorded
in 0.2 M/CCl4 solutions.First overtone CH-stretching spectra: the VCD spectrum
is monosignate
with three main positive features for (R)-methyloxirane,
with g-values of the order of 0.2 × 10–4. Second overtone CH-stretching spectra: while the NIR spectra are
similar in shape and overall intensity, with a central asymmetric
doublet—though with additional features for (R)-methylthiirane at low energy—VCD features are quite different,
with VCD for (R)-methylthiirane larger than for (R)-methyloxirane, the former consisting essentially in a
negative–positive couplet (from low to high wavenumbers). In
the case of (R)-methyloxirane, there appear two weak
monosignate positive features corresponding to the main absorption
features. The g-ratios are still 0.2 × 10–4 for (R)-methyloxirane, while they
are larger for (R)-methylthiirane, reaching 0.8 ×
10–4. All the data for the g-ratios
are reported in section S2 of the Supporting Information.
Theoretical Background and Computational Methods
The GVPT2 Approach: Basis and Advancements
Unless specified
otherwise, calculations were performed with the Gaussian16 suite of
quantum chemical programs.[11] Based on the
extensive benchmark analysis from ref (47), the combination of B3PW91[48] functional with empirical dispersion (D3BJ) and the SNSD[8,47] basis set was used, hereafter labeled PW91. Geometry optimizations
were performed with tight convergence criteria (i.e., 1 × 10–5 hartree/bohr and 4 × 10–5 bohr
on RMS forces and displacements, respectively, with thresholds for
the maximum values being 1.5 times larger), and minima were confirmed
by Hessian evaluations. Harmonic energies and intensities were obtained
using analytic second derivatives of the energy and first derivatives
of the properties of interest, whereas higher-order derivatives were
computed through numerical differentiation using a step of 0.01 Å for the displacements along the
mass-weighted normal coordinates. Harmonic frequencies, as well as
energies and gradients, were also computed including solvent effects
represented by the polarizable continuum model (PCM).[49,50] Due to the finite differences procedure, the inclusion of solvent
effects may lead to numerical instabilities in cubic and quartic force
fields. Indeed, this effect was found to be particularly pronounced
for XH stretchings since their motions are too fast to allow solvent
equilibration.[23,50] Since the harmonic spectra in
gas-phase and in CCl4 shows negligible differences (see Figure S12 in Supporting Information), in order
to retain consistency across simulations, we opted to employ gas-phase
calculations in all the regions investigated. It should be noted that
the problem of numerical stability, which may occur not only with
the PCM cavity but also in the case of shallow PESs where the true
minima may be difficult to reach, is relatively easy to assess. Indeed,
the generation of all necessary anharmonic force constants and properties
derivatives is partially redundant with nondiagonal quantities. For
instance, a cubic force constant with respect to three different modes, i, j, and k is computed
thrice, by displacement along the normal coordinates associated with
each mode. It is thus possible to control the stability of the calculations
by checking that the same value is constantly obtained for each alternative
definition. In practice, because of the limits of numerical precision,
some fluctuations may occur. A small value below 1 cm–1 for force constant has proven to be a good criteria of consistency
and thus stability.More accurate geometries were obtained by
optimizing the molecular systems with the double hybrid revDSD-PBEP86
functional[51] including empirical dispersion
(D3BJ) in conjunction with the jun-cc-pVTZ[52,53] basis set (rDSD in the following). Anharmonic calculations, up to
three quanta transitions,[10] were performed
with the GVPT2 model as implemented in a development version of the
Gaussian suite of programs.[54] An issue
that commonly plagues VTP2 calculations is the presence of resonances:
in GVPT2, the diverging terms are removed from the perturbative expressions
(IDVPT2[47]), and corrected in a second step
through a reduced-dimensionality variational calculation (GVPT2).
As described in ref (47), resonances are identified through two-step procedures, which account
for the differences between energy and intensity. The employed parameters
are reported in section S4 of Supporting Information. Calculation analysis and the plotting of the simulated spectra
were supported by the ESTAMPES[55] Python
library for data processing and MATPLOTLIB graphical library.[56]In Figure , we
provide the optimized geometries of (R)-2-methyloxirane
and of (R)-2-methylthiirane. By simple inspection
one may appreciate that the methyloxirane ring is almost an equilateral
triangle, while the methylthiirane ring is a rather acute isosceles
triangle. This may be further appreciated by looking at the data in Table . One may see that
the CX (X = O, S) bond lengths are quite different for O and S, the
latter being considerably longer (by ca. 0.4 Å), therefore showing
a wider CX̂C in methyloxirane with respect to methylthiirane.
However, and this will be interesting for the subsequent analysis,
it is even more intriguing to notice that the lengths of the CH bonds
directly connected to the epoxy (episulfide) ring, namely those for
the CH2 and C*H groups, are shorter for the sulfide than
for the oxide. Calculated CH bond lengths for the methyl group are
more similar in the two cases and are more similar to the standard
CH-bond lengths, e.g. in alkanes; in fact, they are slightly larger
than 1.09 Å, while those for CH2 and C*H are closer
to 1.08 Å. In correspondence of the shorter and tighter CH bonds,
one may notice larger values for the harmonic vibration local-mode
frequency ω0 (vide infra).
Figure 2
Chemical 3D structure and atom numbering of (R)-2-methylthiirane on the right and (R)-2-methyloxirane
on the left.
Table 1
Comparison of the Calculated Bond
Lengths (Å) and Interbond Angle CXC (X = O, S) (deg) for Methyloxirane
and Methylthiirane at the rDSD Level of Theory; Harmonic Wavenumbers
(ω0) and Anharmonicity Constant (χ) as Defined
in eq and Obtained
at PW91 Level Are also Given in Wavenumber Units (cm–1)a
MeOx
MeThi
MeOx ω0
MeThi ω0
MeOx χ
MeThi χ
C5–C2
1.4635
1.4808
C7–C5
1.5009
1.5063
C5–X
1.4383
1.8318
C2–X
1.4386
1.8272
C5–H6
1.0872
1.0850
3115.01
3156.26
62.28
61.66
C2–H4
1.0848
1.0829
3145.23
3182.67
61.17
60.81
C2–H3
1.0855
1.0839
3139.60
3173.53
61.26
60.68
C7–H8
1.0928
1.0944
3089.49
3066.17
59.39
60.78
C7–H9
1.0911
1.0913
3107.14
3106.46
59.34
59.13
C7–H10
1.0920
1.0911
3091.87
3106.40
59.91
59.75
C5–X–C2
61.155
47.747
The atom numbering is reported
in Figure .
The atom numbering is reported
in Figure .Chemical 3D structure and atom numbering of (R)-2-methylthiirane on the right and (R)-2-methyloxirane
on the left.In the following, vibrational transition current
density (VTCD)
vector fields were computed as reported in ref (57), the required electronic
transition current density was computed for each state over a grid
of points with a locally modified version of the Cubegen utility of
Gaussian16 and saved as a discretized volumetric data set in plain-text
cube files. 200 exited states were included in the sum-overstates
procedure. 3D VTCD figures representing the vector field as streamtubes
were obtained with the Mayavi package[58] as reported in ref (57). Throughout the paper, the simulated spectra have been offset with
respect to the experimental ones to improve the clarity of the presentation.
The Local Mode Model: Basis and Advancements
Here we
briefly report the main equations we have employed to interpret IR
and VCD spectra in the fundamental and overtone regions through the
local-mode approximation. We use the notation previously employed
by Paoloni et al.,[17] but we remark that
we go beyond the first order derivative in the Atomic Polar Tensor
and Atomic Axial Tensor, in order to be able to account for the second
overtone CH-stretching region, as previously done in refs (18 and 20), working on the basis of the
results from Sage[59] and Gallas.[60] The transition energies from the ground to the
excited states of one of the 6 CH stretching vibrations (l = 1, 6, related to the three groups CH3, CH2, and C*H) have the form:with n the number of quanta associated with the CH bond l, and the parameters ω0 and χ (in wavenumber
units) determined by the Morse potential parameters D and α,[61,62] namely (omitting from now on
the bond label l):mR being the reduced
mass of the CH bond, ca. (12/13) u, and the other
constants besides D and α obvious fundamental
constants. Following the procedure presented in refs (17 and 18), and reported in section S5 of Supporting Information, we obtained the values
for ω0 and χ reported in Table and commented above. Along the internal
coordinate z corresponding to the stretching direction,
the values of the jz-components (j = 1, 3) of the atomic polar tensor Π and their z-Taylor expansion and of the atomic axial tensor A and their z-Taylor expansion determining
the electric and magnetic dipole transition moments, respectively,
are required to compute the intensity of the properties and useful
to define their role for the local mode calculations:where p is the conjugated
moment to the z-coordinate along the CH-bond. The tα are dimensionless displacements, being tH ≈ (12/13) and tC ≈ (−1/13).In eqs and 4, the Πα,(0) and Aα,(0) are electrically harmonic terms, while the next
two terms define electrical anharmonicities. In Table , we report the values
for the transition moments appearing in eqs and 4 formally evaluated
at the harmonic level (harmonic oscillator eigenfunctions) and also
including the contributions from the mechanical anharmonicity, that is, related to the eigenfunctions of the Morse oscillator.
The latter contributions are given in terms of the (χ/ω0) parameter, which we were able to use for almost all transition
moments. In all cases the moments were expressed in terms of the handy
parameter d, which is a characteristic length, whose
value is approximately 0.2 Å for CH stretching and is defined
(in electrostatic cgs units) bywhere ω0 is the harmonic
frequency in wavenumber units from eq . In Table , it is reassuring to notice that in all considered cases
the values for the moments in the anharmonic case tend to those calculated
for the harmonic case for (χ/ω0) → 0.
Table 2
Transition Integrals for Fundamental,
First, and Second Overtones in the Local-Mode Representationa
quantity
harmonic
case
anharmonic
case
⟨0|z|1⟩
⟨0|z2|1⟩
0
⟨0|z3|1⟩
⟨0|p|1⟩
⟨0|zp|1⟩
0
⟨0|z2p|1⟩
⟨0|z|2⟩
0
⟨0|z2|2⟩
⟨0|z3|2⟩
0
⟨0|p|2⟩
0
⟨0|zp|2⟩
⟨0|z2p|2⟩
0
⟨0|z|3⟩
0
⟨0|z2|3⟩
0
⟨0|z3|3⟩
⟨0|p|3⟩
0
⟨0|zp|3⟩
0
⟨0|z2p|3⟩
With respect to ref (17), the sign of χ is
opposite and some expressions have been corrected.
With respect to ref (17), the sign of χ is
opposite and some expressions have been corrected.
Results and Discussion
Comparison of Calculated and Experimental Chiroptical Spectra
IR and VCD Spectra (900–1600 cm–1 Region)
In Figure , we
report the results of the calculated mid-IR absorption and VCD spectra
in the anharmonic case, and compare them to the corresponding experimental
data. Results are in excellent agreement with the experimental spectra,
in terms of sign (for VCD) and intensity (for both IR and VCD). Yet
we notice that already the harmonic calculations for the same choice
of functional/basis set performed excellently (Figure S10, in section S3). 0.98 scaling factor was applied
to the latter computed spectra, while in the anharmonic case the results
are plotted without any empirical correction. In passing, we also
notice that the harmonic calculations by Polavarapu et al.[26] and by Amos et al.,[63] based on wave function theory, were very good as well. From this,
we infer that anharmonicity, either mechanical or electrical, has
little influence on the most prominent features of this region. However,
the application of multiple scaling factors is required to have a
good or at least acceptable correspondence between experimental and
harmonically calculated spectra: in the present case the scaling factor
was 0.98 for mid-IR and 0.96 for the fundamental CH-stretching region,
respectively. Of course, the number of needed scaling factors may
increase significantly with the size and number of conformers of the
molecular systems. Anharmonic calculations, like the one presented
here, allow one to avoid any arbitrariness related with employing
empirical and variable scaling factors.[64]
Figure 3
Comparison
of the experimental IR and VCD spectra (black lines)
of (R)-2-methylthiirane (bottom left and bottom right
panels) and (R)-2-methyloxirane (top left and top
right panels) with anharmonic calculations in the mid region (colored
lines). Calculations were performed at the PW91 level. The spectra
were simulated assigning Lorentzian distribution functions with 7
cm–1 of half-width at half-maximum. The reference
VCD spectrum reported as experiment for the (R)-enantiomer
of methyloxirane here is the semi-difference of the (R) and (S) VCD spectra of Figure .
Comparison
of the experimental IR and VCD spectra (black lines)
of (R)-2-methylthiirane (bottom left and bottom right
panels) and (R)-2-methyloxirane (top left and top
right panels) with anharmonic calculations in the mid region (colored
lines). Calculations were performed at the PW91 level. The spectra
were simulated assigning Lorentzian distribution functions with 7
cm–1 of half-width at half-maximum. The reference
VCD spectrum reported as experiment for the (R)-enantiomer
of methyloxirane here is the semi-difference of the (R) and (S) VCD spectra of Figure .An interesting feature of the VCD data of both
molecules is that
the g-ratio for most bands of this region is rather
large, reaching the value 0.8 × 10–3 for the
bands at ca. 1000 and 1360 cm–1 for (R)-2-methylthiirane (respectively marked as 4 and 1 in Figure ) and at ca. 900 cm–1 for (R)-2-methyloxirane (marked as 4 in Figure ). This remarkable
behavior of the g-ratio had already been noticed
by Polavarapu et al.[24,27] Such value is indeed more typical
of the electronic case than of the vibrational case. This is even
more extraordinary considering the simplicity of the systems.With the hope of learning something about the source of such strong
VCD activity, we looked comparatively at the normal modes associated
with four bands with high g and, in one case, with high VCD. Referring
to Figure we have
band 1 at ≈1400 cm–1 for (R)-2-methyloxirane and at ≈1360 cm–1 for
(R)-2-methylthiirane is HCH-bending (CH2) + C*H-bending + CH3-anstisymmetric bending + CC-stretching.
Band 2 at ≈1020 cm–1 for (R)-2-methyloxirane is CH2–twisting + C*H-bending
+ CO-stretching. Band 2 at ≈1080 cm–1 for
(R)-2-methylthiirane is CH2–rocking
+ C*H-bending + CS-stretching (strongest VCD for (R)-2-methylthiirane). Band 3 at ≈950 cm–1 for (R)-2-methyloxirane and at ≈1000 cm–1 for (R)-2-methylthiirane is CO-stretching
+ C*H-bending + CH3-umbrella (strongest VCD for (R)-2-methyloxirane) and CH2–wagging, respectively.
Band 4 at ≈900 cm–1 for (R)-2-methyloxirane is CH2–rocking + C*H-bending
+ CO-stretching. Band 4 at ≈1000 cm–1 for
(R)-2-methylthiirane is CH2–twisting
+ C*H-bending + CS-stretching. Bands 4 are the ones with the largest
experimental g-ratio, about 0.8 × 10–3. Since the most intense bands seem to involve to some degree the
CO/CS bond stretching (even though the normal modes which can be named
as CO/CS stretching are found at lower frequencies,[24,27] as may be checked from the harmonic normal modes), we thought that
the involvement of the O/S atom in generating high g-ratio is due to the electrical rather than the mechanical anharmonicity.For this reason, we decided to plot in Figure the current densities for the band 4 in
the two cases, namely for band at 900 cm–1 for (R)-2-methyloxirane (6th normal mode) and 1000 cm–1 in (R)-2-methylthiirane (9th normal mode). We followed
the method reported in ref (57), first presented by Nafie at al.[65,66] To facilitate the comparison, we also plotted, in Figure , the current density for mode
24, which is found at the highest wavenumber. One may appreciate that
the two mid-IR/high g-ratio transition exhibit the
involvement of O and S atoms, even though curved patterns in the current
density may be observed on all the heavy atoms of the rings. Circulation
of charge is responsible for the electronic contribution to the magnetic
dipole transition moment. In contrast, the antisymmetric stretching
mode 24 presents high linear displacement current, associated with
the electronic contribution to the electric dipole transition moment,
from one hydrogen to the other in the CH2 unit, with smaller
components on O/S and other heavy atoms; concomitantly its g-ratio is about 10–4.
Figure 4
Top panels: 3D representations
of the VTCD vector field for the
high g-ratio normal modes of methyloxirane (6th normal
mode, ≈900 cm–1, left) and methylthiirane
(9th normal mode, ≈1010 cm–1, right). Bottom
panels: 3D representations of the VTCD vector field for the CH2–antisymmetric stretching (24th normal mode) of methyloxirane
(left) and methylthiirane (right). The red arrows depict the charge-weighed
nuclear displacement vectors for the normal modes.
Top panels: 3D representations
of the VTCD vector field for the
high g-ratio normal modes of methyloxirane (6th normal
mode, ≈900 cm–1, left) and methylthiirane
(9th normal mode, ≈1010 cm–1, right). Bottom
panels: 3D representations of the VTCD vector field for the CH2–antisymmetric stretching (24th normal mode) of methyloxirane
(left) and methylthiirane (right). The red arrows depict the charge-weighed
nuclear displacement vectors for the normal modes.
IR and VCD Spectra (1700–2300 cm–1 Region):
A Region for Overtones and Combinations Only
In addition
to the limitations discussed above, the harmonic approximation does
not allow one to account for the contributions of the combinations
and overtones to the spectral band-shape, contrary to anharmonic approaches
like VPT2. In Figure , we compare the calculated and experimental IR absorption spectra
in the 1600–2300 cm–1 range where only combinations
and overtones are present. Stated otherwise, the region is void of
fundamentals. At the GVPT2 level, we obtain an excellent agreement
with the experiment. We wish to point out that the comparison of experimental
and calculated data in this region had never been presented, to the
best of our knowledge.
Figure 5
Comparison of the experimental IR and VCD spectra (black
lines)
of (R)-2-methylthiirane (bottom left and bottom right
panels) and both enantiomers of 2-methyloxirane (top left and top
right panels, R-enantiomer black line and S red line) with anharmonic calculations of R-enantiomers in the 2300–1600 region (colored lines). Calculations
were performed at the PW91 level. The spectra were simulated assigning
Lorentzian distribution functions with 7 cm–1 of
half-width at half-maximum. The assignment of some transitions is
also reported. “n” represents the final vibrational state with n quanta associated with mode m.
Comparison of the experimental IR and VCD spectra (black
lines)
of (R)-2-methylthiirane (bottom left and bottom right
panels) and both enantiomers of 2-methyloxirane (top left and top
right panels, R-enantiomer black line and S red line) with anharmonic calculations of R-enantiomers in the 2300–1600 region (colored lines). Calculations
were performed at the PW91 level. The spectra were simulated assigning
Lorentzian distribution functions with 7 cm–1 of
half-width at half-maximum. The assignment of some transitions is
also reported. “n” represents the final vibrational state with n quanta associated with mode m.In this region, the most prominent transition is
associated with
the overtone band of the CH2 wagging—labeled as
210 in Figure —which in methyloxirane is observed and calculated
at an energy 180 cm–1 higher than in methylthiirane
(i.e., 2070 and 2250 cm–1 respectively). Moreover,
marked differences are present between the two systems. In methylthiirane
the region is almost centered around the CH2 wagging overtones
and the spectra are characterized by transitions involving the combination
of the CH2 wagging mode with other CH bending modes close
in energy. In contrast, in methyloxirane the role played by combinations
involving the CH2 wagging is less pronounced and several
combinations of CO stretching modes and ring deformation modes emerge.
In Figure , some of
the major transitions in both VCD and IR spectra are also reported
and a description of the harmonic normal modes of the systems can
be found in Table S1 in Supporting Information.
NIR and NIR-VCD Spectra
CH Stretching Fundamentals and Overtones (2800–9000 cm–1 Regions)
We next move to comment the results
for the CH-stretching regions, comprised of the fundamental (Δν
= 1) transitions, as well as of the first overtone (Δν
= 2) and second overtone (Δν = 3) transitions. Unlike
the mid-IR region, the g-ratios are of the order
of 10–4, which is standard for the vibrational case.
The same order of magnitude for the g-ratio is observed
in the three regions, in accord with the conclusions drawn some time
ago, based on perturbation theory, by Faulkner[3] and by Abbate et al.[67] The performance
of the GVPT2 calculations is excellent, as may be seen from Figure
Figure 6
Comparison of experimental
IR (first and second columns) and VCD
(third and fourth columns) spectra (black lines) of (R)-2-methylthiirane and (R)-2-methyloxirane with
anharmonic calculations of IR and VCD spectra in the CH regions (colored
lines). Calculations were performed at the PW91 level. The spectra
were simulated assigning Lorentzian distribution functions with 10,
15, and 40 cm–1 of half-width at half-maximum in
the fundamental, first and second overtone regions, respectively.
The reference VCD spectra reported as experiment for the (R)-enantiomer of methyloxirane here are the semi-difference
of the (R) and (S) VCD spectra of Figure .
Comparison of experimental
IR (first and second columns) and VCD
(third and fourth columns) spectra (black lines) of (R)-2-methylthiirane and (R)-2-methyloxirane with
anharmonic calculations of IR and VCD spectra in the CH regions (colored
lines). Calculations were performed at the PW91 level. The spectra
were simulated assigning Lorentzian distribution functions with 10,
15, and 40 cm–1 of half-width at half-maximum in
the fundamental, first and second overtone regions, respectively.
The reference VCD spectra reported as experiment for the (R)-enantiomer of methyloxirane here are the semi-difference
of the (R) and (S) VCD spectra of Figure .While the harmonic approximation performs well
in the Δν
= 1 region (see Figure S11), apart from
an overestimation of the energy, which can be corrected with a scaling
factor of 0.96, it is unable to reproduce the band-shape in the other
two regions. By including the anharmonic effects, the sequences of
signs in the VCD spectra are correctly reproduced, including the intensities,
which are found in good agreement, even though slightly overestimated
in the fundamental region with respect to the experiment, both in
IR and VCD. A second minor issue is that the band positions for (R)-2-methylthiirane in the Δν = 1 and Δν
= 3 (and presumably Δν = 2) are overestimated with respect
to experiment. As for the assignment of the individual bands, in both
molecules we have three main absorption features, a symmetrical narrow
band at ca. 3050 cm–1, a broader central structure
composed of multiple bands at 3000 cm–1 and a final
feature at 2930 cm–1 followed by minor transitions.
The first band, assigned to the CH2–antisymmetric
stretching, νasym(CH2), in both cases
corresponds to a negative VCD signal. In the central portion, starting
from higher energies, one encounters ν(C*H) and then another
main broad band with two or more coalescing features, which are mainly
associated with νasym(CH3) and νsym(CH3) modes with some contributions from ν(C*H).
The corresponding VCD of this portion is composed of alternating sign
features in (R)-2-methyloxirane with a slight prevalence
of the positive sign and with a definite positive sign band in the
VCD of (R)-2-methylthiirane. Finally, at the lowest
frequency 2930 cm–1, one has a symmetric absorption
band, followed by lower-intensity bands, which is associated with
νsym(CH2). The sign of the main VCD band
in that region is positive for (R)-2-methyloxirane
and negative for in (R)-2-methylthiirane.Moving
now to the first (Δν = 2) and second overtone
(Δν = 3) CH-stretching regiona, we may see that, roughly
speaking, the Δν = 2 absorption spectra of both (R)-2-methyloxirane and (R)-2-methylthiirane
present one more band than the Δν = 3 absorption spectrum,
namely, the higher frequency symmetrical feature at ca. 6100 cm–1. The rest of the spectra, though not identical, share
similar patterns between the two regions. The overtones VCD spectra
of (R)-2-methyloxirane and (R)-2-methylthiirane
look different. The one of (R)-2-methyloxirane has
positive bands for both Δν = 2 and Δν = 3,
while in (R)-2-methylthiirane the calculated and
observed VCD spectra have alternating signs at Δν = 3.
The observed large noise in the methylthiirane Δν = 2
VCD spectrum allows only to unambiguously assign the most intense
transition. In any case the higher frequency VCD positive feature
observed and calculated for (R)-2-methyloxirane and
calculated for (R)-2-methylthiirane corresponds to
the isolated 6100 cm–1 absorption band. GVPT2 calculations
perform excellently, reproducing most of the features observed in
the spectra. Looking at the GVPT2 results for the band assignment
of the calculated features in the 2- and 3-quanta transitions, we
learn that the highest energy transitions (≈6100 cm–1) is the pure 2νasym of the CH2 stretching,
whereas at lower frequencies, the weight of combination modes on the
final spectrum is increasing. Also in the Δν = 3 region,
the agreement with experiment, both in terms of energy and intensity,
is remarkable. Though the simulation of NIR spectra in the three-quanta
region within GVPT2 framework is gaining popularity in literature,[68−70] it should be noted here that these are among the first GVPT2 VCD
spectra reported. At Δν = 3, combinations and overtones
of normal modes combine together to give the local-mode picture[16] as first proposed by Lehmann[71] and embraced by others[5] (vide infra). The increasing contribution of combination
bands moving from Δν = 2 to Δν = 3 may also
be appreciated looking at Figure S13 in
Supporting Information where line spectra are reported with different
colors depending on the transitions.In conclusion, we may say
that the present calculations perform
very well. Additionally, they help one to follow the normal mode-local
mode transition (the normal mode regime may be still valid for Δν
= 2, while the local mode one comes in at Δν = 3).
Before moving to the local-mode interpretation
though, let us examine the intermediate spectroscopic region between
Δν = 2 and Δν = 3, which, aided by simulations,
is characterized by several combination transitions with the form
of 2i + k, with i being of CH-stretching nature and k of bending
nature. In Figure , we compare experimental and calculated NIR and NIR-VCD spectra
in that region for both (R)-2-methyloxirane (first
and third columns) and (R)-2-methylthiirane (second
and fourth columns). Calculations, even based on empirical models,
have been seldom presented for these bending-stretching combination
region,[72] but never, to the best of our
knowledge, based on DFT or ab initio methods. In
the present case, we have just verified that the highest frequency
feature, at about 7469 cm–1 for (R)-2-methyloxirane and 7500 cm–1 for (R)-2-methylthiirane, are due to a combination involving two quanta
from normal mode νasym(CH2) and one quantum
from the (HCH)-bending. The other features comprise other 3-quanta
combinations, where C*H, CH2, and CH3-stretching
modes combine variously. At 7325 cm–1 for (R)-2-methyloxirane and 7345 cm–1 for (R)-2-methylthiirane, we noticed combination transitions
of the form i + j + k, with the three different normal modes being νasym(CH2), νsym(CH2), and a bending.
Figure 7
Comparison
of the IR and VCD experimental and calculated anharmonic
spectra of (R)-2-methyloxirane, (R)-2-methylthiirane (black line) and (S)-2-methylthiirane
(red line) in the 6000–8000 cm–1 region.
Calculations were performed at the PW91 level. The spectra were simulated
assigning Lorentzian distribution functions with 30 cm–1 of half-width at half-maximum.
Comparison
of the IR and VCD experimental and calculated anharmonic
spectra of (R)-2-methyloxirane, (R)-2-methylthiirane (black line) and (S)-2-methylthiirane
(red line) in the 6000–8000 cm–1 region.
Calculations were performed at the PW91 level. The spectra were simulated
assigning Lorentzian distribution functions with 30 cm–1 of half-width at half-maximum.
CH Stretching Fundamentals and Overtones (2800–8500 cm–1 Regions): The Local-Mode Interpretation
In Figure , we present
the comparison of the experimental IR and VCD spectra for the fundamental
(Δν = 1), the first (Δν = 2) and second overtone
(Δν = 3) CH-stretching regions with the corresponding
calculated ones. The energy of each transition associated with CH-stretching
were obtained in the local-mode framework through the Birge–Sponer
relation of eq from
the values of ω0 and χ reported in Table . The associated IR
and VCD intensities were computed using eqs and 4, where the required
values of atomic polar tensors Π and atomic axial tensors A and their derivatives with respect to CH-bond elongations
were obtained by polynomial fit of the values reported in Figures S14 and S15 for (R)-2-methyloxirane
and (R)-2-methylthiirane, respectively. In Figure S16 of the Supporting Information, we
present the calculated line spectra superimposed to the convoluted
spectra, where the contributions of each CH stretching is highlighted
with a color code.
Figure 8
Comparison of the experimental IR (first and second columns)
and
VCD (third and fourth columns) spectra of (R)-2-methylthiirane
(orange) and (R)-2-methyloxirane (blue) with the
local-mode calculations in the CH-stretching regions. The spectra
were simulated assigning Lorentzian distribution functions with 10,
15, and 40 cm–1 of half-width at half-maximum in
the fundamental, first, and second overtone, respectively. The reference
VCD spectra reported as experiment for the (R)-enantiomer
of methyloxirane here are the semidifference of the (R) and (S) VCD spectra of Figure .
Comparison of the experimental IR (first and second columns)
and
VCD (third and fourth columns) spectra of (R)-2-methylthiirane
(orange) and (R)-2-methyloxirane (blue) with the
local-mode calculations in the CH-stretching regions. The spectra
were simulated assigning Lorentzian distribution functions with 10,
15, and 40 cm–1 of half-width at half-maximum in
the fundamental, first, and second overtone, respectively. The reference
VCD spectra reported as experiment for the (R)-enantiomer
of methyloxirane here are the semidifference of the (R) and (S) VCD spectra of Figure .The results are in fairly good agreement even with
the local-mode
approximation. Indeed, already in other molecules with multiple CH
bonds, like camphor and camphorquinone[18,20] or in OH cases,[17] this had been proved, but this is the first
instance for a systematic comparison with GVPT2 up to Δν
= 3. The purely local-mode model can predict only overtone bands,
disregarding combinations. For this reason, the number of transition
calculated in each Δν region is always the same. As a
result, two absorption bands are predicted for (R)-2-methyloxirane, the higher-frequency one collecting the CH2-local modes and the C*H isolated mode, the lower frequency
one containing the CH3-local modes. For (R)-2-methylthiirane, four absorption bands are predicted, with the
highest band still containing the CH2-local modes, while
the three lower frequency ones correspond to the C*H and the CH3-local modes, the latter being “less degenerate”
than for (R)-2-methyloxirane. Similar results are
obtained for the VCD calculated spectra in the Δν = 1,
Δν = 2, and Δν = 3 regions. Of course, the
comparison with experimental data improves when increasing Δν,
being optimal for Δν = 3. It is worth noting that all
the anharmonic contributions, both mechanical and electrical, need
to be accounted for to achieve a satisfactory agreement with the experimental
spectra, as demonstrated in Figure S17,
where we present the results obtained suppressing the contribution
of electrical anharmonicity.Comparing the two approaches (Figures and 8), three aspects
should be considered. First, intensities in the Δν = 1
region are overestimated in the local-mode model. This happened also
in the GVPT2 approach, but to a lesser extent. Second, frequencies
for (R)-2-methylthiirane are overestimated, and this
imperfection is shared by the GVPT2 interpretation, most probably
due to limitations in the chosen electronic structure calculation
method. Finally, both in (R)-2-methyloxirane and
(R)-2-methylthiirane, the observed highest frequency
feature for Δν = 1 and Δν = 2 regions is not
predicted by the local-mode approach, since it is due to the antisymmetric
CH2 stretching fundamental (Δν = 1) and its
overtone (Δν = 2), as noted above when commenting the
GVPT2 results, which are satisfactory in this respect. Within the
local-mode scheme, one should describe this feature at Δν
= 2 as a combination with one quantum on each CH oscillator.As a final comment, our work proves that the local mode regime
takes place at Δν = 3, which is well represented either
starting from the local mode basis or from normal mode basis as done
in the previous section.
Conclusions
In this work, we have interpreted the IR
and VCD spectra of (R)-2-methyloxirane and (R)-2-methylthiirane
from 900 to 9000 cm–1 with full account of anharmonic
effects by means of the GVPT2 approach, through the use of Gaussian.
We verified that in these cases the anharmonic perturbation over the
mid-IR region (from 900 to 1600 cm–1) is of minor
importance. In this region, the harmonic approximation already works
pretty well, apart from a wavenumber scaling, with due account of
the high values for the g dissymmetry ratio observed
there (of the order of 10–3). To this instance,
the visualization of the current densities allows one to appreciate
that in that region a major role is played by either the oxygen or
sulfur atom, even in absence of motions from these atoms. Conversely,
due account of anharmonicity allows one to predict excellently the
CH-stretching regions, from the fundamental (Δν = 1) to
the next two overtone regions (Δν = 2 and Δν
= 3). For the latter two regions and, to a limited extent, for the
Δν = 1 region, the local-mode approximation gives also
a fair account of the experimental data, despite disregarding any
coupling between oscillators. Herein, we give the necessary transition
integrals to calculate dipole and rotational strengths as simple functions
of the parameter χ/ω0. This parameter has also
been shown to be important to describe the transition from normal
modes to local modes regime.[71,73] The combined use of
the GVPT2 and local mode methods permits one to appreciate how the
normal modes couple among them, with modes more localized at higher
energy, and vice versa. In other words and more specifically, we think
that the comparison of the results from the two methods will allow
in the future to build well-grounded harmonically coupled anharmonic-oscillator
(HCAO) models,[14−16] using as perturbation parameters (χ/ω0) or alternatively
(λ/ω0) (λ being the frequency separation
of normal modes, related
to the oscillator coupling constants), as preliminarily done in refs (5 and 6). Finally other regions involving
either combinations of pure deformation/bending modes (between 1700–2300
cm–1) or of combinations of CH-stretching overtone
modes and bending modes (between 7000 and 7500 cm–1) have been quite satisfactorily interpreted, making us confident
that the GVPT2 approach may now be proposed to practitioners as a
ready-to-use tool, even at the analytical level. The results achieved
on these two rigid molecules may pave the ground for the application
of the method on more complex and flexible systems but also where
the solvent may play a crucial role both in terms of direct interactions
and of relative stability of the conformers.