Literature DB >> 36125282

Draft Genome Sequence of Bacillus velezensis Strain Krd-20 with Antifungal Activity, a Biotechnologically Important Isolate from Wheat Root Zone.

Sergey V Kopyltsov1, Alexander V Milovanov2, Anastasia V Elisiutikova2, Darja S Savenkova2, Kristina O Petrova3, Dmitry V Kwon3, Andrej G Koshchaev1.   

Abstract

Bacillus velezensis Krd-20 strain with antifungal activity was isolated from the wheat rhizosphere. This strain is used to suppress fungi of the Fusarium sp. when growing oyster mushroom (Pleurotus ostreatus). Genome assembling resulted in 44 contigs with a total length of 3939663 bp were obtained, the GC content is 46.4%.

Entities:  

Year:  2022        PMID： 36125282      PMCID： PMC9584333          DOI： 10.1128/mra.00656-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Unipro UGENE: a unified bioinformatics toolkit.

Authors:  Konstantin Okonechnikov; Olga Golosova; Mikhail Fursov
Journal:  Bioinformatics       Date:  2012-02-24       Impact factor: 6.937

3.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

4.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.

Authors:  Alexander F Auch; Mathias von Jan; Hans-Peter Klenk; Markus Göker
Journal:  Stand Genomic Sci       Date:  2010-01-28

5.  TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.

Authors:  Jan P Meier-Kolthoff; Markus Göker
Journal:  Nat Commun       Date:  2019-05-16       Impact factor: 14.919

6.  The Mode of Action of Bacillus Species against Fusarium graminearum, Tools for Investigation, and Future Prospects.

Authors:  Khayalethu Ntushelo; Lesiba Klaas Ledwaba; Molemi Evelyn Rauwane; Oluwafemi Ayodeji Adebo; Patrick Berka Njobeh
Journal:  Toxins (Basel)       Date:  2019-10-18       Impact factor: 4.546

7.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

9.  Diffusible and Volatile Antifungal Compounds Produced by an Antagonistic Bacillus velezensis G341 against Various Phytopathogenic Fungi.

Authors:  Seong Mi Lim; Mi-Young Yoon; Gyung Ja Choi; Yong Ho Choi; Kyoung Soo Jang; Teak Soo Shin; Hae Woong Park; Nan Hee Yu; Young Ho Kim; Jin-Cheol Kim
Journal:  Plant Pathol J       Date:  2017-10-01       Impact factor: 1.795
  9 in total

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