Literature DB >> 36121231

Complete Genome Sequence of Microbacterium foliorum Bacteriophage Librie.

Sergei A Markov1, Nygil L Arms1, Kayla J Boyce1, Melody R Cardona Pendleton1, Angilena M Couch1, Leigh E Duncan1, Osamiabe I Enodiana1, Jaci N Gibson1, Kendall J Greer1, Claudine M Habib1, Ugonna G Isaac1, Tamia C Johnson1, Gabriella G Lewis1, Summer K Long1, Isela A Ogas1, Kehinde O Olusoga1, Patience O Oni1, Kim-Ngan H Victory1, Robin J Zimmer1.   

Abstract

Bacteriophage Librie was isolated from a soil sample from Clarksville, TN, using the bacterium Microbacterium foliorum. Librie has a 39,941 bp genome with 62 predicted protein-coding genes and 1 predicted gene for tRNA. Based on its gene content similarity to actinobacteriophages, Librie is grouped with phages in cluster EA5.

Entities:  

Year:  2022        PMID： 36121231      PMCID： PMC9583789          DOI： 10.1128/mra.00918-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  PhagesDB: the actinobacteriophage database.

Authors:  Daniel A Russell; Graham F Hatfull
Journal:  Bioinformatics       Date:  2017-03-01       Impact factor: 6.937

3.  Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.

Authors:  Daniel A Russell
Journal:  Methods Mol Biol       Date:  2018

4.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

Review 5.  Actinobacteriophages: Genomics, Dynamics, and Applications.

Authors:  Graham F Hatfull
Journal:  Annu Rev Virol       Date:  2020-09-29       Impact factor: 10.431

6.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

7.  tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.

Authors:  Todd M Lowe; Patricia P Chan
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

8.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

9.  Genomic diversity of bacteriophages infecting Microbacterium spp.

Authors:  Deborah Jacobs-Sera; Lawrence A Abad; Richard M Alvey; Kirk R Anders; Haley G Aull; Suparna S Bhalla; Lawrence S Blumer; David W Bollivar; J Alfred Bonilla; Kristen A Butela; Roy J Coomans; Steven G Cresawn; Tom D'Elia; Arturo Diaz; Ashley M Divens; Nicholas P Edgington; Gregory D Frederick; Maria D Gainey; Rebecca A Garlena; Kenneth W Grant; Susan M R Gurney; Heather L Hendrickson; Lee E Hughes; Margaret A Kenna; Karen K Klyczek; Hari Kotturi; Travis N Mavrich; Angela L McKinney; Evan C Merkhofer; Jordan Moberg Parker; Sally D Molloy; Denise L Monti; Dana A Pape-Zambito; Richard S Pollenz; Welkin H Pope; Nathan S Reyna; Claire A Rinehart; Daniel A Russell; Christopher D Shaffer; Viknesh Sivanathan; Ty H Stoner; Joseph Stukey; C Nicole Sunnen; Sara S Tolsma; Philippos K Tsourkas; Jamie R Wallen; Vassie C Ware; Marcie H Warner; Jacqueline M Washington; Kristi M Westover; JoAnn L Whitefleet-Smith; Helen I Wiersma-Koch; Daniel C Williams; Kira M Zack; Graham F Hatfull
Journal:  PLoS One       Date:  2020-06-18       Impact factor: 3.240

10.  Complete Genome Sequences of Microbacterium Bacteriophages Danno, Otwor, and Scumberland, Isolated in Clarksville, Tennessee.

Authors:  Sergei A Markov; James C Church; Leong Lee; Cole M Bell; Sarah D Binkley; Kevin M Bouma; Kaitlin M Hutson; Gregory S Markov; Elizabeth C Mason; Gabrielle B Rueff; Taiwo O Sennuga; Montana H Simpson; Robin J Zimmer; Diana G Villalpando
Journal:  Microbiol Resour Announc       Date:  2021-04-01
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