| Literature DB >> 36119530 |
Chang Liu1,2, Henan Qin3, Huiying Liu1,2, Tianfu Wei1,2, Zeming Wu4, Mengxue Shang2, Haihua Liu2, Aman Wang3, Jiwei Liu3, Dong Shang1,2,5, Peiyuan Yin1,2.
Abstract
Pancreatic cancer (PC) is burdened with a low 5-year survival rate and high mortality due to a severe lack of early diagnosis methods and slow progress in treatment options. To improve clinical diagnosis and enhance the treatment effects, we applied metabolomics using ultra-high-performance liquid chromatography with a high-resolution mass spectrometer (UHPLC-HRMS) to identify and validate metabolite biomarkers from paired tissue samples of PC patients. Results showed that the metabolic reprogramming of PC mainly featured enhanced amino acid metabolism and inhibited sphingolipid metabolism, which satisfied the energy and biomass requirements for tumorigenesis and progression. The altered metabolism results were confirmed by the significantly changed gene expressions in PC tissues from an online database. A metabolites biomarker panel (six metabolites) was identified for the differential diagnosis between PC tumors and normal pancreatic tissues. The panel biomarker distinguished tumors from normal pancreatic tissues in the discovery group with an area under the curve (AUC) of 1.0 (95%CI, 1.000-1.000). The biomarker panel cutoff was 0.776. In the validation group, an AUC of 0.9000 (95%CI = 0.782-1.000) using the same cutoff, successfully validated the biomarker signature. Moreover, this metabolites panel biomarker had a great capability to predict the overall survival (OS) of PC. Taken together, this metabolomics method identifies and validates metabolite biomarkers that can diagnose the onsite progression and prognosis of PC precisely and sensitively in a clinical setting. It may also help clinicians choose proper therapeutic interventions for different PC patients and improve the survival of PC patients.Entities:
Keywords: Genotype-Tissue Expression (GTEx); The Cancer Genome Atlas (TCGA); biomarker; metabolism; pancreatic cancer; prognosis
Year: 2022 PMID: 36119530 PMCID: PMC9479084 DOI: 10.3389/fonc.2022.991051
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
Figure 1Workflow of the analysis process.
Baseline characteristics of patients with pancreatic cancer.
| Characteristics | N(%) |
|---|---|
|
| |
| Male | 18 (51.4%) |
| Female | 17 (48.6%) |
|
| |
| <60 | 10 (28.6%) |
| ≥60 | 25 (71.4%) |
|
| |
| ≥27 U/ml | 28 (80.0%) |
| <27 U/ml | 7 (20.0%) |
|
| |
| ≥5 ng/ml | 13 (37.1%) |
| <5 ng/ml | 22 (62.9%) |
|
| |
| ≥35 U/ml | 10 (28.6%) |
| <35 U/ml | 25 (71.4%) |
|
| |
| >3 cm | 19 (54.3%) |
| ≤3 cm | 16 (45.7%) |
|
| |
| High | 24 (68.6%) |
| Low | 11 (31.4%) |
|
| |
| No | 18 (51.4%) |
| Yes | 17 (48.6%) |
|
| |
| Yes | 7 (20.0%) |
| No | 28 (80.0%) |
Figure 2Metabolic features of the pancreatic tumor tissues, paired para-carcinoma tissues, and paired normal pancreatic tissues. (A) Orthogonal partial least squares discrimination analysis (OPLS-DA) score scatter plot of pancreatic tumor tissues and normal pancreatic tissues. (B) Heatmap of 233 with significant changes by comparing pancreatic tumor tissues and normal pancreatic tissues. Blue, increased metabolite. Orange, decreased metabolite. (C) KEGG pathway analysis of the 233 significantly changes metabolites mentioned above. (D–I) Metabolites expression in three groups (pancreatic tumor tissues, paired para-carcinoma tissues, and paired normal pancreatic tissues) involved in sphingolipid metabolism (D), linoleic acid metabolism (E), cysteine and methionine metabolism (F), alanine, aspartate, and glutamate metabolism (G), aminoacyl-tRNA biosynthesis (H), and histidine metabolism (I). (J–O) TCGA plus GTEx online results showed that genes differentially expressed in normal and tumor pancreatic tissues are also involved in sphingolipid metabolism (J), linoleic acid metabolism (K), cysteine and methionine metabolism (L), alanine, aspartate, and glutamate metabolism (M), aminoacyl-tRNA biosynthesis (N), and histidine metabolism (O). ****p<0.0001, ***p<0.001, **p<0.01, *p<0.05. ns, p>0.05.
Figure 3Network analysis of significantly changed metabolites and genes that are involved in key metabolic pathways. Blue square, metabolites; pink dot, genes; purple dot, genes or metabolites that did not have close relationships with others were excluded.
Figure 4Metabolic pathways of some significantly changed metabolites and related proteins encoded by significantly changed genes in PC. The blue and red bars represent the corrected responses in the pancreatic tumor tissues and normal pancreatic tissues, respectively; purple, metabolites in TCA cycle. Brown, proteins that catalyze different metabolic changes; green, metabolites involved in amino acids metabolism; orange, metabolites involved in lipids metabolism.
Figure 5Performance of the six-metabolite panel biomarkers in the discrimination and predicting prognosis of PC. (A, B) ROC curve of metabolites panel model for prediction in discovery group (A) and validation group (B). (C) Logistic regression values f(x) for all the patients under the discriminant models. (D) Kaplan–Meier curves of overall survival for all patients using the discriminant model. Red line, patients with f(x) ≥ 0.776; blue line, patients with f(x) < 0.776.
Univariate and multivariate analysis for overall survival of PC patients.
| HR (95% CI) | p-value | |
|---|---|---|
|
| ||
| Model value (<0.776 | 0.355 (0.137–0.920) | 0.033 |
| Gender (female | 0.491 (0.214–1.126) | 0.093 |
| Age(≥60 | 1.777 (0.723–4.364) | 0.210 |
| CA19-9 (U/ml) (≥27 | 1.826 (0.535–6.239) | 0.337 |
| Tumor size (≤3 cm | 0.699 (0.296–1.649) | 0.413 |
| Differentiated degree (low | 0.774 (0.315–1.896) | 0.575 |
| Lymph node metastasis (absent | 0.930 (0.404–2.141) | 0.865 |
| Distant metastasis (absent | 0.369 (0.149–0.909) | 0.030 |
|
| ||
| Model value (<0.776 | 0.161 (0.034–0.756) | 0.021 |
| Gender (female | 0.628 (0.254–1.552) | 0.313 |
| Age(≥60 | 1.836 (0.617–5.465) | 0.275 |
| CA19-9 (U/ml) (≥27 | 0.949 (0.227–3.970) | 0.943 |
| Tumor size (≤3 cm | 1.321 (0.455–3.836) | 0.608 |
| Differentiated degree (low | 1.003 (0.274–3.672) | 0.996 |
| Lymph node metastasis (absent | 0.920 (0.340–2.490) | 0.869 |
| Distant metastasis (absent | 0.257 (0.081–0.813) | 0.021 |