Literature DB >> 36097631

Enhancement of catalytic activity and alkaline stability of cellobiohydrolase by structure-based protein engineering.

Kanoknart Prabmark1, Katewadee Boonyapakron1, Benjarat Bunterngsook1, Nattapol Arunrattanamook1, Tanaporn Uengwetwanit2, Penchit Chitnumsub3, Verawat Champreda1.   

Abstract

Alkaline cellobiohydrolases have the potential for application in various industries, including pulp processing and laundry where operation under high pH conditions is preferred. In this study, variants of CtCel6A cellobiohydrolase from Chaetomium thermophilum were generated by structural-based protein engineering with the rationale of increasing catalytic activity and alkaline stability. The variants included removal of the carbohydrate-binding module (CBM) and substitution of residues 173 and 200. The CBM-deleted enzyme with Y200F mutation predicted to mediate conformational change at the N-terminal loop demonstrated increased alkaline stability at 60 °C, pH 8.0 for 24 h up to 2.25-fold compared with the wild-type enzyme. Another CBM-deleted enzyme with L173E mutation predicted to induce a new hydrogen bond in the substrate-binding cleft showed enhanced hydrolysis yield of pretreated sugarcane trash up to 4.65-fold greater than that of the wild-type enzyme at the pH 8.0. The variant enzymes could thus be developed for applications on cellulose hydrolysis and plant fiber modification operated under alkaline conditions. Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-022-03339-4. © King Abdulaziz City for Science and Technology 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Entities:  

Keywords:  Alkaline stability; Cellobiohydrolase; Pulp and paper; Structure-based protein engineering

Year:  2022        PMID: 36097631      PMCID: PMC9463429          DOI: 10.1007/s13205-022-03339-4

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.893


  45 in total

1.  The carbohydrate-binding module and linker of a modular lytic polysaccharide monooxygenase promote localized cellulose oxidation.

Authors:  Gaston Courtade; Zarah Forsberg; Ellinor B Heggset; Vincent G H Eijsink; Finn L Aachmann
Journal:  J Biol Chem       Date:  2018-07-02       Impact factor: 5.157

2.  An alkaline thermostable recombinant Humicola grisea var. thermoidea cellobiohydrolase presents bifunctional (endo/exoglucanase) activity on cellulosic substrates.

Authors:  G S Oliveira; C J Ulhoa; M H L Silveira; J Andreaus; I Silva-Pereira; M J Poças-Fonseca; F P Faria
Journal:  World J Microbiol Biotechnol       Date:  2012-10-05       Impact factor: 3.312

3.  A bacterial GH6 cellobiohydrolase with a novel modular structure.

Authors:  Liliana Cerda-Mejía; Susana Valeria Valenzuela; Cristina Frías; Pilar Diaz; F I Javier Pastor
Journal:  Appl Microbiol Biotechnol       Date:  2017-01-25       Impact factor: 4.813

4.  Role of cellulose-binding domain of exocellulase I from white rot basidiomycete Irpex lacteus.

Authors:  N Hamada; R Kodaira; M Nogawa; K Shinji; R Ito; Y Amano; M Shimosaka; T Kanda; M Okazaki
Journal:  J Biosci Bioeng       Date:  2001       Impact factor: 2.894

5.  Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis.

Authors:  Valdeir Arantes; Jack N Saddler
Journal:  Biotechnol Biofuels       Date:  2010-02-23       Impact factor: 6.040

Review 6.  Carbohydrate-binding modules: fine-tuning polysaccharide recognition.

Authors:  Alisdair B Boraston; David N Bolam; Harry J Gilbert; Gideon J Davies
Journal:  Biochem J       Date:  2004-09-15       Impact factor: 3.857

7.  Production of Recombinant Trichoderma reesei Cellobiohydrolase II in a New Expression System Based on Wickerhamomyces anomalus.

Authors:  Dennis J Díaz-Rincón; Ivonne Duque; Erika Osorio; Alexander Rodríguez-López; Angela Espejo-Mojica; Claudia M Parra-Giraldo; Raúl A Poutou-Piñales; Carlos J Alméciga-Díaz; Balkys Quevedo-Hidalgo
Journal:  Enzyme Res       Date:  2017-08-30

8.  Structure of the catalytic core module of the Chaetomium thermophilum family GH6 cellobiohydrolase Cel6A.

Authors:  Andrew J Thompson; Tia Heu; Tarana Shaghasi; Romil Benyamino; Aubrey Jones; Esben P Friis; Keith S Wilson; Gideon J Davies
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-07-07

9.  How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity.

Authors:  Fiona Cuskin; James E Flint; Tracey M Gloster; Carl Morland; Arnaud Baslé; Bernard Henrissat; Pedro M Coutinho; Andrea Strazzulli; Alexandra S Solovyova; Gideon J Davies; Harry J Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-03       Impact factor: 11.205

10.  Highly accurate protein structure prediction with AlphaFold.

Authors:  John Jumper; Richard Evans; Alexander Pritzel; Tim Green; Michael Figurnov; Olaf Ronneberger; Kathryn Tunyasuvunakool; Russ Bates; Augustin Žídek; Anna Potapenko; Alex Bridgland; Clemens Meyer; Simon A A Kohl; Andrew J Ballard; Andrew Cowie; Bernardino Romera-Paredes; Stanislav Nikolov; Rishub Jain; Demis Hassabis; Jonas Adler; Trevor Back; Stig Petersen; David Reiman; Ellen Clancy; Michal Zielinski; Martin Steinegger; Michalina Pacholska; Tamas Berghammer; Sebastian Bodenstein; David Silver; Oriol Vinyals; Andrew W Senior; Koray Kavukcuoglu; Pushmeet Kohli
Journal:  Nature       Date:  2021-07-15       Impact factor: 49.962

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