| Literature DB >> 36077905 |
Mohd Hairul Mohd Salleh1,2, Yuzine Esa1,3, Sarahaizad Mohd Salleh4, Shahrul Anuar Mohd Sah4.
Abstract
Approximately 356 species of turtles inhabit saltwater and freshwater habitats globally, except in Antarctica. Twenty-four species of turtles have been reported in Malaysia, four of which are sea turtles. The state of Terengganu harbored the highest number of turtles, with 17 different reported species. Based on the IUCN Red List, 29% of turtle species in Malaysia are critically endangered. In comparison, another 25% are classified as endangered. Likewise, CITES reported that 67% of Malaysia's turtles are threatened, while 25% are classified as critically endangered. This review discusses the checklists, molecular genetics work, conservation status, recent trends, and recommendations for future research. Factors contributing to their population declines and current endangered status are also discussed.Entities:
Keywords: CITES; IUCN Red List; checklist; endangered; genetic; sea turtles; taxonomic
Year: 2022 PMID: 36077905 PMCID: PMC9454601 DOI: 10.3390/ani12172184
Source DB: PubMed Journal: Animals (Basel) ISSN: 2076-2615 Impact factor: 3.231
Figure 1The diversity of turtles in Malaysia.
Genetic markers for molecular turtle research.
| Allozymes | Alleles of a catalyst can be identified by various electrophoretic versatility (usually starch or cellulose acetic acid derivation gels). Since mtDNA haplotypes and microsatellites have become more popular as markers for population genetics and paternity analysis [ |
| Anonymous | Various PCR preliminaries have been created for sea turtles to intensify mysterious single-copy nuclear DNA loci. Variety in intensified items is inspected by RFLP or sequencing and has not been utilized much since microsatellites became the more mainstream nuclear DNA marker [ |
| Microsatellites | Pair rehashes of a 1–6 bp “core” grouping. The evaluation strategy gives single-locus data. Bespoke introductions for PCR intensification are intended for the microsatellite’s flanking areas. The hypervariable idea of a microsatellite is several rehashes of the left change effectively. Moreover, single-locus information implies that more impressive scientific strategies are conceivable than multilocus fingerprinting. It has become a mainstream marker for the population’s genetic qualities. It is a technique for determining paternity in turtles [ |
| Minisatellites | This is the first DNA fingerprinting technique. Dispersed across the nuclear genome are families of tandemly repetitive “minisatellite” regions sharing a 10–15 bp “core” sequence. Variation in the recurrent number is acquired. Moreover, minisatellites are exceptionally polymorphic (hypervariable) as genetic markers at the individual and population levels. It has been used only once for sea turtles since microsatellites became the more common marker [ |
| MtDNA Haplotypes | For sea turtles, it is normal to utilize arrangement variety in the control district of mitochondrial DNA (mtDNA). These are named “haplotypes” because the mitochondrial genome exits as a single copy (haploid). An approximately 400 bp piece is enhanced with a standard arrangement of groundworks. In current examinations, the variety is composed of the improved items by sequencing. More seasoned investigations may utilize Restriction Fragment Length Polymorphism (RFLP) or other fast screening methods. The haplotypes at the Archie Carr Center for Sea Turtle Research are put in order by a normalized classification [ |
| RAPDs | Random Amplified Polymorphic DNA (RAPD). A PCR-based procedure utilizes short (10 bp) oligonucleotide primers in random arrangement to create different PCR results of contrasting sizes isolated on an agarose gel. The multilocus technique was momentarily famous in molecular ecology because of its modest and straightforward convention. However, it tumbled from favor when reproducibility turned into an issue. I am mindful of just one turtle study that utilized it [ |
| RFLP | Restriction Fragment Length Polymorphism (RFLP). Limitation compounds have the potential to cut DNA at explicit acknowledgement groupings. In order to create parts of reproducible size from any substrate DNA particle (nuclear or mitochondrial DNA), they should be be isolated by the electrophoresis process. The variation between individuals in the sizes of DNA fragments is caused by mutations that create or eliminate restriction enzyme recognition sequences and is used as an indication of genetic variation. It was previously popular for assessing mtDNA haplotype variation in turtles, but direct sequencing has largely replaced RFLP. In addition, it was briefly used in turtle studies for anonymous scnDNA [ |
The IUCN Red List classifies species into nine groups [19,100,103].
| Classification | Describtion |
|---|---|
| Not evaluated (NE) | Not yet assessed by the IUCN, they indicate species that have not been reviewed enough to be assigned to a category. |
| Data deficiency (DD) | Offering insufficient information for a proper assessment of conservation status to be made. |
| Least concern (LC) | It is unlikely to become extinct soon. |
| Near threatened (NT) | Close to being at an increased risk of extinction soon. |
| Vulnerable (VU) | It is considered at an increased risk of unnatural (human-caused) extinction without further human intervention. |
| Endangered (EN) | A very high risk of extinction in the wild. |
| Critically endangered (CR) | Points in a particular and extremely critical state. |
| Extinct in the wild (EW) | Point only lives on in zoos, farms, and places outside of its native range, as surveys have shown. |
| Extinct (EX) | Beyond a reasonable doubt, the species is no longer extant. |
Checklist of Turtle Species in Malaysia [21,104].
| Common Name | Scientific Name | GenBank | IUCN Red List Status | CITES | Reference |
|---|---|---|---|---|---|
| Asian Narrow Headed Softshell Turtle |
| HQ329770 | CR | I | [ |
| Hawksbill Turtle |
| GQ152887 | CR | I | [ |
| Southern River Terrapin |
| MN069310 | CR | I | [ |
| Asian Giant Tortoise |
| KP268838 | CR | II | [ |
| Elongated Tortoise |
| KP268857 | CR | II | [ |
| Malaysian Giant Turtle |
| HQ329693 | CR | II | [ |
| Painted Terrapin |
| HQ329672 | CR | II | [ |
| Green Turtle |
| MN124278 | EN | I | [ |
| Asian Giant Softshell Turtle |
| HQ329785 | EN | II | [ |
| Indian Narrow-headed Softshell Turtle |
| HQ329771 | EN | II | [ |
| Malaysian Box Turtle |
| JN860217 | EN | II | [ |
| Spiny Turtle |
| HQ329684 | EN | II | [ |
| Yellow-headed Temple Turtle |
| HQ329681 | EN | II | [ |
| Leatherback Turtle |
| KU883273 | VU | I | [ |
| Olive Ridley Turtle |
| KF894766 | VU | I | [ |
| Asiatic Softshell Turtle |
| HQ329768 | VU | II | [ |
| Black Marsh Turtle |
| HQ329704 | VU | II | [ |
| Impressed Tortoise |
| GQ867670 | VU | II | [ |
| Malayan Flat-shelled Turtle |
| HQ329692 | VU | II | [ |
| Malayan Snail-eating Turtle |
| HQ329686 | VU | II | [ |
| Chinese Softshell Turtle |
| JQ844545 | VU | None | [ |
| Asian Leaf Turtle |
| HQ329676 | NT | II | [ |
| Malayan Softshell Turtle |
| NC_002780 | LC | II | [ |
| Yellow-bellied Slider Turtle |
| JF700194 | LC | None | [ |
Figure 2The critically endangered turtles in Malaysia. Top left to right: Chitra chitra [116], Manouria emys [117], Eretmochelys imbricata [118], Batagur borneensis [119], Indotestudo elongata [120], Orlitia borneensis [121], and Batagur affinis [122].
Figure 3Chart of IUCN Red List status on turtles.
Figure 4Chart of CITES’s appendices on turtles.
Figure 5These threat factors were compiled from IUCN data, the DOF Report, DWNP Report, TRAFFIC South-east Asia Report, species-recovery plans, federal-agency re-sponses, and miscellaneous publica-tions on species’ life history. A complete list of documents used to assign biological attributes to endangered species is available from the authors.
A summary of recommended future research priorities.
| Topic | Method |
|---|---|
| Ecosystem effects | Monitor key turtle habitats to generate baseline data. Mesocosm experiments team up with other research disciplines and industries. Create strategies to identify and measure the trophic exchange of plastic, related poisons, and bioaccumulation. Explore the effect of plastics on the cycle of benthopelagic coupling [ |
| Impacts on nesting beaches | Record perceptions of experiences with seashore garbage for females and hatchlings. Use oceanographic demonstrating to conjecture how and when key waterfront regions are prone to being affected by plastic contamination [ |
| New sites | The purpose of the examination is to recognise new nesting zones, especially if current nesting locales become unsatisfactory because of improvement or environmental-driven change [ |
| Embryology | Developing and assessing a reliable indicator of hatchling health, comprehending endocrine influences on embryology, and further research into the role of home site selection in hatchling development [ |
| Molecular | There are numerous ways to deal with understanding the spatial biology of turtles, |
| counting hereditary qualities [ | |
| Conservation Management | Designing management strategies with SMART (specific, measurable, achievable, realistic and time-based) objectives that permit assessment, variation, and the advancement of proof-based preservation will be critical to deciding the board achievement of current and future ventures [ |
| Climate Change | Understanding cumulative impacts or developing conservation responses to climate change [ |
| Threats | Thought of future dangers and their management in decision processes like horizontal planning [ |
| Habitat Restoration | The carrying capacity of territory is a significant consideration in living space reclamation [ |
| eDNA | Streamlining field techniques for turtle eDNA assortment, further testing primer explicitness through trials of tests containing numerous species’ DNA, and creating primers focusing on other turtle networks could extraordinarily improve the recognition rates of uncommon species [ |
| nDNA | Nnuclear DNA markers (e.g., microsatellites, SNPs) are expected to confirm and further assess the hereditary portrayal of turtles in the EP as the information from mtDNA markers just reflects variety among female genealogies [ |
| Microbiology | Harmful microorganisms such as viruses, bacteria, parasites, and fungus that have not yet been investigated on turtles through metabarcoding, which has the potential to spread among or between hosts. Aside from that, future research could look into the impact of the dominant phylum (Proteobacteria) and genus ( |