Literature DB >> 22750111

Marine turtle mitogenome phylogenetics and evolution.

Sebastián Duchene1, Amy Frey, Alonzo Alfaro-Núñez, Peter H Dutton, M Thomas P Gilbert, Phillip A Morin.   

Abstract

The sea turtles are a group of cretaceous origin containing seven recognized living species: leatherback, hawksbill, Kemp's ridley, olive ridley, loggerhead, green, and flatback. The leatherback is the single member of the Dermochelidae family, whereas all other sea turtles belong in Cheloniidae. Analyses of partial mitochondrial sequences and some nuclear markers have revealed phylogenetic inconsistencies within Cheloniidae, especially regarding the placement of the flatback. Population genetic studies based on D-Loop sequences have shown considerable structuring in species with broad geographic distributions, shedding light on complex migration patterns and possible geographic or climatic events as driving forces of sea-turtle distribution. We have sequenced complete mitogenomes for all sea-turtle species, including samples from their geographic range extremes, and performed phylogenetic analyses to assess sea-turtle evolution with a large molecular dataset. We found variation in the length of the ATP8 gene and a highly variable site in ND4 near a proton translocation channel in the resulting protein. Complete mitogenomes show strong support and resolution for phylogenetic relationships among all sea turtles, and reveal phylogeographic patterns within globally-distributed species. Although there was clear concordance between phylogenies and geographic origin of samples in most taxa, we found evidence of more recent dispersal events in the loggerhead and olive ridley turtles, suggesting more recent migrations (<1 Myr) in these species. Overall, our results demonstrate the complexity of sea-turtle diversity, and indicate the need for further research in phylogeography and molecular evolution. Published by Elsevier Inc.

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Year:  2012        PMID: 22750111     DOI: 10.1016/j.ympev.2012.06.010

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  23 in total

1.  Divergence and hybridization in sea turtles: Inferences from genome data show evidence of ancient gene flow between species.

Authors:  Sibelle Torres Vilaça; Riccardo Piccinno; Omar Rota-Stabelli; Maëva Gabrielli; Andrea Benazzo; Michael Matschiner; Luciano S Soares; Alan B Bolten; Karen A Bjorndal; Giorgio Bertorelle
Journal:  Mol Ecol       Date:  2021-08-30       Impact factor: 6.622

2.  Phylogeography, Genetic Diversity, and Management Units of Hawksbill Turtles in the Indo-Pacific.

Authors:  Sarah M Vargas; Michael P Jensen; Simon Y W Ho; Asghar Mobaraki; Damien Broderick; Jeanne A Mortimer; Scott D Whiting; Jeff Miller; Robert I T Prince; Ian P Bell; Xavier Hoenner; Colin J Limpus; Fabrício R Santos; Nancy N FitzSimmons
Journal:  J Hered       Date:  2015-11-27       Impact factor: 2.645

3.  Detection of high heteroplasmy in complete loggerhead and hawksbill sea turtles mitochondrial genomes using RNAseq.

Authors:  David Delgado-Cano; Leonardo Mariño-Ramírez; Javier Hernández-Fernández
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2021-02-25       Impact factor: 1.514

4.  Species and population specific gene expression in blood transcriptomes of marine turtles.

Authors:  Shreya M Banerjee; Jamie Adkins Stoll; Camryn D Allen; Jennifer M Lynch; Heather S Harris; Lauren Kenyon; Richard E Connon; Eleanor J Sterling; Eugenia Naro-Maciel; Kathryn McFadden; Margaret M Lamont; James Benge; Nadia B Fernandez; Jeffrey A Seminoff; Scott R Benson; Rebecca L Lewison; Tomoharu Eguchi; Tammy M Summers; Jessy R Hapdei; Marc R Rice; Summer Martin; T Todd Jones; Peter H Dutton; George H Balazs; Lisa M Komoroske
Journal:  BMC Genomics       Date:  2021-05-13       Impact factor: 3.969

5.  The head and neck anatomy of sea turtles (Cryptodira: Chelonioidea) and skull shape in Testudines.

Authors:  Marc E H Jones; Ingmar Werneburg; Neil Curtis; Rod Penrose; Paul O'Higgins; Michael J Fagan; Susan E Evans
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

6.  Demographic changes in Pleistocene sea turtles were driven by past sea level fluctuations affecting feeding habitat availability.

Authors:  Jurjan P van der Zee; Marjolijn J A Christianen; Martine Bérubé; Mabel Nava; Sietske van der Wal; Jessica Berkel; Tadzio Bervoets; Melanie Meijer Zu Schlochtern; Leontine E Becking; Per J Palsbøll
Journal:  Mol Ecol       Date:  2021-12-14       Impact factor: 6.622

7.  Population structure and phylogeography reveal pathways of colonization by a migratory marine reptile (Chelonia mydas) in the central and eastern Pacific.

Authors:  Peter H Dutton; Michael P Jensen; Amy Frey; Erin LaCasella; George H Balazs; Patricia Zárate; Omar Chassin-Noria; Adriana Laura Sarti-Martinez; Elizabeth Velez
Journal:  Ecol Evol       Date:  2014-10-25       Impact factor: 2.912

8.  Mitogenomic sequences effectively recover relationships within brush-footed butterflies (Lepidoptera: Nymphalidae).

Authors:  Li-Wei Wu; Li-Hung Lin; David C Lees; Yu-Feng Hsu
Journal:  BMC Genomics       Date:  2014-06-12       Impact factor: 3.969

9.  Geographic patterns of genetic variation in a broadly distributed marine vertebrate: new insights into loggerhead turtle stock structure from expanded mitochondrial DNA sequences.

Authors:  Brian M Shamblin; Alan B Bolten; F Alberto Abreu-Grobois; Karen A Bjorndal; Luis Cardona; Carlos Carreras; Marcel Clusa; Catalina Monzón-Argüello; Campbell J Nairn; Janne T Nielsen; Ronel Nel; Luciano S Soares; Kelly R Stewart; Sibelle T Vilaça; Oguz Türkozan; Can Yilmaz; Peter H Dutton
Journal:  PLoS One       Date:  2014-01-23       Impact factor: 3.240

10.  Phylogeny, biogeography and methodology: a meta-analytic perspective on heterogeneity in adult marine turtle survival rates.

Authors:  Joseph B Pfaller; Milani Chaloupka; Alan B Bolten; Karen A Bjorndal
Journal:  Sci Rep       Date:  2018-04-11       Impact factor: 4.379

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