| Literature DB >> 36072157 |
Abstract
The crystal structure of di-tert-butyl-hydroxido-iodido-tin(IV), [Sn(C4H9)2I(OH)] or t Bu2Sn(OH)I, consists of dimeric, centrosymmetric mol-ecules exhibiting the typical structural features of diorganotin(IV)-hydroxide-halides, R 2Sn(OH)Hal. Two trigonal-bipyramidally coordinated tin(IV) atoms are bridged via two hydroxyl groups, resulting in a planar, four-membered {Sn-O}2 ring of rhombic shape, with acute angles at tin, obtuse angles at oxygen and two different Sn-O distances depending whether the oxygen atom adopts an axial or equatorial position at the tin(IV) atom. In contrast to its fluorine, chlorine and bromine homologues, no hydrogen bonds between the OH group and the halide atom exist, confining the inter-molecular inter-actions to van der Waals forces. © Hans Reuter 2022.Entities:
Keywords: crystal structure; hydrolysis; trigonal-bipyramidal coordination; van-der-Waals interaction
Year: 2022 PMID: 36072157 PMCID: PMC9431778 DOI: 10.1107/S205698902200514X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Ball-and-stick model of the dimeric, centrosymmetric molecule found in the crystal of Bu2Sn(OH)I, with atom numbering of the asymmetric unit. With the exception of the hydrogen atoms that are shown as spheres of arbitrary radius, all other atoms are drawn as displacement ellipsoids at the 40% probability level. The black dot labelled i indicates the position of the centre of symmetry.
Figure 2Ball-and-stick model of the trigonal–bipyramidal coordination environment of the tin atom in the dimeric molecule of Bu2Sn(OH)I with bond lengths (Å) and angles (°) characterizing the polyhedron axes. For clarity, methyl groups of the Bu ligands are stripped down to the carbon–carbon bonds drawn as shortened sticks. Atom O1′ is generated by symmetry code −x, −y + 1, −z + 1.
Figure 3Ball-and-stick model of the four-membered, centrosymmetric {Sn—O}2 ring in the dimeric molecule of Bu2Sn(OH)I with bond lengths (Å) and angles (°) underlining its rhombic shape as the result of axially (ax) and equatorially (eq) bonded O atoms.
Figure 4Space-filling model of the dimeric molecule of Bu2Sn(OH)I showing the OH group wedged in between the iodine atom and the tert-butyl groups. Colour code: I = violet, H = white, C = grey, O = red, Sn = brass-coloured.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯I1 | 0.96 | 2.93 | 3.3862 (14) | 111 |
Figure 5Space-filling model showing the layer-like arrangement of the dimeric [ BuSn(OH)I]2 molecules in the crystal structure. Top: top view; bottom: side view; colour code as in Fig. 4 ▸.
Figure 6Stick-model showing the arrangement of layers with respect to the unit cell; colour code as in Fig. 4 ▸.
Experimental details
| Crystal data | |
| Chemical formula | [Sn(C4H9)2I(OH)] |
|
| 376.82 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.4903 (4), 10.8848 (5), 13.5107 (6) |
| β (°) | 101.881 (2) |
|
| 1221.85 (10) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 4.58 |
| Crystal size (mm) | 0.24 × 0.12 × 0.09 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.457, 0.715 |
| No. of measured, independent and observed [ | 48755, 2950, 2761 |
|
| 0.064 |
| (sin θ/λ)max (Å−1) | 0.661 |
| Refinement | |
|
| 0.016, 0.037, 1.08 |
| No. of reflections | 2950 |
| No. of parameters | 114 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.85, −0.49 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 2006 ▸), Mercury (Macrae et al., 2020 ▸) and publCIF (Westrip, 2010 ▸).
| [Sn(C4H9)2I(OH)] | |
| Monoclinic, | Mo |
| Cell parameters from 9771 reflections | |
| θ = 2.4–29.2° | |
| µ = 4.58 mm−1 | |
| β = 101.881 (2)° | |
| Block, yellow | |
| 0.24 × 0.12 × 0.09 mm |
| Bruker APEXII CCD diffractometer | 2761 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan ( | θmax = 28.0°, θmin = 2.6° |
| 48755 measured reflections | |
| 2950 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.003 | |
| Δρmax = 0.85 e Å−3 | |
| 2950 reflections | Δρmin = −0.49 e Å−3 |
| 114 parameters | Extinction correction: SHELXL-2014/7 (Sheldrick 2015, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.00139 (11) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| I1 | 0.31459 (2) | 0.21150 (2) | 0.53430 (2) | 0.01973 (5) | |
| Sn1 | 0.06240 (2) | 0.37120 (2) | 0.43364 (2) | 0.01006 (5) | |
| C21 | 0.1879 (2) | 0.44568 (19) | 0.32082 (15) | 0.0137 (4) | |
| C22 | 0.2375 (3) | 0.3375 (2) | 0.26155 (17) | 0.0193 (5) | |
| H22A | 0.1409 | 0.2956 | 0.2247 | 0.032 (4)* | |
| H22B | 0.3027 | 0.2798 | 0.3086 | 0.032 (4)* | |
| H22C | 0.3004 | 0.3679 | 0.2135 | 0.032 (4)* | |
| C23 | 0.3377 (3) | 0.5141 (2) | 0.37485 (17) | 0.0190 (4) | |
| H23A | 0.3972 | 0.5445 | 0.3249 | 0.023 (4)* | |
| H23B | 0.4064 | 0.4582 | 0.4218 | 0.023 (4)* | |
| H23C | 0.3059 | 0.5835 | 0.4126 | 0.023 (4)* | |
| C24 | 0.0749 (3) | 0.5304 (2) | 0.24902 (16) | 0.0190 (4) | |
| H24A | 0.1273 | 0.5569 | 0.1944 | 0.027 (4)* | |
| H24B | 0.0495 | 0.6025 | 0.2863 | 0.027 (4)* | |
| H24C | −0.0246 | 0.4863 | 0.2203 | 0.027 (4)* | |
| C11 | −0.1328 (3) | 0.23567 (19) | 0.40781 (16) | 0.0153 (4) | |
| C12 | −0.2895 (3) | 0.2973 (2) | 0.35517 (19) | 0.0233 (5) | |
| H12A | −0.2754 | 0.3331 | 0.2910 | 0.029 (4)* | |
| H12B | −0.3175 | 0.3623 | 0.3987 | 0.029 (4)* | |
| H12C | −0.3759 | 0.2362 | 0.3421 | 0.029 (4)* | |
| C13 | −0.0867 (3) | 0.1346 (2) | 0.34001 (18) | 0.0214 (5) | |
| H13A | −0.0798 | 0.1697 | 0.2742 | 0.028 (4)* | |
| H13B | −0.1687 | 0.0699 | 0.3304 | 0.028 (4)* | |
| H13C | 0.0178 | 0.0997 | 0.3721 | 0.028 (4)* | |
| C14 | −0.1500 (3) | 0.1809 (2) | 0.50925 (18) | 0.0236 (5) | |
| H14A | −0.2351 | 0.1185 | 0.4979 | 0.029 (4)* | |
| H14B | −0.1781 | 0.2461 | 0.5526 | 0.029 (4)* | |
| H14C | −0.0480 | 0.1431 | 0.5423 | 0.029 (4)* | |
| O1 | 0.09927 (17) | 0.46366 (13) | 0.56977 (10) | 0.0150 (3) | |
| H1 | 0.1841 | 0.4272 | 0.6190 | 0.070 (12)* |
| I1 | 0.02092 (9) | 0.01756 (8) | 0.01844 (8) | 0.00750 (5) | −0.00125 (6) | 0.00161 (5) |
| Sn1 | 0.01100 (8) | 0.00881 (8) | 0.01046 (7) | 0.00010 (5) | 0.00239 (5) | −0.00050 (5) |
| C21 | 0.0164 (10) | 0.0130 (10) | 0.0128 (9) | −0.0014 (8) | 0.0051 (8) | −0.0012 (8) |
| C22 | 0.0235 (12) | 0.0175 (11) | 0.0188 (11) | −0.0001 (9) | 0.0085 (9) | −0.0039 (9) |
| C23 | 0.0180 (11) | 0.0196 (11) | 0.0206 (11) | −0.0048 (9) | 0.0067 (9) | −0.0020 (9) |
| C24 | 0.0236 (11) | 0.0176 (11) | 0.0158 (10) | 0.0020 (9) | 0.0040 (9) | 0.0041 (8) |
| C11 | 0.0170 (10) | 0.0131 (10) | 0.0171 (10) | −0.0037 (8) | 0.0064 (8) | −0.0040 (8) |
| C12 | 0.0153 (11) | 0.0226 (12) | 0.0308 (13) | −0.0029 (9) | 0.0018 (9) | −0.0057 (10) |
| C13 | 0.0223 (12) | 0.0173 (11) | 0.0255 (12) | −0.0036 (9) | 0.0070 (9) | −0.0083 (9) |
| C14 | 0.0295 (13) | 0.0198 (12) | 0.0250 (12) | −0.0054 (10) | 0.0135 (10) | 0.0012 (9) |
| O1 | 0.0166 (7) | 0.0147 (7) | 0.0126 (7) | 0.0047 (6) | 0.0004 (6) | −0.0021 (6) |
| I1—Sn1 | 2.8734 (2) | C24—H24C | 0.9800 |
| Sn1—O1 | 2.0631 (1) | C11—C12 | 1.528 (3) |
| Sn1—C21 | 2.187 (2) | C11—C14 | 1.529 (3) |
| Sn1—C11 | 2.193 (2) | C11—C13 | 1.533 (3) |
| Sn1—O1i | 2.2564 (1) | C12—H12A | 0.9800 |
| C21—C23 | 1.524 (3) | C12—H12B | 0.9800 |
| C21—C24 | 1.526 (3) | C12—H12C | 0.9800 |
| C21—C22 | 1.531 (3) | C13—H13A | 0.9800 |
| C22—H22A | 0.9800 | C13—H13B | 0.9800 |
| C22—H22B | 0.9800 | C13—H13C | 0.9800 |
| C22—H22C | 0.9800 | C14—H14A | 0.9800 |
| C23—H23A | 0.9800 | C14—H14B | 0.9800 |
| C23—H23B | 0.9800 | C14—H14C | 0.9800 |
| C23—H23C | 0.9800 | O1—Sn1i | 2.2563 (14) |
| C24—H24A | 0.9800 | O1—H1 | 0.9600 |
| C24—H24B | 0.9800 | ||
| O1—Sn1—C21 | 115.73 (7) | C21—C24—H24C | 109.5 |
| O1—Sn1—C11 | 116.17 (7) | H24A—C24—H24C | 109.5 |
| C21—Sn1—C11 | 126.81 (8) | H24B—C24—H24C | 109.5 |
| O1—Sn1—O1i | 67.02 (6) | C12—C11—C14 | 110.71 (19) |
| C21—Sn1—O1i | 94.13 (7) | C12—C11—C13 | 109.99 (18) |
| C11—Sn1—O1i | 95.51 (7) | C14—C11—C13 | 109.84 (19) |
| O1—Sn1—I1 | 84.93 (4) | C12—C11—Sn1 | 109.60 (14) |
| C21—Sn1—I1 | 97.57 (5) | C14—C11—Sn1 | 109.16 (14) |
| C11—Sn1—I1 | 97.67 (6) | C13—C11—Sn1 | 107.47 (14) |
| O1i—Sn1—I1 | 151.94 (4) | C11—C12—H12A | 109.5 |
| C23—C21—C24 | 111.25 (18) | C11—C12—H12B | 109.5 |
| C23—C21—C22 | 109.50 (17) | H12A—C12—H12B | 109.5 |
| C24—C21—C22 | 109.69 (17) | C11—C12—H12C | 109.5 |
| C23—C21—Sn1 | 109.00 (13) | H12A—C12—H12C | 109.5 |
| C24—C21—Sn1 | 109.55 (13) | H12B—C12—H12C | 109.5 |
| C22—C21—Sn1 | 107.78 (14) | C11—C13—H13A | 109.5 |
| C21—C22—H22A | 109.5 | C11—C13—H13B | 109.5 |
| C21—C22—H22B | 109.5 | H13A—C13—H13B | 109.5 |
| H22A—C22—H22B | 109.5 | C11—C13—H13C | 109.5 |
| C21—C22—H22C | 109.5 | H13A—C13—H13C | 109.5 |
| H22A—C22—H22C | 109.5 | H13B—C13—H13C | 109.5 |
| H22B—C22—H22C | 109.5 | C11—C14—H14A | 109.5 |
| C21—C23—H23A | 109.5 | C11—C14—H14B | 109.5 |
| C21—C23—H23B | 109.5 | H14A—C14—H14B | 109.5 |
| H23A—C23—H23B | 109.5 | C11—C14—H14C | 109.5 |
| C21—C23—H23C | 109.5 | H14A—C14—H14C | 109.5 |
| H23A—C23—H23C | 109.5 | H14B—C14—H14C | 109.5 |
| H23B—C23—H23C | 109.5 | Sn1—O1—Sn1i | 112.98 (6) |
| C21—C24—H24A | 109.5 | Sn1—O1—H1 | 111.7 |
| C21—C24—H24B | 109.5 | Sn1i—O1—H1 | 135.3 |
| H24A—C24—H24B | 109.5 |
| H··· | ||||
| O1—H1···I1 | 0.96 | 2.93 | 3.3862 (14) | 111 |