| Literature DB >> 36072150 |
Maryam Ali Magrashi1, Elham Shafik Aazam1.
Abstract
The structure of the title mol-ecular complex, C16H11N·2C10H10O4, at 150 K has been determined. The mol-ecules form stacks consisting of aggregates with disordered 1-amino-pyrene mol-ecule surrounded by two 4,6-di-acetyl-resorcinol mol-ecules. Neighbouring stacks are linked by hydrogen bonds between the amine H atoms of the 1-amino-pyrene mol-ecule with the adjacent carbonyl oxygen atom of the 4,6-di-acetyl-resorcinol mol-ecule. © Magrashi and Aazam 2022.Entities:
Keywords: co-crystal; crystal structure; disorder; hydrogen bonds; stacking interactions
Year: 2022 PMID: 36072150 PMCID: PMC9431801 DOI: 10.1107/S2056989022005588
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of the title compound with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O1 | 0.85 (3) | 1.80 (3) | 2.545 (2) | 146 (2) |
| O3—H3⋯O4 | 0.84 (2) | 1.80 (2) | 2.542 (2) | 147 (2) |
| N1—H1 | 0.88 (1) | 2.30 (2) | 3.131 (3) | 156 (4) |
| N1—H1 | 0.88 (1) | 2.16 (2) | 2.966 (3) | 154 (3) |
| N1 | 0.88 (1) | 2.05 (6) | 2.902 (18) | 162 (17) |
| N1 | 0.88 (1) | 1.89 (6) | 2.731 (18) | 159 (14) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2A view of the crystal packing showing the π–π stacking interactions.
Figure 3The crystal packing of the title compound viewed along the b axis, showing the N—H⋯O hydrogen bonds.
Experimental details
| Crystal data | |
| Chemical formula | C16H11N·2C10H10O4 |
|
| 605.62 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 150 |
|
| 18.7222 (14), 9.7870 (6), 16.9398 (15) |
| β (°) | 113.758 (4) |
|
| 2840.9 (4) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.10 |
| Crystal size (mm) | 0.45 × 0.26 × 0.22 |
| Data collection | |
| Diffractometer | Bruker AXS D8 Quest diffractometer with PhotonII charge-integrating pixel array detector (CPAD) |
| Absorption correction | Multi-scan ( |
|
| 0.673, 0.747 |
| No. of measured, independent and observed [ | 33773, 4316, 3741 |
|
| 0.046 |
| (sin θ/λ)max (Å−1) | 0.714 |
| Refinement | |
|
| 0.061, 0.153, 1.15 |
| No. of reflections | 4316 |
| No. of parameters | 231 |
| No. of restraints | 13 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.35, −0.26 |
Computer programs: APEX4 and SAINT (Bruker, 2021 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2019/2 (Sheldrick, 2015b ▸), ShelXle (Hübschle et al., 2011 ▸) and publCIF (Westrip, 2010 ▸).
| C16H11N·2C10H10O4 | |
| Monoclinic, | Mo |
| Cell parameters from 9850 reflections | |
| θ = 2.4–33.2° | |
| µ = 0.10 mm−1 | |
| β = 113.758 (4)° | |
| Block, yellow | |
| 0.45 × 0.26 × 0.22 mm |
| Bruker AXS D8 Quest diffractometer with PhotonII charge-integrating pixel array detector (CPAD) | 4316 independent reflections |
| Radiation source: fine focus sealed tube X-ray source | 3741 reflections with |
| Triumph curved graphite crystal monochromator | |
| Detector resolution: 7.4074 pixels mm-1 | θmax = 30.5°, θmin = 2.5° |
| ω and phi scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 33773 measured reflections |
| Refinement on | Primary atom site location: dual |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4316 reflections | (Δ/σ)max < 0.001 |
| 231 parameters | Δρmax = 0.35 e Å−3 |
| 13 restraints | Δρmin = −0.26 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. The single nitrogen atom is disordered over four chemically equivalent positions (each two are also crystallographically equivalent, by inversion). The C-N bond distances were restrained to be similar. The minor N atom was constrained to have the same ADP as the C atom it is bonded to. The N-H bond distances were restrained to a target value of 0.88 (2) Angstrom, and the H-N-H and C-N-H bond angles were each restrained to be similar to each other. Subject to these conditions the occupancy rates refined to two times 0.428 (2) and two times 0.072 (2). |
| Occ. (<1) | |||||
| O1 | 0.65970 (9) | 0.27504 (17) | 0.27887 (8) | 0.0435 (4) | |
| O2 | 0.73863 (8) | 0.46240 (16) | 0.24707 (9) | 0.0406 (3) | |
| H2 | 0.7158 (15) | 0.422 (3) | 0.2746 (11) | 0.061* | |
| O3 | 0.73548 (7) | 0.49314 (13) | −0.02964 (9) | 0.0318 (3) | |
| H3 | 0.7141 (13) | 0.459 (2) | −0.0788 (16) | 0.048* | |
| O4 | 0.65513 (7) | 0.32200 (14) | −0.14377 (8) | 0.0333 (3) | |
| N1 | 0.63242 (19) | 0.2052 (3) | 0.43483 (19) | 0.0232 (6) | 0.428 (2) |
| H1A | 0.6785 (13) | 0.167 (4) | 0.462 (2) | 0.028* | 0.428 (2) |
| H1B | 0.636 (3) | 0.252 (3) | 0.3924 (19) | 0.028* | 0.428 (2) |
| N1B | 0.6296 (10) | 0.2240 (18) | 0.6962 (10) | 0.0255 (3) | 0.072 (2) |
| H1C | 0.676 (5) | 0.184 (17) | 0.716 (6) | 0.031* | 0.072 (2) |
| H1D | 0.625 (10) | 0.261 (10) | 0.741 (4) | 0.031* | 0.072 (2) |
| C1 | 0.63682 (10) | 0.23098 (19) | 0.20409 (11) | 0.0303 (4) | |
| C2 | 0.58258 (12) | 0.1108 (2) | 0.17814 (13) | 0.0392 (4) | |
| H2A | 0.535960 | 0.134104 | 0.126697 | 0.059* | |
| H2B | 0.567315 | 0.086926 | 0.225370 | 0.059* | |
| H2C | 0.609006 | 0.032779 | 0.165398 | 0.059* | |
| C3 | 0.66261 (9) | 0.29590 (16) | 0.14205 (9) | 0.0232 (3) | |
| C4 | 0.71264 (9) | 0.41203 (17) | 0.16646 (10) | 0.0264 (3) | |
| C5 | 0.73613 (9) | 0.47613 (17) | 0.10833 (11) | 0.0265 (3) | |
| H5 | 0.769710 | 0.553232 | 0.125827 | 0.032* | |
| C6 | 0.71078 (8) | 0.42813 (15) | 0.02447 (10) | 0.0228 (3) | |
| C7 | 0.66054 (8) | 0.31225 (15) | −0.00255 (9) | 0.0194 (3) | |
| C8 | 0.63794 (8) | 0.24981 (15) | 0.05741 (9) | 0.0206 (3) | |
| H8 | 0.604356 | 0.172691 | 0.039992 | 0.025* | |
| C9 | 0.63396 (9) | 0.26350 (17) | −0.09192 (10) | 0.0242 (3) | |
| C10 | 0.58093 (10) | 0.1419 (2) | −0.12108 (12) | 0.0339 (4) | |
| H10A | 0.568838 | 0.123625 | −0.182006 | 0.051* | |
| H10B | 0.532509 | 0.160674 | −0.113824 | 0.051* | |
| H10C | 0.606809 | 0.062098 | −0.086448 | 0.051* | |
| C11 | 0.60624 (9) | 0.27031 (15) | 0.48402 (10) | 0.0237 (3) | |
| H11 | 0.624879 | 0.227360 | 0.445699 | 0.028* | 0.572 (2) |
| C12 | 0.63162 (9) | 0.22506 (16) | 0.56916 (11) | 0.0283 (3) | |
| H12 | 0.666448 | 0.149723 | 0.587700 | 0.034* | |
| C13 | 0.60710 (9) | 0.28760 (16) | 0.62685 (10) | 0.0255 (3) | |
| H13 | 0.625984 | 0.256168 | 0.684761 | 0.031* | 0.928 (2) |
| C14 | 0.55427 (8) | 0.39772 (15) | 0.60056 (9) | 0.0207 (3) | |
| C15 | 0.52761 (9) | 0.46518 (16) | 0.65871 (9) | 0.0240 (3) | |
| H15 | 0.546435 | 0.435794 | 0.717036 | 0.029* | |
| C16 | 0.47590 (9) | 0.57043 (16) | 0.63217 (9) | 0.0232 (3) | |
| H16 | 0.458483 | 0.611875 | 0.671966 | 0.028* | |
| C17 | 0.44718 (8) | 0.61998 (15) | 0.54519 (9) | 0.0196 (3) | |
| C18 | 0.47321 (8) | 0.55597 (14) | 0.48616 (9) | 0.0174 (3) |
| O1 | 0.0494 (8) | 0.0610 (10) | 0.0232 (6) | 0.0200 (7) | 0.0178 (6) | 0.0096 (6) |
| O2 | 0.0380 (7) | 0.0502 (9) | 0.0258 (6) | 0.0040 (6) | 0.0048 (5) | −0.0143 (6) |
| O3 | 0.0326 (6) | 0.0283 (6) | 0.0415 (7) | −0.0002 (5) | 0.0223 (6) | 0.0058 (5) |
| O4 | 0.0363 (6) | 0.0425 (7) | 0.0241 (6) | 0.0130 (6) | 0.0153 (5) | 0.0058 (5) |
| N1 | 0.0294 (15) | 0.0217 (14) | 0.0224 (14) | 0.0077 (11) | 0.0147 (12) | 0.0002 (11) |
| N1B | 0.0237 (7) | 0.0230 (7) | 0.0254 (7) | −0.0008 (5) | 0.0052 (6) | 0.0077 (6) |
| C1 | 0.0299 (8) | 0.0382 (9) | 0.0254 (7) | 0.0158 (7) | 0.0137 (6) | 0.0107 (7) |
| C2 | 0.0421 (10) | 0.0399 (10) | 0.0448 (10) | 0.0109 (8) | 0.0270 (9) | 0.0204 (8) |
| C3 | 0.0221 (6) | 0.0265 (7) | 0.0211 (6) | 0.0074 (5) | 0.0087 (5) | 0.0025 (5) |
| C4 | 0.0207 (7) | 0.0296 (8) | 0.0242 (7) | 0.0067 (6) | 0.0039 (5) | −0.0056 (6) |
| C5 | 0.0188 (6) | 0.0233 (7) | 0.0346 (8) | −0.0001 (5) | 0.0078 (6) | −0.0063 (6) |
| C6 | 0.0176 (6) | 0.0205 (6) | 0.0314 (7) | 0.0043 (5) | 0.0111 (5) | 0.0021 (6) |
| C7 | 0.0170 (6) | 0.0205 (6) | 0.0202 (6) | 0.0038 (5) | 0.0071 (5) | −0.0006 (5) |
| C8 | 0.0189 (6) | 0.0194 (6) | 0.0236 (7) | 0.0027 (5) | 0.0086 (5) | 0.0001 (5) |
| C9 | 0.0211 (6) | 0.0274 (7) | 0.0221 (7) | 0.0090 (5) | 0.0067 (5) | −0.0008 (6) |
| C10 | 0.0278 (8) | 0.0369 (9) | 0.0321 (8) | 0.0013 (7) | 0.0067 (6) | −0.0151 (7) |
| C11 | 0.0222 (6) | 0.0194 (6) | 0.0305 (7) | −0.0009 (5) | 0.0117 (6) | −0.0020 (6) |
| C12 | 0.0236 (7) | 0.0205 (7) | 0.0372 (9) | 0.0021 (5) | 0.0084 (6) | 0.0054 (6) |
| C13 | 0.0237 (7) | 0.0230 (7) | 0.0254 (7) | −0.0008 (5) | 0.0052 (6) | 0.0077 (6) |
| C14 | 0.0184 (6) | 0.0217 (7) | 0.0205 (6) | −0.0035 (5) | 0.0065 (5) | 0.0032 (5) |
| C15 | 0.0240 (7) | 0.0291 (8) | 0.0178 (6) | −0.0041 (6) | 0.0074 (5) | 0.0021 (5) |
| C16 | 0.0241 (7) | 0.0275 (7) | 0.0190 (6) | −0.0045 (6) | 0.0100 (5) | −0.0016 (5) |
| C17 | 0.0188 (6) | 0.0187 (6) | 0.0213 (6) | −0.0036 (5) | 0.0081 (5) | −0.0010 (5) |
| C18 | 0.0157 (6) | 0.0171 (6) | 0.0186 (6) | −0.0036 (5) | 0.0060 (5) | −0.0002 (5) |
| O1—C1 | 1.240 (2) | C7—C8 | 1.389 (2) |
| O2—C4 | 1.3450 (19) | C7—C9 | 1.470 (2) |
| O2—H2 | 0.84 (3) | C8—H8 | 0.9500 |
| O3—C6 | 1.3418 (19) | C9—C10 | 1.500 (2) |
| O3—H3 | 0.83 (3) | C10—H10A | 0.9800 |
| O4—C9 | 1.240 (2) | C10—H10B | 0.9800 |
| N1—C11 | 1.292 (3) | C10—H10C | 0.9800 |
| N1—H1A | 0.882 (10) | C11—C12 | 1.396 (2) |
| N1—H1B | 0.875 (10) | C11—C17i | 1.414 (2) |
| N1B—C13 | 1.243 (14) | C11—H11 | 0.9500 |
| N1B—H1C | 0.882 (10) | C12—C13 | 1.379 (2) |
| N1B—H1D | 0.880 (10) | C12—H12 | 0.9500 |
| C1—C3 | 1.467 (2) | C13—C14 | 1.408 (2) |
| C1—C2 | 1.500 (3) | C13—H13 | 0.9500 |
| C2—H2A | 0.9800 | C14—C18i | 1.4210 (19) |
| C2—H2B | 0.9800 | C14—C15 | 1.432 (2) |
| C2—H2C | 0.9800 | C15—C16 | 1.360 (2) |
| C3—C8 | 1.392 (2) | C15—H15 | 0.9500 |
| C3—C4 | 1.424 (2) | C16—C17 | 1.434 (2) |
| C4—C5 | 1.380 (2) | C16—H16 | 0.9500 |
| C5—C6 | 1.386 (2) | C17—C18 | 1.4220 (19) |
| C5—H5 | 0.9500 | C18—C18i | 1.431 (3) |
| C6—C7 | 1.426 (2) | ||
| C4—O2—H2 | 109.5 | O4—C9—C10 | 119.42 (15) |
| C6—O3—H3 | 109.5 | C7—C9—C10 | 120.08 (14) |
| C11—N1—H1A | 114 (2) | C9—C10—H10A | 109.5 |
| C11—N1—H1B | 116 (2) | C9—C10—H10B | 109.5 |
| H1A—N1—H1B | 106 (4) | H10A—C10—H10B | 109.5 |
| C13—N1B—H1C | 120 (3) | C9—C10—H10C | 109.5 |
| C13—N1B—H1D | 120 (3) | H10A—C10—H10C | 109.5 |
| H1C—N1B—H1D | 106 (5) | H10B—C10—H10C | 109.5 |
| O1—C1—C3 | 120.23 (18) | N1—C11—C12 | 116.75 (19) |
| O1—C1—C2 | 119.14 (16) | N1—C11—C17i | 123.18 (19) |
| C3—C1—C2 | 120.63 (15) | C12—C11—C17i | 120.05 (14) |
| C1—C2—H2A | 109.5 | C12—C11—H11 | 120.0 |
| C1—C2—H2B | 109.5 | C17i—C11—H11 | 120.0 |
| H2A—C2—H2B | 109.5 | C13—C12—C11 | 121.28 (14) |
| C1—C2—H2C | 109.5 | C13—C12—H12 | 119.4 |
| H2A—C2—H2C | 109.5 | C11—C12—H12 | 119.4 |
| H2B—C2—H2C | 109.5 | N1B—C13—C12 | 111.3 (10) |
| C8—C3—C4 | 117.66 (14) | N1B—C13—C14 | 127.6 (10) |
| C8—C3—C1 | 121.95 (15) | C12—C13—C14 | 120.49 (14) |
| C4—C3—C1 | 120.37 (15) | C12—C13—H13 | 119.8 |
| O2—C4—C5 | 117.95 (16) | C14—C13—H13 | 119.8 |
| O2—C4—C3 | 120.93 (16) | C13—C14—C18i | 119.12 (14) |
| C5—C4—C3 | 121.12 (14) | C13—C14—C15 | 122.02 (14) |
| C4—C5—C6 | 120.08 (15) | C18i—C14—C15 | 118.86 (13) |
| C4—C5—H5 | 120.0 | C16—C15—C14 | 121.37 (14) |
| C6—C5—H5 | 120.0 | C16—C15—H15 | 119.3 |
| O3—C6—C5 | 118.00 (15) | C14—C15—H15 | 119.3 |
| O3—C6—C7 | 121.48 (14) | C15—C16—C17 | 121.20 (14) |
| C5—C6—C7 | 120.52 (14) | C15—C16—H16 | 119.4 |
| C8—C7—C6 | 118.10 (13) | C17—C16—H16 | 119.4 |
| C8—C7—C9 | 122.26 (14) | C11i—C17—C18 | 118.88 (13) |
| C6—C7—C9 | 119.65 (14) | C11i—C17—C16 | 122.40 (14) |
| C7—C8—C3 | 122.53 (14) | C18—C17—C16 | 118.72 (13) |
| C7—C8—H8 | 118.7 | C14i—C18—C17 | 120.17 (13) |
| C3—C8—H8 | 118.7 | C14i—C18—C18i | 119.80 (16) |
| O4—C9—C7 | 120.50 (15) | C17—C18—C18i | 120.04 (16) |
| O1—C1—C3—C8 | −179.71 (15) | C6—C7—C9—O4 | 0.3 (2) |
| C2—C1—C3—C8 | 0.3 (2) | C8—C7—C9—C10 | −0.3 (2) |
| O1—C1—C3—C4 | −1.5 (2) | C6—C7—C9—C10 | −179.83 (13) |
| C2—C1—C3—C4 | 178.49 (14) | N1—C11—C12—C13 | 180.0 (2) |
| C8—C3—C4—O2 | 179.86 (14) | C17i—C11—C12—C13 | −1.6 (2) |
| C1—C3—C4—O2 | 1.6 (2) | C11—C12—C13—N1B | 173.1 (9) |
| C8—C3—C4—C5 | −0.3 (2) | C11—C12—C13—C14 | 1.3 (2) |
| C1—C3—C4—C5 | −178.61 (14) | N1B—C13—C14—C18i | −170.7 (11) |
| O2—C4—C5—C6 | −179.90 (14) | C12—C13—C14—C18i | −0.3 (2) |
| C3—C4—C5—C6 | 0.3 (2) | N1B—C13—C14—C15 | 9.6 (11) |
| C4—C5—C6—O3 | −179.61 (14) | C12—C13—C14—C15 | −179.94 (14) |
| C4—C5—C6—C7 | −0.2 (2) | C13—C14—C15—C16 | −179.26 (14) |
| O3—C6—C7—C8 | 179.53 (13) | C18i—C14—C15—C16 | 1.1 (2) |
| C5—C6—C7—C8 | 0.1 (2) | C14—C15—C16—C17 | −1.3 (2) |
| O3—C6—C7—C9 | −1.0 (2) | C15—C16—C17—C11i | −179.63 (14) |
| C5—C6—C7—C9 | 179.64 (13) | C15—C16—C17—C18 | 0.6 (2) |
| C6—C7—C8—C3 | −0.2 (2) | C11i—C17—C18—C14i | 0.1 (2) |
| C9—C7—C8—C3 | −179.68 (13) | C16—C17—C18—C14i | 179.82 (13) |
| C4—C3—C8—C7 | 0.3 (2) | C11i—C17—C18—C18i | −179.52 (15) |
| C1—C3—C8—C7 | 178.53 (13) | C16—C17—C18—C18i | 0.2 (2) |
| C8—C7—C9—O4 | 179.78 (14) |
| H··· | ||||
| O2—H2···O1 | 0.85 (3) | 1.80 (3) | 2.545 (2) | 146 (2) |
| O3—H3···O4 | 0.84 (2) | 1.80 (2) | 2.542 (2) | 147 (2) |
| N1—H1 | 0.88 (1) | 2.30 (2) | 3.131 (3) | 156 (4) |
| N1—H1 | 0.88 (1) | 2.16 (2) | 2.966 (3) | 154 (3) |
| N1 | 0.88 (1) | 2.05 (6) | 2.902 (18) | 162 (17) |
| N1 | 0.88 (1) | 1.89 (6) | 2.731 (18) | 159 (14) |