| Literature DB >> 36072145 |
Augusto Rivera1, Jaime Ríos-Motta1, Michael Bolte2.
Abstract
The title compound, C8H16N4·2C11H16O, was synthesized from the corres-ponding sterically crowded phenol by treatment with the aminal cage polyamine. Single-crystal X-ray diffraction structural analysis revealed the three-mol-ecule aggregate to crystallize in the monoclinic space group P2/c with one half of a 1,3,6,8-tetra-aztri-cyclo-[4.4.1.13,8]dodecane (TATD) mol-ecule and one 2-tert-butyl-4-methyl-phenol mol-ecule per asymmetric unit. The crystal structure features inter-molecular O-H⋯N and C-H⋯O hydrogen bonds, as well as inter-molecular C-H⋯π inter-actions. © Rivera et al. 2022.Entities:
Keywords: C—H⋯π interactions; TATD; TBMP; co-crystalline adduct; crystal structure; hydrogen bonding
Year: 2022 PMID: 36072145 PMCID: PMC9431775 DOI: 10.1107/S2056989022004972
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C11–C16 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1 | 0.88 (2) | 2.01 (2) | 2.8534 (15) | 161.6 (17) |
| C18—H18 | 0.98 | 2.30 | 2.966 (2) | 124 |
| C20—H20 | 0.98 | 2.41 | 3.058 (3) | 124 |
| C1—H1 | 0.98 | 2.90 | 3.851 (2) | 163 |
Symmetry code: (i) .
Figure 1A view of the molecular structure of the title compound, showing the atom-labelling scheme, with displacement ellipsoids drawn at the 50% probability. H atoms bonded to C atoms are omitted for clarity. Hydrogen bonds are drawn as dashed lines. Atoms labelled with the suffix A are generated using the symmetry operator (−x, y, −z + ).
Figure 2The crystal packing of the title compound viewed roughly along the b-axis direction, showing the intermolecular O—H⋯N hydrogen bonds and selected C—H⋯π interactions.
Figure 3A partial packing diagram viewed along [101] direction. Dashed lines indicate the intermolecular O—H⋯N hydrogen bonds. Only H atoms involved in the hydrogen bonds are shown for clarity.
Experimental details
| Crystal data | |
| Chemical formula | C8H16N4·2C11H16O |
|
| 496.72 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 173 |
|
| 11.4741 (10), 7.6770 (5), 17.2226 (14) |
| β (°) | 108.166 (6) |
|
| 1441.5 (2) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.07 |
| Crystal size (mm) | 0.28 × 0.27 × 0.11 |
| Data collection | |
| Diffractometer | Stoe IPDS II two-circle |
| Absorption correction | Multi-scan ( |
|
| 0.554, 1.000 |
| No. of measured, independent and observed [ | 17127, 3307, 2862 |
|
| 0.029 |
| (sin θ/λ)max (Å−1) | 0.653 |
| Refinement | |
|
| 0.050, 0.132, 1.05 |
| No. of reflections | 3307 |
| No. of parameters | 170 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.26, −0.19 |
Computer programs: X-AREA (Stoe & Cie, 2001 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL (Sheldrick, 2015 ▸) and XP in SHELXTL-Plus (Sheldrick, 2008 ▸).
| C8H16N4·2C11H16O | |
| Monoclinic, | Mo |
| Cell parameters from 17127 reflections | |
| θ = 3.6–27.8° | |
| µ = 0.07 mm−1 | |
| β = 108.166 (6)° | |
| Plate, colourless | |
| 0.28 × 0.27 × 0.11 mm |
| STOE IPDS II two-circle-diffractometer | 2862 reflections with |
| Radiation source: Genix 3D IµS microfocus X-ray source | |
| ω scans | θmax = 27.6°, θmin = 3.6° |
| Absorption correction: multi-scan (X-Area; Stoe & Cie, 2001) | |
| 17127 measured reflections | |
| 3307 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.26 e Å−3 | |
| 3307 reflections | Δρmin = −0.19 e Å−3 |
| 170 parameters | Extinction correction: SHELXL-2016/6 (Sheldrick 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.021 (5) |
| Primary atom site location: structure-invariant direct methods |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| N1 | 0.55515 (9) | 0.67062 (14) | 0.32614 (6) | 0.0269 (2) | |
| N2 | 0.41669 (11) | 0.93222 (15) | 0.28288 (7) | 0.0334 (3) | |
| C1 | 0.47468 (13) | 0.80357 (18) | 0.34461 (8) | 0.0332 (3) | |
| H1A | 0.408781 | 0.741591 | 0.359229 | 0.040* | |
| H1B | 0.523629 | 0.867230 | 0.394010 | 0.040* | |
| C2 | 0.30542 (14) | 0.8720 (2) | 0.22156 (10) | 0.0469 (4) | |
| H2A | 0.265533 | 0.973760 | 0.188590 | 0.056* | |
| H2B | 0.248788 | 0.828122 | 0.250249 | 0.056* | |
| C3 | 0.31959 (13) | 0.7318 (2) | 0.16366 (9) | 0.0397 (3) | |
| H3A | 0.269762 | 0.630216 | 0.169446 | 0.048* | |
| H3B | 0.284425 | 0.775888 | 0.107144 | 0.048* | |
| C4 | 0.500000 | 1.0300 (3) | 0.250000 | 0.0418 (5) | |
| H4A | 0.449637 | 1.106627 | 0.206038 | 0.050* | 0.5 |
| H4B | 0.550362 | 1.106630 | 0.293961 | 0.050* | 0.5 |
| C5 | 0.500000 | 0.5738 (2) | 0.250000 | 0.0282 (4) | |
| H5A | 0.435761 | 0.497108 | 0.258605 | 0.034* | 0.5 |
| H5B | 0.564238 | 0.497107 | 0.241395 | 0.034* | 0.5 |
| O1 | 0.65236 (10) | 0.40303 (14) | 0.44346 (6) | 0.0399 (3) | |
| H1 | 0.6079 (18) | 0.482 (3) | 0.4109 (12) | 0.053 (5)* | |
| C11 | 0.69530 (12) | 0.46490 (16) | 0.52226 (7) | 0.0284 (3) | |
| C12 | 0.79366 (11) | 0.37879 (15) | 0.57928 (7) | 0.0247 (3) | |
| C13 | 0.83508 (11) | 0.45122 (17) | 0.65783 (7) | 0.0280 (3) | |
| H13 | 0.901687 | 0.396088 | 0.697378 | 0.034* | |
| C14 | 0.78431 (12) | 0.59956 (17) | 0.68142 (8) | 0.0303 (3) | |
| C15 | 0.68468 (14) | 0.67652 (18) | 0.62418 (8) | 0.0343 (3) | |
| H15 | 0.646455 | 0.775572 | 0.638772 | 0.041* | |
| C16 | 0.64080 (14) | 0.60914 (18) | 0.54571 (8) | 0.0350 (3) | |
| H16 | 0.572159 | 0.662490 | 0.507184 | 0.042* | |
| C17 | 0.85309 (13) | 0.21469 (17) | 0.55726 (7) | 0.0313 (3) | |
| C18 | 0.75571 (18) | 0.0728 (2) | 0.52590 (12) | 0.0545 (5) | |
| H18A | 0.717684 | 0.045775 | 0.568135 | 0.082* | |
| H18B | 0.692811 | 0.114293 | 0.476635 | 0.082* | |
| H18C | 0.794385 | −0.032304 | 0.512895 | 0.082* | |
| C19 | 0.95174 (18) | 0.1387 (3) | 0.63136 (9) | 0.0546 (5) | |
| H19A | 0.915053 | 0.109330 | 0.674008 | 0.082* | |
| H19B | 0.986240 | 0.033393 | 0.614917 | 0.082* | |
| H19C | 1.017007 | 0.224808 | 0.652530 | 0.082* | |
| C20 | 0.91373 (19) | 0.2589 (3) | 0.49204 (11) | 0.0565 (5) | |
| H20A | 0.852293 | 0.307854 | 0.443928 | 0.085* | |
| H20B | 0.979226 | 0.344302 | 0.514043 | 0.085* | |
| H20C | 0.948459 | 0.152887 | 0.476430 | 0.085* | |
| C21 | 0.83767 (16) | 0.6747 (2) | 0.76656 (9) | 0.0441 (4) | |
| H21A | 0.895241 | 0.591026 | 0.801301 | 0.066* | |
| H21B | 0.771345 | 0.698204 | 0.789736 | 0.066* | |
| H21C | 0.880912 | 0.783389 | 0.763689 | 0.066* |
| N1 | 0.0282 (5) | 0.0284 (5) | 0.0214 (5) | 0.0016 (4) | 0.0039 (4) | −0.0010 (4) |
| N2 | 0.0362 (6) | 0.0291 (6) | 0.0360 (6) | 0.0066 (5) | 0.0126 (5) | 0.0002 (5) |
| C1 | 0.0423 (7) | 0.0327 (7) | 0.0270 (6) | 0.0051 (6) | 0.0141 (5) | −0.0016 (5) |
| C2 | 0.0303 (7) | 0.0566 (10) | 0.0495 (9) | 0.0131 (7) | 0.0064 (6) | −0.0033 (7) |
| C3 | 0.0268 (6) | 0.0447 (8) | 0.0407 (8) | 0.0011 (6) | 0.0006 (5) | −0.0006 (6) |
| C4 | 0.0581 (13) | 0.0249 (9) | 0.0478 (12) | 0.000 | 0.0242 (10) | 0.000 |
| C5 | 0.0356 (9) | 0.0236 (8) | 0.0228 (8) | 0.000 | 0.0055 (7) | 0.000 |
| O1 | 0.0527 (6) | 0.0388 (6) | 0.0200 (4) | 0.0145 (5) | −0.0005 (4) | −0.0011 (4) |
| C11 | 0.0373 (7) | 0.0269 (6) | 0.0199 (5) | 0.0007 (5) | 0.0072 (5) | 0.0004 (4) |
| C12 | 0.0299 (6) | 0.0228 (6) | 0.0215 (5) | −0.0008 (5) | 0.0082 (4) | −0.0006 (4) |
| C13 | 0.0303 (6) | 0.0296 (6) | 0.0223 (6) | 0.0006 (5) | 0.0058 (5) | −0.0017 (5) |
| C14 | 0.0390 (7) | 0.0282 (6) | 0.0257 (6) | −0.0038 (5) | 0.0128 (5) | −0.0048 (5) |
| C15 | 0.0496 (8) | 0.0253 (6) | 0.0321 (6) | 0.0065 (6) | 0.0189 (6) | 0.0008 (5) |
| C16 | 0.0436 (7) | 0.0323 (7) | 0.0275 (6) | 0.0111 (6) | 0.0089 (5) | 0.0055 (5) |
| C17 | 0.0414 (7) | 0.0293 (6) | 0.0218 (6) | 0.0094 (5) | 0.0077 (5) | −0.0015 (5) |
| C18 | 0.0691 (11) | 0.0254 (7) | 0.0611 (10) | 0.0007 (7) | 0.0090 (9) | −0.0098 (7) |
| C19 | 0.0657 (11) | 0.0584 (10) | 0.0316 (7) | 0.0367 (9) | 0.0033 (7) | −0.0055 (7) |
| C20 | 0.0749 (12) | 0.0587 (11) | 0.0495 (9) | 0.0235 (9) | 0.0391 (9) | 0.0062 (8) |
| C21 | 0.0546 (9) | 0.0442 (8) | 0.0326 (7) | −0.0016 (7) | 0.0122 (6) | −0.0157 (6) |
| N1—C5 | 1.4680 (13) | C13—C14 | 1.3961 (18) |
| N1—C3i | 1.4694 (17) | C13—H13 | 0.9500 |
| N1—C1 | 1.4761 (17) | C14—C15 | 1.3874 (19) |
| N2—C1 | 1.4517 (17) | C14—C21 | 1.5159 (18) |
| N2—C2 | 1.456 (2) | C15—C16 | 1.3868 (19) |
| N2—C4 | 1.4615 (16) | C15—H15 | 0.9500 |
| C1—H1A | 0.9900 | C16—H16 | 0.9500 |
| C1—H1B | 0.9900 | C17—C20 | 1.533 (2) |
| C2—C3 | 1.510 (2) | C17—C19 | 1.5328 (19) |
| C2—H2A | 0.9900 | C17—C18 | 1.533 (2) |
| C2—H2B | 0.9900 | C18—H18A | 0.9800 |
| C3—H3A | 0.9900 | C18—H18B | 0.9800 |
| C3—H3B | 0.9900 | C18—H18C | 0.9800 |
| C4—H4A | 0.9900 | C19—H19A | 0.9800 |
| C4—H4B | 0.9900 | C19—H19B | 0.9800 |
| C5—H5A | 0.9900 | C19—H19C | 0.9800 |
| C5—H5B | 0.9900 | C20—H20A | 0.9800 |
| O1—C11 | 1.3760 (15) | C20—H20B | 0.9800 |
| O1—H1 | 0.88 (2) | C20—H20C | 0.9800 |
| C11—C16 | 1.3920 (18) | C21—H21A | 0.9800 |
| C11—C12 | 1.4086 (17) | C21—H21B | 0.9800 |
| C12—C13 | 1.4016 (16) | C21—H21C | 0.9800 |
| C12—C17 | 1.5353 (17) | ||
| C5—N1—C3i | 113.69 (9) | C14—C13—C12 | 123.91 (12) |
| C5—N1—C1 | 114.72 (9) | C14—C13—H13 | 118.0 |
| C3i—N1—C1 | 114.05 (11) | C12—C13—H13 | 118.0 |
| C1—N2—C2 | 114.42 (12) | C15—C14—C13 | 117.82 (11) |
| C1—N2—C4 | 115.31 (10) | C15—C14—C21 | 121.34 (12) |
| C2—N2—C4 | 114.44 (11) | C13—C14—C21 | 120.83 (12) |
| N2—C1—N1 | 119.16 (10) | C16—C15—C14 | 120.13 (12) |
| N2—C1—H1A | 107.5 | C16—C15—H15 | 119.9 |
| N1—C1—H1A | 107.5 | C14—C15—H15 | 119.9 |
| N2—C1—H1B | 107.5 | C15—C16—C11 | 121.33 (12) |
| N1—C1—H1B | 107.5 | C15—C16—H16 | 119.3 |
| H1A—C1—H1B | 107.0 | C11—C16—H16 | 119.3 |
| N2—C2—C3 | 117.06 (12) | C20—C17—C19 | 107.96 (14) |
| N2—C2—H2A | 108.0 | C20—C17—C18 | 110.29 (14) |
| C3—C2—H2A | 108.0 | C19—C17—C18 | 106.91 (14) |
| N2—C2—H2B | 108.0 | C20—C17—C12 | 109.72 (12) |
| C3—C2—H2B | 108.0 | C19—C17—C12 | 112.10 (10) |
| H2A—C2—H2B | 107.3 | C18—C17—C12 | 109.81 (12) |
| N1i—C3—C2 | 116.84 (11) | C17—C18—H18A | 109.5 |
| N1i—C3—H3A | 108.1 | C17—C18—H18B | 109.5 |
| C2—C3—H3A | 108.1 | H18A—C18—H18B | 109.5 |
| N1i—C3—H3B | 108.1 | C17—C18—H18C | 109.5 |
| C2—C3—H3B | 108.1 | H18A—C18—H18C | 109.5 |
| H3A—C3—H3B | 107.3 | H18B—C18—H18C | 109.5 |
| N2i—C4—N2 | 118.16 (16) | C17—C19—H19A | 109.5 |
| N2i—C4—H4A | 107.8 | C17—C19—H19B | 109.5 |
| N2—C4—H4A | 107.8 | H19A—C19—H19B | 109.5 |
| N2i—C4—H4B | 107.8 | C17—C19—H19C | 109.5 |
| N2—C4—H4B | 107.8 | H19A—C19—H19C | 109.5 |
| H4A—C4—H4B | 107.1 | H19B—C19—H19C | 109.5 |
| N1—C5—N1i | 119.17 (14) | C17—C20—H20A | 109.5 |
| N1—C5—H5A | 107.5 | C17—C20—H20B | 109.5 |
| N1i—C5—H5A | 107.5 | H20A—C20—H20B | 109.5 |
| N1—C5—H5B | 107.5 | C17—C20—H20C | 109.5 |
| N1i—C5—H5B | 107.5 | H20A—C20—H20C | 109.5 |
| H5A—C5—H5B | 107.0 | H20B—C20—H20C | 109.5 |
| C11—O1—H1 | 110.4 (13) | C14—C21—H21A | 109.5 |
| O1—C11—C16 | 120.38 (11) | C14—C21—H21B | 109.5 |
| O1—C11—C12 | 119.23 (11) | H21A—C21—H21B | 109.5 |
| C16—C11—C12 | 120.39 (11) | C14—C21—H21C | 109.5 |
| C13—C12—C11 | 116.33 (11) | H21A—C21—H21C | 109.5 |
| C13—C12—C17 | 121.39 (11) | H21B—C21—H21C | 109.5 |
| C11—C12—C17 | 122.27 (10) | ||
| C2—N2—C1—N1 | 81.95 (16) | C11—C12—C13—C14 | 0.39 (19) |
| C4—N2—C1—N1 | −53.89 (17) | C17—C12—C13—C14 | −179.70 (12) |
| C5—N1—C1—N2 | −52.30 (16) | C12—C13—C14—C15 | 1.9 (2) |
| C3i—N1—C1—N2 | 81.31 (15) | C12—C13—C14—C21 | −177.37 (13) |
| C1—N2—C2—C3 | −67.63 (18) | C13—C14—C15—C16 | −1.9 (2) |
| C4—N2—C2—C3 | 68.60 (19) | C21—C14—C15—C16 | 177.41 (14) |
| N2—C2—C3—N1i | −0.8 (2) | C14—C15—C16—C11 | −0.4 (2) |
| C1—N2—C4—N2i | 53.56 (9) | O1—C11—C16—C15 | −178.23 (13) |
| C2—N2—C4—N2i | −82.27 (10) | C12—C11—C16—C15 | 2.9 (2) |
| C3i—N1—C5—N1i | −81.55 (10) | C13—C12—C17—C20 | −115.74 (15) |
| C1—N1—C5—N1i | 52.24 (8) | C11—C12—C17—C20 | 64.16 (17) |
| O1—C11—C12—C13 | 178.33 (11) | C13—C12—C17—C19 | 4.20 (19) |
| C16—C11—C12—C13 | −2.75 (19) | C11—C12—C17—C19 | −175.90 (14) |
| O1—C11—C12—C17 | −1.58 (19) | C13—C12—C17—C18 | 122.88 (14) |
| C16—C11—C12—C17 | 177.35 (12) | C11—C12—C17—C18 | −57.22 (17) |
| H··· | ||||
| O1—H1···N1 | 0.88 (2) | 2.01 (2) | 2.8534 (15) | 161.6 (17) |
| C18—H18 | 0.98 | 2.30 | 2.966 (2) | 124 |
| C20—H20 | 0.98 | 2.41 | 3.058 (3) | 124 |
| C1—H1 | 0.98 | 2.90 | 3.851 (2) | 163 |