| Literature DB >> 36072135 |
Ray J Butcher1, Puspendra Singh2, Gulam Shabbani2.
Abstract
The structure of a mono-amine PdII complex, [PdCl2(C7H9N)(C12H11NS)], which crystallizes in the triclinic space group, P , is reported. The primary geometry around the PdII atom closely resembles square planar (τ4' = 0.069). In the (E)-1-(thio-phen-2-yl)-N-(p-tol-yl)methanimine ligand, the phenyl and thio-phene rings are not coplanar, subtending a dihedral angle of 38.5 (1)° because of steric effects. The PdCl2N2 coordination plane is almost perpendicular to the planes of the coordinated o-toluidine and the NC2 fragment [dihedral angles of 84.7 (1) and 72.50 (4)°, respectively]. The Pd-NH2 length of 2.040 (2) Å is slightly shorter than the observed mean value for other complexes involving a Pd atom attached to the nitro-gen of an aniline derivative. The mol-ecules display an inter-esting supra-molecular synthon based on reciprocal inter-molecular N-H⋯Cl hydrogen-bonding inter-actions of the p-toluidine amine fragment, which results in centrosymmetric dimeric units. These units are further linked by C-H⋯Cl inter-actions, resulting in chains in the c-axis direction where the mean-planes of the repeating fragment are oriented in the (110) plane. © Butcher et al. 2022.Entities:
Keywords: crystal structure; fingerprint plots; p-toluidine; palladium mono-amine complex
Year: 2022 PMID: 36072135 PMCID: PMC9431797 DOI: 10.1107/S2056989022004960
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Molecular structure of Pd(HL 1)L 2Cl2 showing the atom-numbering scheme. Atomic displacement parameters are at the 30% probability level.
Selected geometric parameters (Å, °)
| Pd1—N1 | 2.015 (2) | Pd1—Cl2 | 2.3082 (7) |
| Pd1—N2 | 2.040 (2) | S1—C1 | 1.702 (3) |
| Pd1—Cl1 | 2.3067 (7) | S1—C4 | 1.721 (3) |
| N1—Pd1—N2 | 176.02 (9) | N2—Pd1—Cl2 | 91.00 (7) |
| N1—Pd1—Cl1 | 90.55 (6) | Cl1—Pd1—Cl2 | 174.53 (2) |
| N2—Pd1—Cl1 | 86.64 (7) | C1—S1—C4 | 91.29 (14) |
| N1—Pd1—Cl2 | 92.04 (6) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.85 (2) | 2.45 (2) | 3.273 (2) | 163 (2) |
| C2—H2 | 0.95 | 2.97 | 3.779 (3) | 144 |
| C5—H5 | 0.95 | 2.98 | 3.759 (3) | 140 |
| C7—H7 | 0.95 | 2.80 | 3.629 (3) | 147 |
| C11—H11 | 0.95 | 2.96 | 3.711 (3) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Packing diagram for Pd(HL 1)L 2Cl2 showing the intermolecular N—H⋯Cl hydrogen-bonding interactions of the p-toluidine amine fragment resulting in centrosymmetric dimeric units that are further linked by intermolecular C—H⋯Cl interactions, resulting in chains in the c-axis direction where the mean planes of the repeating fragment are oriented in the (110) plane.
Experimental details
| Crystal data | |
| Chemical formula | [PdCl2(C7H9N)(C12H11NS)] |
|
| 485.73 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 9.2135 (4), 9.4060 (4), 12.9032 (5) |
| α, β, γ (°) | 79.866 (2), 70.000 (2), 67.753 (2) |
|
| 971.17 (7) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 1.34 |
| Crystal size (mm) | 0.21 × 0.16 × 0.10 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.622, 0.747 |
| No. of measured, independent and observed [ | 22977, 7379, 5166 |
|
| 0.074 |
| (sin θ/λ)max (Å−1) | 0.771 |
| Refinement | |
|
| 0.045, 0.090, 1.04 |
| No. of reflections | 7379 |
| No. of parameters | 236 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.75, −1.05 |
Computer programs: APEX2 (Bruker, 2005 ▸), SAINT (Bruker, 2002 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸) and SHELXTL (Sheldrick, 2008 ▸).
| [PdCl2(C7H9N)(C12H11NS)] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 7754 reflections | |
| θ = 2.6–31.6° | |
| α = 79.866 (2)° | µ = 1.34 mm−1 |
| β = 70.000 (2)° | |
| γ = 67.753 (2)° | Prism, red-orange |
| 0.21 × 0.16 × 0.10 mm |
| Bruker APEXII CCD diffractometer | 5166 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Krause | θmax = 33.2°, θmin = 2.6° |
| 22977 measured reflections | |
| 7379 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 7379 reflections | (Δ/σ)max = 0.001 |
| 236 parameters | Δρmax = 0.75 e Å−3 |
| 3 restraints | Δρmin = −1.04 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Pd1 | 0.53572 (2) | 0.53405 (2) | 0.70240 (2) | 0.01680 (6) | |
| Cl1 | 0.33922 (8) | 0.70208 (8) | 0.83363 (6) | 0.02463 (14) | |
| Cl2 | 0.71210 (8) | 0.36598 (7) | 0.56567 (5) | 0.02350 (14) | |
| S1 | 0.85995 (9) | 0.55990 (9) | 0.70536 (6) | 0.02886 (16) | |
| N1 | 0.6002 (3) | 0.3778 (2) | 0.82190 (18) | 0.0176 (4) | |
| N2 | 0.4704 (3) | 0.7036 (3) | 0.5873 (2) | 0.0220 (5) | |
| H2N1 | 0.377 (3) | 0.770 (3) | 0.622 (2) | 0.032 (9)* | |
| H2N2 | 0.444 (3) | 0.674 (3) | 0.5400 (19) | 0.028 (9)* | |
| C1 | 1.0173 (4) | 0.5879 (3) | 0.7297 (3) | 0.0305 (7) | |
| H1A | 1.076419 | 0.650381 | 0.682505 | 0.037* | |
| C2 | 1.0496 (3) | 0.5118 (3) | 0.8234 (3) | 0.0298 (7) | |
| H2A | 1.133321 | 0.516183 | 0.848589 | 0.036* | |
| C3 | 0.9467 (3) | 0.4256 (3) | 0.8798 (2) | 0.0198 (5) | |
| H3A | 0.952608 | 0.364962 | 0.946424 | 0.024* | |
| C4 | 0.8334 (3) | 0.4419 (3) | 0.8232 (2) | 0.0197 (5) | |
| C5 | 0.7160 (3) | 0.3650 (3) | 0.8615 (2) | 0.0198 (5) | |
| H5A | 0.724011 | 0.295542 | 0.924122 | 0.024* | |
| C6 | 0.4938 (3) | 0.2900 (3) | 0.8769 (2) | 0.0192 (5) | |
| C7 | 0.4335 (3) | 0.2799 (3) | 0.9911 (2) | 0.0227 (6) | |
| H7A | 0.463677 | 0.329462 | 1.034377 | 0.027* | |
| C8 | 0.3296 (3) | 0.1977 (3) | 1.0415 (2) | 0.0238 (6) | |
| H8A | 0.288941 | 0.191174 | 1.119823 | 0.029* | |
| C9 | 0.2829 (3) | 0.1243 (3) | 0.9811 (2) | 0.0225 (6) | |
| C10 | 0.3476 (3) | 0.1323 (3) | 0.8664 (2) | 0.0258 (6) | |
| H10A | 0.320210 | 0.079781 | 0.823403 | 0.031* | |
| C11 | 0.4510 (3) | 0.2156 (3) | 0.8141 (2) | 0.0240 (6) | |
| H11A | 0.492453 | 0.221808 | 0.735826 | 0.029* | |
| C12 | 0.1631 (3) | 0.0410 (3) | 1.0382 (3) | 0.0301 (7) | |
| H12A | 0.190105 | −0.017694 | 1.103815 | 0.045* | |
| H12B | 0.169958 | −0.029332 | 0.987540 | 0.045* | |
| H12C | 0.051154 | 0.115955 | 1.060209 | 0.045* | |
| C13 | 0.5932 (3) | 0.7750 (3) | 0.5331 (2) | 0.0198 (5) | |
| C14 | 0.6077 (3) | 0.8804 (3) | 0.5877 (2) | 0.0223 (6) | |
| H14A | 0.539342 | 0.903607 | 0.661152 | 0.027* | |
| C15 | 0.7222 (3) | 0.9519 (3) | 0.5351 (2) | 0.0240 (6) | |
| H15A | 0.731007 | 1.025059 | 0.572709 | 0.029* | |
| C16 | 0.8240 (3) | 0.9187 (3) | 0.4286 (2) | 0.0257 (6) | |
| C17 | 0.8092 (4) | 0.8100 (3) | 0.3760 (2) | 0.0287 (6) | |
| H17A | 0.878381 | 0.785164 | 0.303024 | 0.034* | |
| C18 | 0.6952 (3) | 0.7373 (3) | 0.4283 (2) | 0.0253 (6) | |
| H18A | 0.687823 | 0.661983 | 0.391948 | 0.030* | |
| C19 | 0.9476 (4) | 0.9977 (4) | 0.3690 (3) | 0.0348 (7) | |
| H19A | 0.938923 | 1.073179 | 0.416289 | 0.052* | |
| H19B | 0.925215 | 1.050022 | 0.300474 | 0.052* | |
| H19C | 1.058806 | 0.921028 | 0.351413 | 0.052* |
| Pd1 | 0.01898 (10) | 0.01641 (10) | 0.01739 (10) | −0.00721 (7) | −0.00816 (8) | 0.00119 (7) |
| Cl1 | 0.0253 (3) | 0.0249 (3) | 0.0226 (3) | −0.0071 (3) | −0.0069 (3) | −0.0032 (3) |
| Cl2 | 0.0275 (3) | 0.0217 (3) | 0.0215 (3) | −0.0066 (3) | −0.0086 (3) | −0.0033 (2) |
| S1 | 0.0309 (4) | 0.0297 (4) | 0.0300 (4) | −0.0159 (3) | −0.0113 (3) | 0.0054 (3) |
| N1 | 0.0217 (11) | 0.0162 (10) | 0.0173 (11) | −0.0082 (9) | −0.0082 (9) | 0.0017 (8) |
| N2 | 0.0245 (12) | 0.0213 (12) | 0.0232 (13) | −0.0078 (10) | −0.0127 (11) | 0.0022 (9) |
| C1 | 0.0253 (15) | 0.0279 (15) | 0.0389 (18) | −0.0150 (12) | −0.0021 (14) | −0.0050 (13) |
| C2 | 0.0245 (15) | 0.0322 (16) | 0.0368 (18) | −0.0118 (12) | −0.0078 (14) | −0.0103 (13) |
| C3 | 0.0145 (12) | 0.0182 (12) | 0.0269 (14) | −0.0071 (10) | −0.0031 (11) | −0.0047 (10) |
| C4 | 0.0219 (13) | 0.0195 (12) | 0.0178 (13) | −0.0081 (10) | −0.0056 (11) | 0.0005 (10) |
| C5 | 0.0224 (13) | 0.0167 (12) | 0.0198 (13) | −0.0055 (10) | −0.0075 (11) | −0.0003 (10) |
| C6 | 0.0196 (13) | 0.0165 (12) | 0.0222 (14) | −0.0061 (10) | −0.0089 (11) | 0.0022 (10) |
| C7 | 0.0232 (14) | 0.0246 (14) | 0.0227 (14) | −0.0104 (11) | −0.0066 (12) | −0.0026 (11) |
| C8 | 0.0229 (14) | 0.0250 (14) | 0.0215 (14) | −0.0082 (11) | −0.0035 (12) | −0.0024 (11) |
| C9 | 0.0189 (13) | 0.0171 (12) | 0.0296 (15) | −0.0052 (10) | −0.0069 (12) | 0.0002 (11) |
| C10 | 0.0300 (15) | 0.0237 (14) | 0.0287 (16) | −0.0128 (12) | −0.0105 (13) | −0.0021 (11) |
| C11 | 0.0280 (15) | 0.0282 (14) | 0.0194 (14) | −0.0127 (12) | −0.0092 (12) | 0.0007 (11) |
| C12 | 0.0258 (15) | 0.0242 (14) | 0.0398 (18) | −0.0128 (12) | −0.0059 (14) | 0.0010 (13) |
| C13 | 0.0224 (13) | 0.0169 (12) | 0.0200 (13) | −0.0059 (10) | −0.0096 (11) | 0.0034 (10) |
| C14 | 0.0253 (14) | 0.0191 (13) | 0.0202 (14) | −0.0061 (11) | −0.0068 (12) | 0.0013 (10) |
| C15 | 0.0293 (15) | 0.0194 (13) | 0.0265 (15) | −0.0089 (11) | −0.0127 (13) | 0.0011 (11) |
| C16 | 0.0211 (13) | 0.0239 (14) | 0.0301 (16) | −0.0059 (11) | −0.0118 (13) | 0.0075 (11) |
| C17 | 0.0262 (15) | 0.0281 (15) | 0.0234 (15) | −0.0030 (12) | −0.0036 (13) | −0.0030 (12) |
| C18 | 0.0314 (15) | 0.0232 (14) | 0.0210 (14) | −0.0081 (12) | −0.0080 (13) | −0.0029 (11) |
| C19 | 0.0290 (16) | 0.0328 (17) | 0.0409 (19) | −0.0140 (13) | −0.0093 (15) | 0.0073 (14) |
| Pd1—N1 | 2.015 (2) | C8—H8A | 0.9500 |
| Pd1—N2 | 2.040 (2) | C9—C10 | 1.394 (4) |
| Pd1—Cl1 | 2.3067 (7) | C9—C12 | 1.507 (4) |
| Pd1—Cl2 | 2.3082 (7) | C10—C11 | 1.384 (4) |
| S1—C1 | 1.702 (3) | C10—H10A | 0.9500 |
| S1—C4 | 1.721 (3) | C11—H11A | 0.9500 |
| N1—C5 | 1.291 (3) | C12—H12A | 0.9800 |
| N1—C6 | 1.442 (3) | C12—H12B | 0.9800 |
| N2—C13 | 1.446 (3) | C12—H12C | 0.9800 |
| N2—H2N1 | 0.868 (16) | C13—C18 | 1.372 (4) |
| N2—H2N2 | 0.848 (16) | C13—C14 | 1.382 (4) |
| C1—C2 | 1.358 (4) | C14—C15 | 1.383 (4) |
| C1—H1A | 0.9500 | C14—H14A | 0.9500 |
| C2—C3 | 1.410 (4) | C15—C16 | 1.384 (4) |
| C2—H2A | 0.9500 | C15—H15A | 0.9500 |
| C3—C4 | 1.417 (4) | C16—C17 | 1.392 (4) |
| C3—H3A | 0.9500 | C16—C19 | 1.509 (4) |
| C4—C5 | 1.429 (3) | C17—C18 | 1.386 (4) |
| C5—H5A | 0.9500 | C17—H17A | 0.9500 |
| C6—C7 | 1.386 (4) | C18—H18A | 0.9500 |
| C6—C11 | 1.388 (4) | C19—H19A | 0.9800 |
| C7—C8 | 1.376 (4) | C19—H19B | 0.9800 |
| C7—H7A | 0.9500 | C19—H19C | 0.9800 |
| C8—C9 | 1.383 (4) | ||
| N1—Pd1—N2 | 176.02 (9) | C8—C9—C10 | 118.0 (2) |
| N1—Pd1—Cl1 | 90.55 (6) | C8—C9—C12 | 120.7 (3) |
| N2—Pd1—Cl1 | 86.64 (7) | C10—C9—C12 | 121.3 (3) |
| N1—Pd1—Cl2 | 92.04 (6) | C11—C10—C9 | 121.1 (3) |
| N2—Pd1—Cl2 | 91.00 (7) | C11—C10—H10A | 119.5 |
| Cl1—Pd1—Cl2 | 174.53 (2) | C9—C10—H10A | 119.5 |
| C1—S1—C4 | 91.29 (14) | C10—C11—C6 | 119.6 (3) |
| C5—N1—C6 | 118.0 (2) | C10—C11—H11A | 120.2 |
| C5—N1—Pd1 | 124.71 (18) | C6—C11—H11A | 120.2 |
| C6—N1—Pd1 | 116.66 (15) | C9—C12—H12A | 109.5 |
| C13—N2—Pd1 | 113.09 (16) | C9—C12—H12B | 109.5 |
| C13—N2—H2N1 | 112 (2) | H12A—C12—H12B | 109.5 |
| Pd1—N2—H2N1 | 106 (2) | C9—C12—H12C | 109.5 |
| C13—N2—H2N2 | 110 (2) | H12A—C12—H12C | 109.5 |
| Pd1—N2—H2N2 | 113 (2) | H12B—C12—H12C | 109.5 |
| H2N1—N2—H2N2 | 102 (2) | C18—C13—C14 | 120.4 (3) |
| C2—C1—S1 | 113.1 (2) | C18—C13—N2 | 120.1 (2) |
| C2—C1—H1A | 123.4 | C14—C13—N2 | 119.5 (2) |
| S1—C1—H1A | 123.4 | C13—C14—C15 | 119.7 (3) |
| C1—C2—C3 | 113.4 (3) | C13—C14—H14A | 120.1 |
| C1—C2—H2A | 123.3 | C15—C14—H14A | 120.1 |
| C3—C2—H2A | 123.3 | C14—C15—C16 | 121.1 (3) |
| C2—C3—C4 | 110.5 (2) | C14—C15—H15A | 119.4 |
| C2—C3—H3A | 124.7 | C16—C15—H15A | 119.4 |
| C4—C3—H3A | 124.7 | C15—C16—C17 | 118.1 (3) |
| C3—C4—C5 | 122.3 (2) | C15—C16—C19 | 121.9 (3) |
| C3—C4—S1 | 111.66 (19) | C17—C16—C19 | 120.0 (3) |
| C5—C4—S1 | 126.0 (2) | C18—C17—C16 | 121.2 (3) |
| N1—C5—C4 | 128.2 (2) | C18—C17—H17A | 119.4 |
| N1—C5—H5A | 115.9 | C16—C17—H17A | 119.4 |
| C4—C5—H5A | 115.9 | C13—C18—C17 | 119.5 (3) |
| C7—C6—C11 | 119.9 (2) | C13—C18—H18A | 120.3 |
| C7—C6—N1 | 120.8 (2) | C17—C18—H18A | 120.3 |
| C11—C6—N1 | 119.3 (2) | C16—C19—H19A | 109.5 |
| C8—C7—C6 | 119.6 (3) | C16—C19—H19B | 109.5 |
| C8—C7—H7A | 120.2 | H19A—C19—H19B | 109.5 |
| C6—C7—H7A | 120.2 | C16—C19—H19C | 109.5 |
| C7—C8—C9 | 121.8 (3) | H19A—C19—H19C | 109.5 |
| C7—C8—H8A | 119.1 | H19B—C19—H19C | 109.5 |
| C9—C8—H8A | 119.1 | ||
| C4—S1—C1—C2 | −0.2 (3) | C7—C8—C9—C12 | −177.2 (2) |
| S1—C1—C2—C3 | 0.4 (3) | C8—C9—C10—C11 | −2.2 (4) |
| C1—C2—C3—C4 | −0.4 (3) | C12—C9—C10—C11 | 176.6 (3) |
| C2—C3—C4—C5 | 179.1 (2) | C9—C10—C11—C6 | 1.2 (4) |
| C2—C3—C4—S1 | 0.3 (3) | C7—C6—C11—C10 | 0.3 (4) |
| C1—S1—C4—C3 | −0.1 (2) | N1—C6—C11—C10 | −179.4 (2) |
| C1—S1—C4—C5 | −178.9 (3) | Pd1—N2—C13—C18 | 102.6 (2) |
| C6—N1—C5—C4 | −178.6 (2) | Pd1—N2—C13—C14 | −76.9 (3) |
| Pd1—N1—C5—C4 | −7.9 (4) | C18—C13—C14—C15 | 2.1 (4) |
| C3—C4—C5—N1 | 175.2 (3) | N2—C13—C14—C15 | −178.3 (2) |
| S1—C4—C5—N1 | −6.2 (4) | C13—C14—C15—C16 | −0.6 (4) |
| C5—N1—C6—C7 | 43.1 (3) | C14—C15—C16—C17 | −0.6 (4) |
| Pd1—N1—C6—C7 | −128.3 (2) | C14—C15—C16—C19 | 178.9 (2) |
| C5—N1—C6—C11 | −137.2 (3) | C15—C16—C17—C18 | 0.3 (4) |
| Pd1—N1—C6—C11 | 51.4 (3) | C19—C16—C17—C18 | −179.1 (3) |
| C11—C6—C7—C8 | −0.9 (4) | C14—C13—C18—C17 | −2.4 (4) |
| N1—C6—C7—C8 | 178.8 (2) | N2—C13—C18—C17 | 178.1 (2) |
| C6—C7—C8—C9 | −0.1 (4) | C16—C17—C18—C13 | 1.1 (4) |
| C7—C8—C9—C10 | 1.6 (4) |
| H··· | ||||
| N2—H2 | 0.85 (2) | 2.45 (2) | 3.273 (2) | 163 (2) |
| C2—H2 | 0.95 | 2.97 | 3.779 (3) | 144 |
| C5—H5 | 0.95 | 2.98 | 3.759 (3) | 140 |
| C7—H7 | 0.95 | 2.80 | 3.629 (3) | 147 |
| C11—H11 | 0.95 | 2.96 | 3.711 (3) | 137 |