Literature DB >> 36071879

Biophysical elucidation of neural network and chemical regeneration of neural tissue.

Takahiro Muraoka1,2, Tomohide Saio3, Masaki Okumura4.   

Abstract

Entities:  

Year:  2022        PMID: 36071879      PMCID: PMC9402262          DOI: 10.2142/biophysico.bppb-v19.0024

Source DB:  PubMed          Journal:  Biophys Physicobiol        ISSN: 2189-4779


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Brain science has made remarkable progress over the past decade. Unveiling the development of neural tissue, understanding neural circuits, and elucidation of signal transduction processes at the molecular level have been carried out. Not only neuroscience but also mechanistic biochemical and biophysical studies on neural diseases are progressing. Neurodegenerative diseases are one representative example, and the structure and dynamics of the causative proteins are being investigated at the molecular level. Integrating discussions between biophysical neuroscience and biochemical research of the brain should address important unexplored issues such as the molecular- and cellular-scale elucidation of brain functions and the development of functional molecules and biomaterials for neuronal tissue regeneration. To highlight recent progress in this research field, we organize a symposium during the 60th Annual Meeting of the Biophysical Society of Japan held in September 2022. Five researchers including biophysicists, neurobiologists and biochemists in Japan and Korea are invited to talk about their recent achievements in the fields of brain science. The topics of the talks are highlighted as below. Autophagy is an intracellular degradation system delivering cytoplasmic constituents to the lysosome. Recent studies report its wide variety of physiological roles including intracellular clearance in the brain and pathological consequences such as neurodegeneration caused by its dysfunction [1]. Dr. Yuko Fujioka (Hokkaido University) has investigated the structural and biochemical analyses of autophagy-related proteins for elucidation of the autophagy mechanisms [2,3]. Based on her studies on the Atg1 complex, a scaffold protein complex responsible for autophagy initiation, she discovered phase separation and liquid-like droplet formation of Atg1 complex as a reaction chamber for enzymatic reaction relating to autophagy progression. In the symposium, she will talk about her recent achievement in phase separation providing a reaction chamber for autophagy progression. Accumulation of protein misfolding, aggregation and fibrillation leads the cause of several protein misfolding diseases, namely amyloidogenesis, such as Alzheimer’s disease and Parkinson’s disease [4]. Dr. Young-Ho Lee (Korea Basic Science Institute, University of Science and Technology, Chungnam National University) will talk about the molecular mechanism of protein aggregation, particularly amyloid fibrillation, in neurodegenerative disease. His talk will cover important properties of amyloid fibrillation such as polymorphic amyloidogenesis and physicochemical mechanisms of amyloid formation based on molecular-level structures and solubility/supersaturation phase diagrams of the misfolded proteins [5-7]. Single-molecule imaging is a powerful technique to visualize the actions of neurons at the molecular level. In recent years, single-molecule imaging plays an important role that contributes to the detection of abnormalities in disease model cells with high sensitivity, leading to an understanding of the mechanisms of pathology. Dr. Hiroko Bannai (Waseda University) will talk about the current status, problems, and potential of single-molecule imaging studies in neurological disease research [8,9]. It has been believed that the brain is a non-regenerative tissue. However, it is being elucidated that the injured brain has regenerative potential. Dr. Itsuki Ajioka (Tokyo Medical Dental University, KISTEC) will present injured brain regeneration using supramolecular peptide hydrogels [10-12]. Self-assembling peptides form a hydrogel by supramolecular interactions. Because of the potential biocompatibility and chemical customizability, the self-assembling peptides fit for medical applications. He will show applications of the peptidic materials with self-assembling properties to injured brain regeneration. As odors induce innate behaviors such as attraction and aversion, they are associated with values ranging from positive to negative. However, how the opposing and innate values of odors are represented and computed in the brain remain unclear. Dr. Hokto Kazama (RIKEN) is addressing this issue in fruit fly Drosophila by combining behavioral analysis in virtual reality and physiological analysis using calcium imaging [13,14]. He will talk about representations and circuits for opposing odor values in the higher-order brain regions. Collectively, we will share the recent findings and progresses regarding neural network and regeneration of neural tissue in this symposium. Not only neuroscientists but also scientists in structural biology, biochemistry, and biophysics can discuss the current topics and future perspectives of this research field. This symposium provides a chance for interdisciplinary discussion that cultivates and evolves future collaborations and transformative research. We thank all the speakers in this symposium. We acknowledge the Ministry of Education, Culture, Sports, Science and Technology (MEXT) “Grant-in-Aid for Transformative Research Areas (B),” “Kinetics-Driven Supramolecular Chemistry” (No. 21B205, JP21H05093 to T.M.).
  13 in total

Review 1.  Autophagy: renovation of cells and tissues.

Authors:  Noboru Mizushima; Masaaki Komatsu
Journal:  Cell       Date:  2011-11-11       Impact factor: 41.582

Review 2.  Self-propagation of pathogenic protein aggregates in neurodegenerative diseases.

Authors:  Mathias Jucker; Lary C Walker
Journal:  Nature       Date:  2013-09-05       Impact factor: 49.962

Review 3.  Biomolecular condensates in autophagy regulation.

Authors:  Yuko Fujioka; Nobuo N Noda
Journal:  Curr Opin Cell Biol       Date:  2021-01-11       Impact factor: 8.382

4.  Energy landscape of polymorphic amyloid generation of β2-microglobulin revealed by calorimetry.

Authors:  Misaki Kinoshita; Yuxi Lin; Itoh Dai; Masaki Okumura; Natalia Markova; John E Ladbury; Fabio Sterpone; Young-Ho Lee
Journal:  Chem Commun (Camb)       Date:  2018-07-12       Impact factor: 6.222

5.  Decoding of Context-Dependent Olfactory Behavior in Drosophila.

Authors:  Laurent Badel; Kazumi Ohta; Yoshiko Tsuchimoto; Hokto Kazama
Journal:  Neuron       Date:  2016-06-16       Impact factor: 17.173

6.  Synthesis of Conserved Odor Object Representations in a Random, Divergent-Convergent Network.

Authors:  Keita Endo; Yoshiko Tsuchimoto; Hokto Kazama
Journal:  Neuron       Date:  2020-08-18       Impact factor: 17.173

Review 7.  Molecular membrane dynamics: Insights into synaptic function and neuropathological disease.

Authors:  Hiroko Bannai
Journal:  Neurosci Res       Date:  2017-08-05       Impact factor: 3.304

8.  Phase separation organizes the site of autophagosome formation.

Authors:  Yuko Fujioka; Jahangir Md Alam; Daisuke Noshiro; Kazunari Mouri; Toshio Ando; Yasushi Okada; Alexander I May; Roland L Knorr; Kuninori Suzuki; Yoshinori Ohsumi; Nobuo N Noda
Journal:  Nature       Date:  2020-02-05       Impact factor: 49.962

9.  Diverse Structural Conversion and Aggregation Pathways of Alzheimer's Amyloid-β (1-40).

Authors:  Yuxi Lin; Bikash R Sahoo; Daisaku Ozawa; Misaki Kinoshita; Juhye Kang; Mi Hee Lim; Masaki Okumura; Yang Hoon Huh; Eunyoung Moon; Jae Hyuck Jang; Hyun-Ju Lee; Ka-Young Ryu; Sihyun Ham; Hyung-Sik Won; Kyoung-Seok Ryu; Toshihiko Sugiki; Jeong Kyu Bang; Hyang-Sook Hoe; Toshimichi Fujiwara; Ayyalusamy Ramamoorthy; Young-Ho Lee
Journal:  ACS Nano       Date:  2019-07-24       Impact factor: 15.881

Review 10.  Inhibitory synaptic transmission tuned by Ca2+ and glutamate through the control of GABAA R lateral diffusion dynamics.

Authors:  Hiroko Bannai; Fumihiro Niwa; Shigeo Sakuragi; Katsuhiko Mikoshiba
Journal:  Dev Growth Differ       Date:  2020-05-20       Impact factor: 2.053

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