Literature DB >> 3607038

Evidence from Fourier transform infrared spectroscopy for polarization of the carbonyl of oxaloacetate in the active site of citrate synthase.

L C Kurz, G R Drysdale.   

Abstract

The infrared spectrum of oxaloacetate bound in the active site of citrate synthase has been measured in the binary complex and in the ternary complex with the acetyl coenzyme A (CoA) enolate analogue carboxymethyl-CoA. The carbonyl stretching frequency of oxaloacetate in binary and ternary complexes is found at 1697 cm-1, a shift of 21 cm-1 to lower frequency relative to that of the free ligand. The line widths of the carbonyl absorption in enzyme complexes differ from that of the free ligand, decreasing from a value of 20 cm-1 for the free ligand to 10 cm-1 in the binary complex and 7 cm-1 in the ternary complex with carboxymethyl-CoA. The integrated absorbance of the carbonyl absorption in these enzyme complexes is significantly increased over that of the free ligand at the same concentration, increasing approximately 2-fold in the binary complex and approximately 3-fold in the ternary complex. These results indicate strong polarization of the carbonyl bond in the enzyme-substrate complexes and suggest that ground-state destabilization is a major catalytic strategy of citrate synthase.

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Year:  1987        PMID: 3607038     DOI: 10.1021/bi00383a032

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Conversion of citrate synthase into citryl-CoA lyase as a result of mutation of the active-site aspartic acid residue to glutamic acid.

Authors:  W J Man; Y Li; C D O'Connor; D C Wilton
Journal:  Biochem J       Date:  1991-12-01       Impact factor: 3.857

2.  Hydrogen-bonding in enzyme catalysis. Fourier-transform infrared detection of ground-state electronic strain in acyl-chymotrypsins and analysis of the kinetic consequences.

Authors:  A J White; C W Wharton
Journal:  Biochem J       Date:  1990-09-15       Impact factor: 3.857

3.  Solvent-Independent Anharmonicity for Carbonyl Oscillators.

Authors:  Samuel H Schneider; Huong T Kratochvil; Martin T Zanni; Steven G Boxer
Journal:  J Phys Chem B       Date:  2017-03-08       Impact factor: 2.991

4.  Ground state destabilization from a positioned general base in the ketosteroid isomerase active site.

Authors:  Eliza A Ruben; Jason P Schwans; Matthew Sonnett; Aditya Natarajan; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-01-30       Impact factor: 3.162

5.  The partial substrate dethiaacetyl-coenzyme A mimics all critical carbon acid reactions in the condensation half-reaction catalyzed by Thermoplasma acidophilum citrate synthase.

Authors:  Linda C Kurz; Charles Z Constantine; Hong Jiang; T Joseph Kappock
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

6.  Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.

Authors:  Samuel H Schneider; Steven G Boxer
Journal:  J Phys Chem B       Date:  2016-08-31       Impact factor: 2.991

7.  The effect of replacing the conserved active-site residues His-264, Asp-312 and Arg-314 on the binding and catalytic properties of Escherichia coli citrate synthase.

Authors:  W J Man; Y Li; C D O'Connor; D C Wilton
Journal:  Biochem J       Date:  1994-06-15       Impact factor: 3.857

8.  Cyclic Changes in Active Site Polarization and Dynamics Drive the 'Ping-pong' Kinetics in NRH:Quinone Oxidoreductase 2: An Insight from QM/MM Simulations.

Authors:  Clorice R Reinhardt; Quin H Hu; Caitlin G Bresnahan; Sanchita Hati; Sudeep Bhattacharyya
Journal:  ACS Catal       Date:  2018-11-14       Impact factor: 13.084

9.  The binding of amide substrate analogues to phospholipase A2. Studies by 13C-nuclear-magnetic-resonance and infrared spectroscopy.

Authors:  P K Slaich; W U Primrose; D H Robinson; C W Wharton; A J White; K Drabble; G C Roberts
Journal:  Biochem J       Date:  1992-11-15       Impact factor: 3.857

10.  Analysis and elimination of protein perturbation in infrared difference spectra of acyl-chymotrypsin ester carbonyl groups by using 13C isotopic substitution.

Authors:  A J White; K Drabble; S Ward; C W Wharton
Journal:  Biochem J       Date:  1992-10-01       Impact factor: 3.857

  10 in total

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